Wall clock time and date at job start Mon Mar 30 2020 01:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47155 * 2 1 4 4 C 1.36958 * 119.99997 * 86.11922 * 3 2 1 5 5 H 1.08000 * 120.00000 * 173.18668 * 4 3 2 6 6 C 1.38964 * 120.00331 * 353.19186 * 4 3 2 7 7 N 1.31418 * 119.99971 * 345.34315 * 6 4 3 8 8 Si 1.86793 * 120.00471 * 165.34266 * 6 4 3 9 9 H 1.48506 * 109.47239 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47745 * 119.99916 * 8 6 4 11 11 H 1.48503 * 109.47286 * 240.00244 * 8 6 4 12 12 C 1.34781 * 120.00081 * 266.12504 * 3 2 1 13 13 O 1.21655 * 119.99402 * 5.24219 * 12 3 2 14 14 C 1.47285 * 120.00032 * 185.24947 * 12 3 2 15 15 C 1.47054 * 127.14879 * 311.02826 * 14 12 3 16 16 C 1.35134 * 105.88573 * 180.02562 * 15 14 12 17 17 S 1.76202 * 125.51448 * 179.97438 * 16 15 14 18 18 C 1.81397 * 102.99787 * 180.02562 * 17 16 15 19 19 O 1.34321 * 108.96778 * 0.02562 * 16 15 14 20 20 C 1.33963 * 110.90405 * 359.72581 * 19 16 15 21 21 C 1.50696 * 125.73097 * 180.32182 * 20 19 16 22 22 H 1.09000 * 109.47146 * 300.00186 * 1 2 3 23 23 H 1.09001 * 109.47027 * 60.00291 * 1 2 3 24 24 H 1.09002 * 109.47184 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47027 * 119.99709 * 2 1 3 26 26 H 1.09000 * 109.47146 * 239.99814 * 2 1 3 27 27 H 0.96995 * 120.00507 * 180.02562 * 7 6 4 28 28 H 1.07997 * 127.05792 * 0.02562 * 15 14 12 29 29 H 1.09002 * 109.46723 * 179.97438 * 18 17 16 30 30 H 1.08993 * 109.47692 * 299.99782 * 18 17 16 31 31 H 1.09002 * 109.47219 * 60.00674 * 18 17 16 32 32 H 1.08995 * 109.47120 * 270.14641 * 21 20 19 33 33 H 1.08997 * 109.47109 * 30.14556 * 21 20 19 34 34 H 1.08996 * 109.47339 * 150.14995 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1709 2.0536 1.1834 5 1 2.6332 3.0296 1.1942 6 6 1.7311 1.4800 2.3702 7 7 0.9221 0.4448 2.3395 8 14 2.2895 2.1804 4.0094 9 1 3.1915 3.3361 3.7724 10 1 1.1054 2.6272 4.7861 11 1 3.0163 1.1344 4.7728 12 6 2.3173 1.9903 -1.1646 13 8 2.0923 1.4287 -2.2200 14 6 2.9167 3.3357 -1.1593 15 6 2.4543 4.5110 -0.4061 16 6 3.3108 5.5092 -0.7157 17 16 3.2316 7.1558 -0.0933 18 6 4.6459 7.9626 -0.8928 19 8 4.2317 5.0434 -1.5755 20 6 4.0190 3.7494 -1.8490 21 6 4.8552 2.8948 -2.7661 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 0.6148 0.0446 3.1678 28 1 1.6045 4.5652 0.2582 29 1 4.6965 9.0044 -0.5762 30 1 5.5651 7.4509 -0.6078 31 1 4.5257 7.9177 -1.9753 32 1 4.4607 2.9565 -3.7803 33 1 5.8856 3.2501 -2.7548 34 1 4.8242 1.8595 -2.4267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596920136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:22 Heat of formation + Delta-G solvation = -1.920577 kcal Electronic energy + Delta-G solvation = -18849.866602 eV Core-core repulsion = 15876.854843 eV Total energy + Delta-G solvation = -2973.011759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89159 -38.34688 -35.07799 -32.54578 -31.57573 -31.32809 -29.59450 -29.05309 -26.49688 -24.86236 -23.08258 -21.52598 -20.17191 -19.12315 -18.15044 -16.27123 -15.95510 -15.66994 -15.26727 -14.44049 -14.25294 -14.00380 -13.66711 -13.54381 -13.21200 -12.66846 -12.65299 -12.57942 -12.33290 -12.19447 -11.74645 -11.30451 -11.13307 -11.00386 -10.69160 -10.60371 -10.43307 -10.23923 -9.80324 -9.50600 -8.85860 -8.74967 -8.42752 -7.78625 -7.06963 -6.28795 -3.87365 1.40068 1.99883 2.02304 2.70243 3.11626 3.20764 3.25647 3.77644 4.04114 4.08819 4.82433 4.97979 5.01596 5.07641 5.29110 5.57977 5.64777 5.74433 5.84638 6.03610 6.13744 6.33774 6.50322 6.64653 6.84046 6.93279 6.97113 7.10764 7.35606 7.43677 7.51230 7.73962 7.98210 8.47983 9.05623 9.51554 9.90924 10.59462 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.007614 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.823706 B = 3676.602664 C = 4848.096694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.138 3.862 3 N -0.425 5.425 4 C -0.324 4.324 5 H 0.108 0.892 6 C 0.029 3.971 7 N -0.861 5.861 8 Si 0.919 3.081 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.510 3.490 13 O -0.607 6.607 14 C -0.159 4.159 15 C -0.124 4.124 16 C -0.055 4.055 17 S -0.036 6.036 18 C -0.149 4.149 19 O -0.182 6.182 20 C 0.021 3.979 21 C -0.061 4.061 22 H 0.100 0.900 23 H 0.017 0.983 24 H 0.030 0.970 25 H 0.096 0.904 26 H 0.037 0.963 27 H 0.266 0.734 28 H 0.162 0.838 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 9.243 -2.506 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 N -0.141 5.141 4 C -0.452 4.452 5 H 0.126 0.874 6 C -0.174 4.174 7 N -0.501 5.501 8 Si 0.746 3.254 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.205 1.205 12 C 0.298 3.702 13 O -0.496 6.496 14 C -0.164 4.164 15 C -0.152 4.152 16 C -0.213 4.213 17 S 0.200 5.800 18 C -0.317 4.317 19 O -0.081 6.081 20 C -0.034 4.034 21 C -0.117 4.117 22 H 0.119 0.881 23 H 0.037 0.963 24 H 0.049 0.951 25 H 0.114 0.886 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.179 0.821 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.547 9.556 -2.194 11.265 hybrid contribution 0.875 -0.274 0.266 0.955 sum 6.422 9.283 -1.928 11.451 Atomic orbital electron populations 1.22207 0.96455 0.99429 1.01866 1.21309 0.94917 0.82241 1.00000 1.43792 1.53512 1.11881 1.04874 1.20067 1.38195 1.03484 0.83482 0.87417 1.25264 0.95556 0.96810 0.99726 1.70239 1.29391 1.23122 1.27324 0.85965 0.78804 0.79050 0.81627 1.19112 1.20631 1.20550 1.16905 0.84875 0.84339 0.84049 1.90635 1.60953 1.66958 1.31036 1.21265 0.98174 0.96035 1.00970 1.22730 1.01083 0.89738 1.01609 1.23666 0.96515 0.99099 1.02026 1.85599 1.38387 0.96818 1.59169 1.23537 0.99912 1.03790 1.04507 1.83773 1.47049 1.25136 1.52192 1.22523 0.98243 0.81467 1.01128 1.20235 0.97001 0.97479 0.96998 0.88130 0.96350 0.95096 0.88619 0.94485 0.92295 0.82069 0.87523 0.89595 0.89647 0.89987 0.91266 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.53 37.16 0.35 -3.05 16 2 C 0.14 3.46 5.39 -4.04 -0.02 3.43 16 3 N -0.42 -11.04 2.63 -116.08 -0.30 -11.35 16 4 C -0.32 -8.30 8.94 -14.99 -0.13 -8.44 16 5 H 0.11 2.70 4.88 -52.49 -0.26 2.44 16 6 C 0.03 0.73 5.19 -17.46 -0.09 0.64 16 7 N -0.86 -21.55 7.38 55.50 0.41 -21.14 16 8 Si 0.92 19.49 29.58 -169.99 -5.03 14.46 16 9 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 C 0.51 13.09 7.13 -12.58 -0.09 13.00 16 13 O -0.61 -16.69 16.55 5.23 0.09 -16.60 16 14 C -0.16 -3.60 5.33 -103.29 -0.55 -4.15 16 15 C -0.12 -2.58 8.77 -37.11 -0.33 -2.91 16 16 C -0.05 -1.01 7.32 29.63 0.22 -0.79 16 17 S -0.04 -0.51 22.74 -107.50 -2.44 -2.95 16 18 C -0.15 -1.51 10.45 101.05 1.06 -0.46 16 19 O -0.18 -3.34 10.19 6.57 0.07 -3.28 16 20 C 0.02 0.42 7.38 -34.96 -0.26 0.16 16 21 C -0.06 -0.96 10.12 36.00 0.36 -0.60 16 22 H 0.10 2.58 5.73 -51.93 -0.30 2.28 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 2.45 6.09 -51.93 -0.32 2.14 16 26 H 0.04 0.92 7.38 -51.93 -0.38 0.54 16 27 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 28 H 0.16 3.33 7.69 -52.49 -0.40 2.92 16 29 H 0.11 0.80 8.14 -51.92 -0.42 0.37 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.55 7.92 -51.93 -0.41 1.14 16 LS Contribution 300.93 15.07 4.53 4.53 Total: -1.00 -29.29 300.93 -6.32 -35.61 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.16 Total: 3.87 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 0.52 Total: -3.15 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.11 Total: -32.49 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.15 Total: -19.88 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -2.44 Total: -2.95 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.29 -6.32 -35.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596920136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.688 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds