Wall clock time and date at job start Mon Mar 30 2020 01:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76200 * 103.00254 * 2 1 4 4 C 1.35124 * 125.53368 * 179.97438 * 3 2 1 5 5 C 1.47051 * 105.88740 * 179.97438 * 4 3 2 6 6 C 1.47383 * 127.15072 * 179.97438 * 5 4 3 7 7 O 1.21608 * 120.00552 * 188.85445 * 6 5 4 8 8 N 1.34779 * 119.99446 * 8.84985 * 6 5 4 9 9 C 1.46493 * 120.00263 * 1.55877 * 8 6 5 10 10 C 1.46502 * 119.99495 * 181.55695 * 8 6 5 11 11 H 1.08997 * 109.47297 * 359.97438 * 10 8 6 12 12 C 1.53001 * 109.47159 * 239.99851 * 10 8 6 13 13 C 1.50697 * 109.47116 * 120.00145 * 10 8 6 14 14 H 1.08000 * 120.00132 * 359.97438 * 13 10 8 15 15 C 1.37877 * 120.00294 * 179.97438 * 13 10 8 16 16 N 1.31512 * 119.99743 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00418 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47179 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.46869 * 300.00133 * 17 15 13 20 20 H 1.48500 * 109.46831 * 60.00068 * 17 15 13 21 21 C 1.36332 * 105.70567 * 0.22686 * 5 4 3 22 22 O 1.33953 * 108.56798 * 359.63354 * 21 5 4 23 23 H 1.09003 * 109.47250 * 300.00043 * 1 2 3 24 24 H 1.08998 * 109.47335 * 59.99834 * 1 2 3 25 25 H 1.08993 * 109.47233 * 180.02562 * 1 2 3 26 26 H 1.08000 * 127.05419 * 359.97438 * 4 3 2 27 27 H 1.09006 * 109.47050 * 275.64653 * 9 8 6 28 28 H 1.08998 * 109.47159 * 35.64539 * 9 8 6 29 29 H 1.08997 * 109.47361 * 155.64956 * 9 8 6 30 30 H 1.08996 * 109.47278 * 300.00993 * 12 10 8 31 31 H 1.09007 * 109.46883 * 59.99803 * 12 10 8 32 32 H 1.08993 * 109.47313 * 179.97438 * 12 10 8 33 33 H 0.97005 * 120.00270 * 180.02562 * 16 15 13 34 34 H 1.08004 * 125.71694 * 179.77626 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4585 2.2346 0.0005 5 6 3.2884 3.6952 -0.0004 6 6 4.3522 4.7152 0.0003 7 8 4.0709 5.8873 0.1615 8 7 5.6370 4.3489 -0.1778 9 6 5.9725 2.9413 -0.4060 10 6 6.6980 5.3585 -0.1431 11 1 6.2596 6.3403 0.0358 12 6 7.4377 5.3673 -1.4824 13 6 7.6669 5.0312 0.9637 14 1 7.5081 4.1586 1.5799 15 6 8.7563 5.8456 1.1896 16 7 8.9495 6.9084 0.4395 17 14 9.9578 5.4394 2.5611 18 1 11.0331 6.4629 2.5963 19 1 9.2404 5.4310 3.8612 20 1 10.5545 4.1018 2.3162 21 6 1.9421 3.9100 0.0039 22 8 1.3208 2.7232 -0.0010 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 4.3899 1.6878 0.0013 27 1 6.0576 2.4281 0.5519 28 1 5.1884 2.4727 -1.0007 29 1 6.9210 2.8756 -0.9389 30 1 7.8759 4.3856 -1.6619 31 1 6.7368 5.6040 -2.2830 32 1 8.2267 6.1187 -1.4568 33 1 9.7161 7.4813 0.5982 34 1 1.4576 4.8752 0.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601038708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:53 Heat of formation + Delta-G solvation = -0.346474 kcal Electronic energy + Delta-G solvation = -18327.909428 eV Core-core repulsion = 15354.965928 eV Total energy + Delta-G solvation = -2972.943500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.40577 -38.82654 -35.35754 -33.45246 -32.27348 -29.90759 -29.36486 -29.10150 -26.38144 -25.20306 -23.51729 -21.85804 -20.60615 -19.35850 -17.26990 -16.55294 -16.26085 -16.21727 -15.92800 -15.21179 -14.50443 -14.31912 -14.14101 -13.88866 -13.55212 -13.14855 -12.85022 -12.52979 -12.37183 -12.05281 -11.53520 -11.09692 -11.02687 -10.97068 -10.75813 -10.67461 -10.25878 -10.14504 -10.06150 -9.38380 -9.21118 -9.07182 -8.41299 -7.66082 -7.46900 -6.05501 -4.13551 1.02319 1.50639 1.68582 2.05110 3.29859 3.34661 3.36604 3.42336 3.95174 3.96230 4.41969 4.73566 4.76280 5.02963 5.04945 5.23224 5.27189 5.34534 5.60230 5.77668 5.89840 6.07283 6.26306 6.32189 6.77616 6.82088 6.88506 7.07378 7.45113 7.53629 7.72894 8.03060 8.20594 8.53103 8.83995 9.04801 9.52871 10.99826 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.004446 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.224665 B = 6295.895281 C = 6678.378316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.028 6.028 3 C -0.043 4.043 4 C -0.160 4.160 5 C -0.207 4.207 6 C 0.573 3.427 7 O -0.555 6.555 8 N -0.580 5.580 9 C 0.072 3.928 10 C 0.257 3.743 11 H 0.065 0.935 12 C -0.147 4.147 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.899 3.101 18 H -0.286 1.286 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.037 3.963 22 O -0.178 6.178 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.179 0.821 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.012 0.988 32 H 0.094 0.906 33 H 0.264 0.736 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.008 -13.621 -2.699 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.209 5.791 3 C -0.202 4.202 4 C -0.187 4.187 5 C -0.213 4.213 6 C 0.361 3.639 7 O -0.436 6.436 8 N -0.309 5.309 9 C -0.072 4.072 10 C 0.158 3.842 11 H 0.083 0.917 12 C -0.206 4.206 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.212 1.212 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.036 4.036 22 O -0.075 6.075 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.128 0.872 26 H 0.196 0.804 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -13.647 -13.912 -2.648 19.667 hybrid contribution 0.101 0.846 0.779 1.155 sum -13.547 -13.066 -1.869 18.913 Atomic orbital electron populations 1.23597 0.94657 1.07089 1.06589 1.85727 1.06451 0.93106 1.93846 1.24052 0.90805 0.92380 1.12945 1.23507 0.97055 0.92631 1.05524 1.21737 0.94591 0.93387 1.11546 1.17192 0.82231 0.86723 0.77795 1.90742 1.82603 1.18310 1.51947 1.48045 1.06316 1.08941 1.67647 1.22168 1.01655 0.82994 1.00352 1.18993 0.83451 0.87967 0.93829 0.91749 1.22102 1.00984 1.01464 0.96008 1.21286 1.08403 1.11132 1.15634 0.92291 1.24887 0.97665 0.94781 0.96409 1.69870 1.29481 1.14487 1.38822 0.86539 0.80415 0.78002 0.82346 1.21166 1.20243 1.20205 1.24391 0.91503 0.87383 1.00313 1.83926 1.36889 1.13962 1.72764 0.89376 0.89388 0.87195 0.80434 0.93158 0.91481 0.90643 0.95048 0.96898 0.88708 0.92622 0.76422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.45 101.05 1.06 0.01 16 2 S -0.03 -0.28 22.74 -107.50 -2.44 -2.73 16 3 C -0.04 -0.58 7.32 29.62 0.22 -0.36 16 4 C -0.16 -2.38 8.82 -37.12 -0.33 -2.71 16 5 C -0.21 -3.61 6.08 -103.29 -0.63 -4.24 16 6 C 0.57 12.64 7.67 -12.54 -0.10 12.54 16 7 O -0.56 -14.09 16.26 5.27 0.09 -14.01 16 8 N -0.58 -12.92 2.75 -176.55 -0.49 -13.41 16 9 C 0.07 1.27 7.92 59.84 0.47 1.74 16 10 C 0.26 6.72 2.63 -69.08 -0.18 6.54 16 11 H 0.06 1.94 6.90 -51.93 -0.36 1.58 16 12 C -0.15 -3.57 8.96 37.16 0.33 -3.24 16 13 C -0.53 -14.43 8.37 -34.44 -0.29 -14.72 16 14 H 0.06 1.60 7.65 -52.49 -0.40 1.19 16 15 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.04 0.55 11.90 30.05 0.36 0.91 16 22 O -0.18 -2.41 10.19 6.60 0.07 -2.34 16 23 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.18 2.39 4.88 -52.49 -0.26 2.14 16 27 H 0.05 0.84 7.63 -51.93 -0.40 0.45 16 28 H 0.07 1.00 4.89 -51.93 -0.25 0.75 16 29 H 0.07 1.33 6.44 -51.93 -0.33 1.00 16 30 H 0.03 0.70 6.67 -51.93 -0.35 0.35 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.22 2.63 8.06 -52.48 -0.42 2.21 16 LS Contribution 299.59 15.07 4.51 4.51 Total: -1.00 -31.99 299.59 -5.74 -37.73 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.91 Total: 0.55 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 0.82 Total: -1.84 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.14 Total: -38.10 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.15 Total: -16.35 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.44 Total: -2.73 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.99 -5.74 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.388 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds