Wall clock time and date at job start Mon Mar 30 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 119.99997 * 2 1 4 4 H 1.48500 * 109.47043 * 269.99393 * 3 2 1 5 5 H 1.48492 * 109.47355 * 29.99937 * 3 2 1 6 6 H 1.48507 * 109.47191 * 149.99816 * 3 2 1 7 7 C 1.38951 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99767 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.34783 * 119.99873 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00037 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99737 * 180.02562 * 10 9 7 13 13 C 1.53006 * 109.47079 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47294 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47170 * 180.02562 * 14 13 12 16 16 C 1.38425 * 120.02136 * 90.00332 * 15 14 13 17 17 F 1.35101 * 120.01402 * 359.70506 * 16 15 14 18 18 C 1.38476 * 119.97328 * 179.97438 * 16 15 14 19 19 C 1.38207 * 120.02410 * 0.02562 * 18 16 15 20 20 C 1.38207 * 120.05360 * 359.97438 * 19 18 16 21 21 C 1.38412 * 120.02814 * 269.97965 * 15 14 13 22 22 F 1.35096 * 120.01191 * 0.02562 * 21 15 14 23 23 H 0.97001 * 119.99712 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00367 * 0.02562 * 9 7 2 25 25 H 1.08999 * 109.47479 * 60.00288 * 12 10 9 26 26 H 1.08994 * 109.47373 * 299.99615 * 12 10 9 27 27 H 1.09008 * 109.46613 * 60.00213 * 13 12 10 28 28 H 1.08994 * 109.47241 * 300.00894 * 13 12 10 29 29 H 1.09008 * 109.46866 * 60.00674 * 14 13 12 30 30 H 1.09006 * 109.47655 * 300.00535 * 14 13 12 31 31 H 1.08001 * 119.98752 * 179.97438 * 18 16 15 32 32 H 1.08000 * 119.97200 * 180.02562 * 19 18 16 33 33 H 1.07995 * 119.99247 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3707 0.0011 11 8 3.4472 -3.4210 0.0001 12 6 5.5606 -2.3706 0.0022 13 6 6.0707 -3.8132 0.0026 14 6 7.6006 -3.8132 0.0032 15 6 8.1029 -5.2340 0.0029 16 6 8.3343 -5.8866 -1.1957 17 9 8.1041 -5.2521 -2.3660 18 6 8.7963 -7.1920 -1.1948 19 6 9.0260 -7.8435 0.0023 20 6 8.7954 -7.1929 1.1997 21 6 8.3338 -5.8873 1.2012 22 9 8.1084 -5.2516 2.3717 23 1 -0.4850 0.8401 -0.0004 24 1 3.8649 -0.3634 0.0014 25 1 5.9233 -1.8573 0.8927 26 1 5.9247 -1.8565 -0.8872 27 1 5.7080 -4.3270 -0.8877 28 1 5.7066 -4.3271 0.8922 29 1 7.9636 -3.2993 0.8933 30 1 7.9644 -3.2994 -0.8867 31 1 8.9765 -7.7015 -2.1299 32 1 9.3868 -8.8614 0.0020 33 1 8.9748 -7.7030 2.1345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594257894.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:16 Heat of formation + Delta-G solvation = -139.053566 kcal Electronic energy + Delta-G solvation = -19519.078616 eV Core-core repulsion = 15986.279938 eV Total energy + Delta-G solvation = -3532.798678 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.99869 -49.99491 -40.41287 -39.80193 -36.39652 -35.74182 -33.79264 -32.26592 -31.23355 -28.62253 -26.50427 -23.83713 -23.83318 -22.09900 -21.24938 -20.17629 -19.11521 -18.36961 -17.74014 -17.08520 -16.89694 -16.61249 -16.59298 -16.50468 -16.27694 -15.51566 -15.36489 -14.88014 -14.80190 -14.40703 -14.35875 -13.71765 -13.43786 -13.24937 -12.95792 -12.87022 -12.57484 -12.55365 -12.43407 -12.00519 -11.96862 -11.68892 -11.54861 -10.49630 -10.28169 -9.82112 -9.73238 -8.44245 -6.05720 -0.00710 0.00851 1.29239 1.34395 1.43739 1.92444 2.21407 2.38922 2.91170 2.93067 3.12372 3.44991 3.50419 3.68886 3.91719 4.00315 4.11172 4.19407 4.25778 4.55268 4.58353 4.72041 4.74991 4.88575 4.95074 5.00915 5.08194 5.21563 5.24458 5.31709 5.52758 5.82110 5.91887 6.55240 6.84099 7.36022 7.92805 8.73585 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.033879 B = 0.003648 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.260449 B = 7672.682196 C = 7839.446723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.967 3.033 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.231 1.231 7 C -0.335 4.335 8 H 0.053 0.947 9 N -0.589 5.589 10 C 0.444 3.556 11 O -0.631 6.631 12 C -0.120 4.120 13 C -0.085 4.085 14 C -0.074 4.074 15 C -0.167 4.167 16 C 0.107 3.893 17 F -0.140 7.140 18 C -0.160 4.160 19 C -0.057 4.057 20 C -0.160 4.160 21 C 0.107 3.893 22 F -0.140 7.140 23 H 0.280 0.720 24 H 0.391 0.609 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.165 0.835 32 H 0.182 0.818 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.702 -9.697 0.026 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.214 4.214 3 Si 0.786 3.214 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.154 1.154 7 C -0.464 4.464 8 H 0.071 0.929 9 N -0.230 5.230 10 C 0.233 3.767 11 O -0.517 6.517 12 C -0.160 4.160 13 C -0.123 4.123 14 C -0.111 4.111 15 C -0.169 4.169 16 C 0.088 3.912 17 F -0.118 7.118 18 C -0.179 4.179 19 C -0.075 4.075 20 C -0.179 4.179 21 C 0.088 3.912 22 F -0.118 7.118 23 H 0.090 0.910 24 H 0.227 0.773 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.182 0.818 32 H 0.200 0.800 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 25.078 -10.225 0.027 27.083 hybrid contribution -0.715 1.196 0.001 1.394 sum 24.363 -9.029 0.028 25.982 Atomic orbital electron populations 1.69810 1.08180 1.29366 1.50053 1.26165 0.96523 1.02829 0.95846 0.85339 0.79491 0.76477 0.80065 1.17991 1.19790 1.15424 1.19049 0.81679 0.94970 1.50692 0.92885 1.42095 1.05828 1.07726 1.67373 1.21212 0.91516 0.83121 0.80810 1.90529 1.72019 1.33064 1.56111 1.21561 0.88988 0.99359 1.06110 1.21095 0.94075 0.95491 1.01616 1.20479 0.94175 0.91505 1.04980 1.20034 1.05703 0.99294 0.91891 1.17552 1.01247 0.92281 0.80162 1.91498 1.92302 1.82314 1.45704 1.21589 1.01945 0.92317 1.02014 1.21297 0.95534 1.01367 0.89294 1.21588 1.01930 0.92339 1.02011 1.17551 1.01272 0.92269 0.80158 1.91496 1.92389 1.82253 1.45686 0.91039 0.77276 0.86884 0.86781 0.93433 0.93453 0.88913 0.88893 0.81765 0.80049 0.81769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.96 21.66 0.30 -57.02 16 2 C -0.01 -0.85 5.50 84.93 0.47 -0.38 16 3 Si 0.97 39.53 27.74 68.60 1.90 41.44 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 7 C -0.33 -20.27 10.16 84.04 0.85 -19.42 16 8 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -28.97 5.09 -306.99 -1.56 -30.54 16 10 C 0.44 21.13 7.78 87.65 0.68 21.81 16 11 O -0.63 -36.86 15.56 -3.06 -0.05 -36.91 16 12 C -0.12 -3.83 5.70 29.85 0.17 -3.66 16 13 C -0.08 -2.70 4.49 30.59 0.14 -2.56 16 14 C -0.07 -1.78 4.99 29.85 0.15 -1.63 16 15 C -0.17 -3.95 5.15 -19.78 -0.10 -4.05 16 16 C 0.11 2.34 7.24 22.37 0.16 2.50 16 17 F -0.14 -3.44 16.48 44.97 0.74 -2.70 16 18 C -0.16 -2.42 10.03 22.32 0.22 -2.19 16 19 C -0.06 -0.66 10.04 22.25 0.22 -0.43 16 20 C -0.16 -2.42 10.03 22.32 0.22 -2.19 16 21 C 0.11 2.34 7.24 22.37 0.16 2.50 16 22 F -0.14 -3.45 16.48 44.97 0.74 -2.71 16 23 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 24 H 0.39 15.82 5.76 -92.71 -0.53 15.29 16 25 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 28 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 29 H 0.09 1.97 7.64 -2.38 -0.02 1.96 16 30 H 0.09 1.97 7.64 -2.38 -0.02 1.96 16 31 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -80.02 297.76 5.98 -74.04 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.55 Total: 24.10 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 3.35 Total: -9.71 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -1.26 Total: -87.55 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.05 Total: -36.91 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.48 Total: -5.41 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.44 kcal Total: -80.02 5.98 -74.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594257894.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.017 kcal (2) G-P(sol) polarization free energy of solvation -80.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds