Wall clock time and date at job start Mon Mar 30 2020 01:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76193 * 103.00186 * 2 1 4 4 C 1.35120 * 125.52855 * 180.02562 * 3 2 1 5 5 C 1.47058 * 105.88495 * 179.97438 * 4 3 2 6 6 C 1.47392 * 127.14828 * 179.97438 * 5 4 3 7 7 O 1.21612 * 119.99897 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99696 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99622 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00113 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99923 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47375 * 89.99678 * 16 14 12 18 18 H 1.48508 * 109.47196 * 209.99673 * 16 14 12 19 19 H 1.48504 * 109.47051 * 329.99297 * 16 14 12 20 20 C 1.36329 * 105.70547 * 0.21712 * 5 4 3 21 21 O 1.33948 * 108.56728 * 359.63829 * 20 5 4 22 22 H 1.09000 * 109.47165 * 59.99857 * 1 2 3 23 23 H 1.08997 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46762 * 300.00077 * 1 2 3 25 25 H 1.08008 * 127.06268 * 359.97123 * 4 3 2 26 26 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 27 27 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 28 28 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 29 29 H 1.09002 * 109.47153 * 300.00008 * 10 9 8 30 30 H 1.08998 * 109.47533 * 59.99637 * 10 9 8 31 31 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 32 32 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 33 33 H 0.97008 * 120.00167 * 179.97438 * 15 14 12 34 34 H 1.08008 * 125.71590 * 179.77150 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4585 2.2344 -0.0005 5 6 3.2885 3.6951 -0.0009 6 6 4.3524 4.7151 -0.0010 7 8 5.5202 4.3756 -0.0002 8 7 4.0311 6.0240 -0.0019 9 6 5.0887 7.0378 -0.0014 10 6 4.4587 8.4320 -0.0033 11 6 5.5631 9.4908 -0.0021 12 6 4.9426 10.8641 -0.0046 13 1 3.8678 10.9711 -0.0064 14 6 5.7467 11.9840 -0.0036 15 7 5.2052 13.1824 -0.0063 16 14 7.6055 11.7991 0.0002 17 1 8.1010 11.7493 -1.3988 18 1 8.2168 12.9571 0.7009 19 1 7.9767 10.5440 0.7018 20 6 1.9422 3.9099 0.0044 21 8 1.3210 2.7232 -0.0003 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.3900 1.6877 -0.0005 26 1 3.0998 6.2948 -0.0029 27 1 5.7057 6.9187 0.8892 28 1 5.7075 6.9179 -0.8907 29 1 3.8419 8.5508 -0.8941 30 1 3.8397 8.5523 0.8858 31 1 6.1795 9.3718 0.8889 32 1 6.1824 9.3708 -0.8911 33 1 5.7710 13.9704 -0.0052 34 1 1.4577 4.8752 0.0091 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601037906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:10 Heat of formation + Delta-G solvation = -57.507296 kcal Electronic energy + Delta-G solvation = -17063.473717 eV Core-core repulsion = 14088.051537 eV Total energy + Delta-G solvation = -2975.422180 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.57539 -40.52801 -37.01653 -35.20086 -34.13877 -33.21494 -31.14374 -29.87214 -28.89326 -25.50711 -23.78212 -22.89287 -22.23454 -21.25126 -19.83902 -18.90671 -17.47203 -17.43043 -17.06646 -16.83849 -16.64902 -16.19863 -15.52577 -15.36112 -14.79246 -14.64791 -14.46008 -14.29847 -13.94662 -13.77868 -13.65827 -13.10987 -12.74214 -12.70481 -11.95157 -11.78940 -11.77345 -11.59079 -11.32625 -11.23297 -11.16326 -10.75498 -10.68867 -10.12788 -8.48928 -8.28802 -6.32321 0.07656 0.22153 0.74351 0.94508 1.37385 1.39234 1.50693 2.03962 2.24637 2.36828 2.42609 3.07183 3.49535 3.85715 4.04135 4.20930 4.22560 4.24590 4.27828 4.35912 4.50395 4.75270 4.86095 4.89097 4.90990 5.03270 5.06722 5.33497 5.49533 5.56870 5.63448 5.65934 6.28031 6.50318 6.75894 7.14667 7.32558 8.87420 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.057505 B = 0.002708 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.798584 B =10335.917104 C =10791.662577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.034 6.034 3 C -0.035 4.035 4 C -0.153 4.153 5 C -0.246 4.246 6 C 0.583 3.417 7 O -0.586 6.586 8 N -0.708 5.708 9 C 0.126 3.874 10 C -0.099 4.099 11 C -0.014 4.014 12 C -0.528 4.528 13 H 0.040 0.960 14 C 0.004 3.996 15 N -0.950 5.950 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.248 1.248 20 C 0.057 3.943 21 O -0.168 6.168 22 H 0.094 0.906 23 H 0.135 0.865 24 H 0.094 0.906 25 H 0.156 0.844 26 H 0.415 0.585 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.019 0.981 33 H 0.266 0.734 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 -27.199 0.045 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.203 5.797 3 C -0.194 4.194 4 C -0.181 4.181 5 C -0.252 4.252 6 C 0.372 3.628 7 O -0.468 6.468 8 N -0.359 5.359 9 C 0.003 3.997 10 C -0.137 4.137 11 C -0.052 4.052 12 C -0.567 4.567 13 H 0.058 0.942 14 C -0.193 4.193 15 N -0.591 5.591 16 Si 0.769 3.231 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.172 1.172 20 C -0.017 4.017 21 O -0.064 6.064 22 H 0.113 0.887 23 H 0.154 0.846 24 H 0.113 0.887 25 H 0.173 0.827 26 H 0.253 0.747 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -10.811 -28.316 0.046 30.310 hybrid contribution -0.050 1.870 -0.020 1.870 sum -10.862 -26.446 0.026 28.590 Atomic orbital electron populations 1.23774 0.91316 1.09056 1.07185 1.85970 1.10011 0.90538 1.93202 1.24293 0.90049 0.93757 1.11260 1.22541 0.97350 0.91903 1.06331 1.21325 0.93990 0.93700 1.16184 1.17565 0.87495 0.82300 0.75474 1.90762 1.21568 1.82032 1.52398 1.45754 1.11328 1.04559 1.74277 1.21362 0.90010 0.86742 1.01601 1.21482 0.98661 0.91094 1.02502 1.19481 0.95698 0.93193 0.96827 1.21461 0.94020 0.91107 1.50068 0.94188 1.25969 1.04123 0.94844 0.94328 1.70054 1.37602 0.98655 1.52769 0.85722 0.79637 0.78558 0.79141 1.19321 1.21118 1.17162 1.25263 0.90364 0.89159 0.96938 1.83986 1.36573 1.13942 1.71934 0.88734 0.84635 0.88735 0.82655 0.74747 0.92292 0.92233 0.91334 0.91352 0.96121 0.96240 0.92545 0.72476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.45 113.37 1.18 0.19 16 2 S -0.03 -0.49 22.74 -56.49 -1.28 -1.77 16 3 C -0.04 -0.68 7.32 67.10 0.49 -0.19 16 4 C -0.15 -3.64 10.97 23.87 0.26 -3.38 16 5 C -0.25 -5.75 6.31 -19.00 -0.12 -5.87 16 6 C 0.58 17.14 7.81 86.65 0.68 17.82 16 7 O -0.59 -22.65 16.98 -4.07 -0.07 -22.72 16 8 N -0.71 -17.82 5.55 -466.40 -2.59 -20.40 16 9 C 0.13 3.93 5.67 86.38 0.49 4.42 16 10 C -0.10 -3.44 5.27 30.59 0.16 -3.28 16 11 C -0.01 -0.63 4.04 29.84 0.12 -0.51 16 12 C -0.53 -29.54 9.66 25.60 0.25 -29.29 16 13 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 14 C 0.00 0.24 5.47 84.65 0.46 0.71 16 15 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 16 Si 0.95 44.20 27.47 68.60 1.88 46.09 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 20 C 0.06 0.86 11.60 67.37 0.78 1.64 16 21 O -0.17 -2.84 10.19 0.76 0.01 -2.84 16 22 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 24 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 25 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 26 H 0.42 7.20 7.43 -92.71 -0.69 6.51 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 32 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 33 H 0.27 15.43 8.31 -92.70 -0.77 14.65 16 34 H 0.26 1.37 7.46 -2.91 -0.02 1.35 16 Total: -1.00 -75.15 313.24 3.38 -71.77 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.37 Total: 6.25 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 4.76 Total: -17.74 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -2.29 Total: -79.05 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.55 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -1.28 Total: -1.77 kcal Total: -75.15 3.38 -71.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.263 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds