Wall clock time and date at job start Mon Mar 30 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76200 * 100.00045 * 2 1 4 4 C 1.36521 * 125.61721 * 180.02562 * 3 2 1 5 5 C 1.39654 * 107.19424 * 180.02562 * 4 3 2 6 6 C 1.50698 * 126.62774 * 179.97438 * 5 4 3 7 7 C 1.38002 * 106.74842 * 359.97438 * 5 4 3 8 8 C 1.41627 * 126.01236 * 179.97438 * 7 5 4 9 9 O 1.21803 * 119.99940 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99916 * 179.72729 * 8 7 5 11 11 C 1.46490 * 120.00004 * 180.27868 * 10 8 7 12 12 C 1.52997 * 109.47360 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47642 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99468 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00092 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00347 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99775 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46768 * 60.00435 * 17 15 13 19 19 H 1.48498 * 109.47326 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47259 * 300.00508 * 17 15 13 21 21 O 1.34162 * 125.61279 * 0.28755 * 3 2 1 22 22 H 1.08997 * 109.47436 * 59.99351 * 1 2 3 23 23 H 1.08996 * 109.47362 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46692 * 299.99832 * 1 2 3 25 25 H 1.08000 * 126.40179 * 0.02562 * 4 3 2 26 26 H 1.09005 * 109.47049 * 270.00506 * 6 5 4 27 27 H 1.09004 * 109.46921 * 30.00101 * 6 5 4 28 28 H 1.09000 * 109.47201 * 150.00309 * 6 5 4 29 29 H 0.97000 * 119.99736 * 0.27136 * 10 8 7 30 30 H 1.09007 * 109.47204 * 299.99306 * 11 10 8 31 31 H 1.08997 * 109.47605 * 59.99788 * 11 10 8 32 32 H 1.09006 * 109.46910 * 299.99536 * 12 11 10 33 33 H 1.09002 * 109.47542 * 59.99386 * 12 11 10 34 34 H 0.96991 * 119.99882 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3470 2.3255 -0.0005 5 6 3.1424 3.7070 0.0003 6 6 4.2071 4.7735 0.0007 7 6 1.7769 3.9068 0.0007 8 6 1.1189 5.1609 0.0020 9 8 1.7700 6.1903 0.0025 10 7 -0.2278 5.2153 -0.0033 11 6 -0.9084 6.5125 -0.0081 12 6 -2.4227 6.2939 -0.0143 13 6 -3.1229 7.6283 -0.0186 14 1 -2.5456 8.5411 -0.0175 15 6 -4.5006 7.6839 -0.0250 16 7 -5.2036 6.5725 -0.0269 17 14 -5.3685 9.3381 -0.0296 18 1 -4.9730 10.1011 -1.2407 19 1 -6.8382 9.1259 -0.0358 20 1 -4.9842 10.1022 1.1843 21 8 1.1775 2.6940 0.0055 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 4.3007 1.8188 -0.0013 26 1 4.4640 5.0300 1.0285 27 1 5.0935 4.4021 -0.5136 28 1 3.8338 5.6597 -0.5126 29 1 -0.7462 4.3955 -0.0041 30 1 -0.6258 7.0744 0.8821 31 1 -0.6188 7.0715 -0.8979 32 1 -2.7050 5.7322 -0.9048 33 1 -2.7128 5.7346 0.8752 34 1 -6.1727 6.6117 -0.0310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597491021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:49 Heat of formation + Delta-G solvation = -56.038010 kcal Electronic energy + Delta-G solvation = -17729.665234 eV Core-core repulsion = 14754.306767 eV Total energy + Delta-G solvation = -2975.358467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.76200 -40.58918 -36.82422 -35.32421 -34.74832 -32.30290 -31.10702 -30.04481 -28.80630 -26.76297 -24.50907 -23.02980 -22.23892 -21.22057 -19.40500 -18.58499 -18.27555 -17.77654 -16.81711 -16.52378 -16.31410 -16.01886 -15.26041 -14.87227 -14.71823 -14.49691 -14.36205 -14.18313 -14.03823 -13.87915 -13.39460 -13.26685 -12.94434 -12.74717 -12.55638 -12.28201 -11.99548 -11.71904 -11.52491 -11.16212 -11.11089 -10.62618 -10.46632 -10.07038 -8.48899 -8.25442 -6.36549 -0.30971 0.01859 0.81996 1.11095 1.41613 1.44184 1.52094 2.03062 2.09348 2.32449 2.46242 3.09415 3.63305 3.82275 4.13212 4.17079 4.22009 4.36711 4.41491 4.44684 4.61881 4.77395 4.80345 4.83986 4.89221 5.05622 5.16724 5.31604 5.44677 5.52845 5.58874 5.75383 6.12339 6.44903 6.76038 7.01292 7.33006 8.86491 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.003942 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.963422 B = 7101.616998 C = 8267.515977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 S 0.019 5.981 3 C -0.006 4.006 4 C -0.193 4.193 5 C -0.058 4.058 6 C -0.094 4.094 7 C -0.123 4.123 8 C 0.593 3.407 9 O -0.558 6.558 10 N -0.712 5.712 11 C 0.140 3.860 12 C 0.023 3.977 13 C -0.548 4.548 14 H 0.062 0.938 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.268 1.268 21 O -0.163 6.163 22 H 0.089 0.911 23 H 0.139 0.861 24 H 0.089 0.911 25 H 0.191 0.809 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.407 0.593 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.706 -15.062 0.057 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 S 0.257 5.743 3 C -0.169 4.169 4 C -0.220 4.220 5 C -0.063 4.063 6 C -0.150 4.150 7 C -0.178 4.178 8 C 0.383 3.617 9 O -0.441 6.441 10 N -0.362 5.362 11 C 0.017 3.983 12 C -0.015 4.015 13 C -0.586 4.586 14 H 0.080 0.920 15 C -0.191 4.191 16 N -0.567 5.567 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.192 1.192 21 O -0.061 6.061 22 H 0.108 0.892 23 H 0.157 0.843 24 H 0.108 0.892 25 H 0.208 0.792 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.242 0.758 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.292 -15.459 0.059 22.459 hybrid contribution -1.908 1.406 0.010 2.370 sum 14.384 -14.053 0.069 20.110 Atomic orbital electron populations 1.23801 0.93039 1.09249 1.07066 1.85815 1.08581 0.88288 1.91608 1.25454 0.90344 0.95235 1.05917 1.21694 0.98322 0.91932 1.10082 1.21169 0.92623 0.96179 0.96298 1.20509 0.95445 0.95431 1.03632 1.20940 0.93046 0.83580 1.20234 1.15593 0.82275 0.86529 0.77308 1.90817 1.65850 1.34110 1.53337 1.46136 1.05995 1.10836 1.73211 1.21335 0.93129 0.83320 1.00483 1.19135 0.89179 0.96953 0.96218 1.21431 0.92193 0.93221 1.51789 0.91977 1.25890 0.98314 1.00647 0.94273 1.70056 1.06849 1.28913 1.50881 0.85473 0.77095 0.79131 0.79206 1.19238 1.20595 1.19249 1.84265 1.35688 1.13949 1.72177 0.89201 0.84291 0.89207 0.79166 0.89814 0.88338 0.91365 0.75778 0.92766 0.92774 0.97513 0.97513 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 10.08 113.37 1.14 -1.09 16 2 S 0.02 0.30 22.90 -56.49 -1.29 -0.99 16 3 C -0.01 -0.14 7.29 67.42 0.49 0.35 16 4 C -0.19 -4.17 10.77 22.21 0.24 -3.93 16 5 C -0.06 -1.56 6.21 -19.58 -0.12 -1.68 16 6 C -0.09 -2.15 9.78 71.24 0.70 -1.46 16 7 C -0.12 -3.91 6.96 23.05 0.16 -3.75 16 8 C 0.59 22.39 7.59 85.08 0.65 23.04 16 9 O -0.56 -23.49 14.62 -4.68 -0.07 -23.56 16 10 N -0.71 -27.40 5.54 -472.10 -2.62 -30.02 16 11 C 0.14 6.23 5.61 86.38 0.48 6.71 16 12 C 0.02 1.17 5.09 29.85 0.15 1.32 16 13 C -0.55 -30.83 9.11 25.60 0.23 -30.60 16 14 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 15 C 0.01 0.43 5.46 84.65 0.46 0.89 16 16 N -0.93 -54.74 13.29 21.45 0.28 -54.45 16 17 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 O -0.16 -4.63 9.74 -11.10 -0.11 -4.74 16 22 H 0.09 1.36 8.14 -2.40 -0.02 1.34 16 23 H 0.14 1.14 8.14 -2.40 -0.02 1.12 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.07 1.92 6.42 -2.39 -0.02 1.90 16 29 H 0.41 14.34 8.12 -92.71 -0.75 13.59 16 30 H 0.05 2.45 8.14 -2.38 -0.02 2.44 16 31 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -66.72 312.83 3.17 -63.55 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.36 Total: 14.74 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 4.59 Total: -10.19 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.33 Total: -84.47 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.18 Total: -28.30 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.29 Total: -0.99 kcal Total: -66.72 3.17 -63.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597491021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.510 kcal (2) G-P(sol) polarization free energy of solvation -66.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds