Wall clock time and date at job start Mon Mar 30 2020 00:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76200 * 100.00194 * 2 1 4 4 C 1.36525 * 125.61429 * 179.97438 * 3 2 1 5 5 C 1.39646 * 107.19044 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.62587 * 180.02562 * 5 4 3 7 7 C 1.38008 * 106.75051 * 0.02562 * 5 4 3 8 8 C 1.41625 * 126.01001 * 179.97438 * 7 5 4 9 9 O 1.21803 * 120.00165 * 0.02562 * 8 7 5 10 10 N 1.34775 * 119.99411 * 179.97438 * 8 7 5 11 11 C 1.46506 * 119.99693 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46660 * 35.00912 * 11 10 8 13 13 C 1.52997 * 109.47289 * 275.00198 * 11 10 8 14 14 C 1.50708 * 109.46796 * 155.00272 * 11 10 8 15 15 H 1.07995 * 119.99755 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99729 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99909 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46921 * 60.00420 * 18 16 14 20 20 H 1.48496 * 109.46933 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46946 * 300.00103 * 18 16 14 22 22 O 1.34150 * 125.61411 * 0.32876 * 3 2 1 23 23 H 1.09003 * 109.47334 * 300.00515 * 1 2 3 24 24 H 1.09002 * 109.46370 * 60.00263 * 1 2 3 25 25 H 1.08994 * 109.47443 * 179.97438 * 1 2 3 26 26 H 1.08003 * 126.40456 * 0.04204 * 4 3 2 27 27 H 1.09006 * 109.47283 * 269.97778 * 6 5 4 28 28 H 1.08995 * 109.47361 * 29.97855 * 6 5 4 29 29 H 1.09005 * 109.47235 * 149.97739 * 6 5 4 30 30 H 0.97000 * 120.00190 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 32 32 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 33 33 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 34 34 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 6 3.3472 2.3254 0.0005 5 6 3.1426 3.7068 0.0009 6 6 4.2073 4.7733 0.0010 7 6 1.7771 3.9067 0.0012 8 6 1.1192 5.1609 0.0022 9 8 1.7703 6.1902 0.0023 10 7 -0.2275 5.2152 0.0019 11 6 -0.9081 6.5126 0.0034 12 1 -0.3314 7.2261 -0.5850 13 6 -1.0341 7.0207 1.4411 14 6 -2.2817 6.3599 -0.5976 15 1 -2.6144 5.3931 -0.9455 16 6 -3.1135 7.4543 -0.7033 17 7 -2.7080 8.6317 -0.2801 18 14 -4.8157 7.2653 -1.4489 19 1 -5.6020 6.2933 -0.6475 20 1 -5.5052 8.5805 -1.4484 21 1 -4.6929 6.7719 -2.8442 22 8 1.1777 2.6940 0.0063 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 4.3009 1.8186 0.0003 27 1 4.4640 5.0305 1.0287 28 1 5.0939 4.4017 -0.5128 29 1 3.8343 5.6592 -0.5129 30 1 -0.7460 4.3955 0.0014 31 1 -1.5401 7.9861 1.4422 32 1 -0.0407 7.1311 1.8757 33 1 -1.6109 6.3071 2.0295 34 1 -3.2933 9.4016 -0.3541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596995693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:52 Heat of formation + Delta-G solvation = -48.795712 kcal Electronic energy + Delta-G solvation = -18275.057621 eV Core-core repulsion = 15300.013204 eV Total energy + Delta-G solvation = -2975.044417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.71848 -40.48530 -36.92894 -35.24870 -34.32800 -32.04599 -30.65514 -30.02077 -28.51964 -27.36896 -24.84519 -23.02496 -21.85944 -21.17495 -19.63868 -18.60945 -17.83395 -17.69208 -17.20155 -16.25568 -15.94300 -15.64252 -15.18043 -14.70196 -14.51644 -14.44357 -14.27843 -14.04739 -13.86005 -13.73523 -13.36239 -13.02553 -12.90688 -12.78070 -12.69733 -12.30648 -12.17398 -11.96824 -11.17113 -11.13036 -11.03344 -10.62788 -10.39455 -9.84821 -8.45044 -8.20089 -6.38146 -0.23881 0.03882 0.85213 1.15219 1.43412 1.45710 1.53738 2.13637 2.22306 2.36385 2.63715 3.10140 3.66538 3.93214 4.17429 4.19157 4.24450 4.40786 4.60587 4.72650 4.77517 4.85290 4.87991 4.89977 5.03690 5.11001 5.30519 5.35669 5.53394 5.57503 5.68111 5.87050 6.04209 6.65934 6.79966 7.20986 7.37543 8.86229 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.005101 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.393089 B = 5488.221704 C = 6585.638743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 S 0.018 5.982 3 C -0.010 4.010 4 C -0.192 4.192 5 C -0.066 4.066 6 C -0.093 4.093 7 C -0.116 4.116 8 C 0.584 3.416 9 O -0.569 6.569 10 N -0.698 5.698 11 C 0.270 3.730 12 H 0.006 0.994 13 C -0.133 4.133 14 C -0.552 4.552 15 H 0.069 0.931 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 0.974 3.026 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.271 1.271 22 O -0.161 6.161 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.140 0.860 26 H 0.192 0.808 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.402 0.598 31 H 0.071 0.929 32 H 0.014 0.986 33 H 0.038 0.962 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -18.596 0.980 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 S 0.256 5.744 3 C -0.173 4.173 4 C -0.219 4.219 5 C -0.070 4.070 6 C -0.149 4.149 7 C -0.172 4.172 8 C 0.373 3.627 9 O -0.453 6.453 10 N -0.345 5.345 11 C 0.167 3.833 12 H 0.024 0.976 13 C -0.192 4.192 14 C -0.590 4.590 15 H 0.087 0.913 16 C -0.183 4.183 17 N -0.552 5.552 18 Si 0.798 3.202 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.197 1.197 22 O -0.059 6.059 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.158 0.842 26 H 0.209 0.791 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.236 0.764 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.029 -18.726 1.000 20.813 hybrid contribution -1.890 1.154 -0.289 2.234 sum 7.138 -17.572 0.711 18.980 Atomic orbital electron populations 1.23793 0.92955 1.09234 1.07048 1.85750 1.08725 0.88101 1.91817 1.25448 0.90310 0.95314 1.06264 1.21667 0.98389 0.91749 1.10069 1.21145 0.92602 0.96250 0.97005 1.20476 0.95497 0.95446 1.03476 1.21053 0.93106 0.83566 1.19434 1.15732 0.82860 0.86420 0.77710 1.90796 1.66034 1.34391 1.54092 1.46305 1.05410 1.11241 1.71541 1.18457 0.91205 0.79938 0.93675 0.97584 1.21899 0.97739 1.02420 0.97116 1.21454 0.99351 0.96188 1.41973 0.91270 1.25782 1.02690 0.94487 0.95326 1.70034 1.38316 1.00347 1.46550 0.85376 0.78412 0.77536 0.78890 1.18896 1.20822 1.19664 1.84249 1.35675 1.13876 1.72061 0.89179 0.89280 0.84152 0.79127 0.89987 0.88247 0.91837 0.76390 0.91005 0.96653 0.94309 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.08 113.37 1.14 -1.16 16 2 S 0.02 0.32 22.90 -56.49 -1.29 -0.98 16 3 C -0.01 -0.26 7.29 67.42 0.49 0.24 16 4 C -0.19 -4.70 10.77 22.21 0.24 -4.46 16 5 C -0.07 -2.02 6.21 -19.58 -0.12 -2.15 16 6 C -0.09 -2.55 9.78 71.24 0.70 -1.85 16 7 C -0.12 -4.26 6.96 23.05 0.16 -4.10 16 8 C 0.58 26.12 7.56 85.08 0.64 26.76 16 9 O -0.57 -28.74 14.28 -4.68 -0.07 -28.80 16 10 N -0.70 -31.88 5.06 -455.01 -2.30 -34.18 16 11 C 0.27 14.52 2.56 44.25 0.11 14.63 16 12 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 13 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 14 C -0.55 -29.94 8.73 25.60 0.22 -29.72 16 15 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 16 C 0.02 0.96 5.30 84.65 0.45 1.41 16 17 N -0.91 -52.60 11.32 21.45 0.24 -52.35 16 18 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 O -0.16 -5.09 9.74 -10.91 -0.11 -5.20 16 23 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.14 1.15 8.14 -2.40 -0.02 1.13 16 26 H 0.19 3.26 8.06 -2.91 -0.02 3.23 16 27 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 2.15 6.42 -2.38 -0.02 2.13 16 30 H 0.40 16.34 8.19 -92.71 -0.76 15.58 16 31 H 0.07 4.03 6.07 -2.39 -0.01 4.01 16 32 H 0.01 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -66.73 308.02 3.57 -63.16 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.36 Total: 20.77 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.70 Total: -6.65 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -2.06 Total: -86.53 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.17 Total: -34.00 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.29 Total: -0.98 kcal Total: -66.73 3.57 -63.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.366 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds