Wall clock time and date at job start Mon Mar 30 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39546 * 120.14701 * 196.09805 * 3 2 1 5 5 C 1.37809 * 120.07203 * 179.74502 * 4 3 2 6 6 C 1.39182 * 120.38053 * 0.55785 * 5 4 3 7 7 N 1.39600 * 119.85244 * 179.71933 * 6 5 4 8 8 C 1.34775 * 120.00206 * 213.55943 * 7 6 5 9 9 O 1.21277 * 120.00055 * 5.27356 * 8 7 6 10 10 C 1.50694 * 119.99940 * 185.27899 * 8 7 6 11 11 C 1.52996 * 109.47409 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47388 * 179.97438 * 11 10 8 13 13 H 1.08003 * 119.99798 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99812 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99868 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00372 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.46798 * 89.99601 * 16 14 12 18 18 H 1.48494 * 109.47214 * 209.99886 * 16 14 12 19 19 H 1.48496 * 109.47076 * 330.00094 * 16 14 12 20 20 C 1.38827 * 120.30006 * 359.69630 * 6 5 4 21 21 C 1.39188 * 119.91954 * 0.02565 * 20 6 5 22 22 C 1.43194 * 120.19071 * 179.97438 * 21 20 6 23 23 N 3.55837 * 104.13751 * 16.37497 * 2 1 3 24 24 H 1.08001 * 119.96560 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.80848 * 180.25270 * 5 4 3 26 26 H 0.97004 * 119.99292 * 33.55356 * 7 6 5 27 27 H 1.09006 * 109.46897 * 299.99539 * 10 8 7 28 28 H 1.08999 * 109.47643 * 59.99045 * 10 8 7 29 29 H 1.09006 * 109.46866 * 299.99743 * 11 10 8 30 30 H 1.09004 * 109.47391 * 59.99777 * 11 10 8 31 31 H 0.96997 * 120.00320 * 179.97438 * 15 14 12 32 32 H 1.08001 * 120.03480 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 1.1603 0.3346 5 6 4.6464 1.1578 0.3392 6 6 5.3493 0.0054 0.0000 7 7 6.7452 0.0168 0.0026 8 6 7.4269 -0.7288 -0.8895 9 8 6.8310 -1.3343 -1.7550 10 6 8.9297 -0.8102 -0.8115 11 6 9.4503 -1.7146 -1.9303 12 6 10.9531 -1.7955 -1.8526 13 1 11.4838 -1.2561 -1.0820 14 6 11.6504 -2.5589 -2.7647 15 7 12.9619 -2.6299 -2.6966 16 14 10.7325 -3.4925 -4.0971 17 1 10.5933 -2.6311 -5.2986 18 1 11.4893 -4.7196 -4.4527 19 1 9.3851 -3.8688 -3.5991 20 6 4.6685 -1.1556 -0.3406 21 6 3.2766 -1.1686 -0.3437 22 6 2.5685 -2.3627 -0.6946 23 7 2.0051 -3.3106 -0.9728 24 1 2.7298 2.0596 0.5946 25 1 5.1841 2.0566 0.6028 26 1 7.2245 0.5614 0.6465 27 1 9.3539 0.1877 -0.9235 28 1 9.2216 -1.2227 0.1543 29 1 9.0261 -2.7124 -1.8178 30 1 9.1584 -1.3024 -2.8962 31 1 13.4525 -3.1673 -3.3380 32 1 5.2182 -2.0475 -0.6027 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361890853.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:33 Heat of formation + Delta-G solvation = 45.065175 kcal Electronic energy + Delta-G solvation = -18256.313249 eV Core-core repulsion = 15182.187745 eV Total energy + Delta-G solvation = -3074.125504 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93214 -39.24441 -36.91170 -36.70450 -34.91193 -33.69098 -31.94289 -31.65569 -30.41006 -26.55060 -24.75146 -24.08627 -21.54307 -20.14746 -19.97527 -18.92129 -17.55323 -16.58758 -16.49602 -15.95618 -15.32785 -14.80842 -14.69618 -14.29549 -14.19874 -13.67606 -13.63072 -13.53279 -13.31396 -13.24586 -13.01337 -12.67123 -12.52360 -12.47929 -11.92024 -11.56609 -11.08988 -10.65747 -10.35637 -10.21526 -9.92485 -9.67273 -9.46133 -9.31146 -8.61066 -8.56124 -6.12210 -4.12379 -0.02383 0.58573 2.22547 2.26121 2.30719 2.72757 2.78970 2.85645 3.31228 3.31707 3.39050 3.47261 3.51147 3.54562 4.32917 4.42095 4.56404 4.72800 4.83293 4.99899 5.23093 5.32405 5.41845 5.66161 5.70342 5.82080 5.85742 5.90261 6.41450 6.46202 7.07717 7.11690 7.18429 7.20738 7.26235 7.66100 8.10339 8.40678 8.89654 9.50103 11.00365 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029947 B = 0.003714 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.752196 B = 7537.263133 C = 8292.349375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.249 3.751 3 C -0.014 4.014 4 C -0.043 4.043 5 C -0.127 4.127 6 C 0.194 3.806 7 N -0.682 5.682 8 C 0.510 3.490 9 O -0.511 6.511 10 C -0.121 4.121 11 C 0.000 4.000 12 C -0.529 4.529 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.901 5.901 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.080 4.080 21 C 0.045 3.955 22 C 0.244 3.756 23 N -0.392 5.392 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.418 0.582 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.025 0.975 30 H 0.021 0.979 31 H 0.264 0.736 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 10.887 9.709 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.066 4.066 3 C -0.021 4.021 4 C -0.064 4.064 5 C -0.149 4.149 6 C 0.096 3.904 7 N -0.328 5.328 8 C 0.301 3.699 9 O -0.384 6.384 10 C -0.161 4.161 11 C -0.038 4.038 12 C -0.567 4.567 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.539 5.539 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.186 1.186 20 C -0.104 4.104 21 C 0.039 3.961 22 C -0.072 4.072 23 N -0.067 5.067 24 H 0.165 0.835 25 H 0.165 0.835 26 H 0.255 0.745 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.724 8.839 8.534 21.566 hybrid contribution 0.622 0.136 -0.360 0.731 sum -17.102 8.975 8.174 20.973 Atomic orbital electron populations 1.81271 1.11890 1.06679 1.08217 1.25533 0.92538 0.94372 0.94185 1.15781 0.84278 0.94545 1.07511 1.20880 0.93394 0.96266 0.95860 1.21073 0.93719 0.97076 1.03008 1.17831 0.84287 0.92619 0.95637 1.44012 1.03507 1.48560 1.36753 1.21995 0.92034 0.76689 0.79203 1.90710 1.70886 1.42833 1.33935 1.21748 0.86374 1.03891 1.04053 1.19410 0.96709 0.94766 0.92921 1.21050 0.89359 1.30418 1.15834 0.90819 1.24966 0.94693 0.96022 0.97436 1.69898 1.06292 1.40713 1.37015 0.86814 0.80655 0.79728 0.82449 1.20180 1.21378 1.18558 1.21224 0.91197 0.99124 0.98808 1.15597 0.91576 0.87006 1.01957 1.25524 0.93926 0.93217 0.94524 1.81318 1.07895 1.10078 1.07389 0.83465 0.83513 0.74475 0.88882 0.88738 0.95675 0.96080 0.92586 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.08 18.54 41.84 0.78 -4.30 16 2 C 0.25 2.51 14.40 -22.47 -0.32 2.19 16 3 C -0.01 -0.11 5.77 -106.44 -0.61 -0.73 16 4 C -0.04 -0.21 9.73 -39.25 -0.38 -0.59 16 5 C -0.13 -0.61 9.93 -39.39 -0.39 -1.01 16 6 C 0.19 1.57 6.27 -83.75 -0.53 1.04 16 7 N -0.68 -5.82 5.32 -9.88 -0.05 -5.87 16 8 C 0.51 6.99 7.55 -10.99 -0.08 6.90 16 9 O -0.51 -8.99 13.66 5.56 0.08 -8.91 16 10 C -0.12 -1.87 5.64 -27.89 -0.16 -2.03 16 11 C 0.00 0.00 3.33 -27.88 -0.09 -0.10 16 12 C -0.53 -14.00 9.66 -34.44 -0.33 -14.34 16 13 H 0.07 2.04 7.99 -52.48 -0.42 1.62 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -26.77 13.96 55.43 0.77 -25.99 16 16 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 20 C -0.08 -0.81 8.34 -39.01 -0.33 -1.13 16 21 C 0.05 0.44 5.76 -106.58 -0.61 -0.18 16 22 C 0.24 3.03 14.40 -22.43 -0.32 2.71 16 23 N -0.39 -5.81 18.55 41.89 0.78 -5.04 16 24 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 25 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 26 H 0.42 2.01 8.82 -40.82 -0.36 1.65 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.02 0.58 7.16 -51.93 -0.37 0.21 16 30 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.16 1.91 6.41 -52.49 -0.34 1.58 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -34.46 303.11 -4.75 -39.21 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: -2.74 Total: -5.11 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.26 Total: -5.36 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 2.27 Total: -41.20 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.46 -4.75 -39.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361890853.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.279 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds