Wall clock time and date at job start Mon Mar 30 2020 01:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34896 * 117.00107 * 2 1 4 4 O 1.21625 * 120.00377 * 359.97438 * 3 2 1 5 5 C 1.46400 * 119.99902 * 179.97438 * 3 2 1 6 6 C 1.36750 * 125.46167 * 179.97438 * 5 3 2 7 7 C 1.37411 * 113.28441 * 179.97438 * 6 5 3 8 8 C 1.33856 * 115.11565 * 0.02562 * 7 6 5 9 9 C 1.50700 * 124.52194 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.46758 * 90.00116 * 9 8 7 11 11 C 1.46900 * 110.99659 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47130 * 34.99963 * 11 10 9 13 13 C 1.53002 * 109.47187 * 275.00058 * 11 10 9 14 14 C 1.50700 * 109.47103 * 155.00031 * 11 10 9 15 15 H 1.08003 * 120.00210 * 34.99814 * 14 11 10 16 16 C 1.37879 * 120.00263 * 215.00543 * 14 11 10 17 17 N 1.31516 * 120.00246 * 184.91567 * 16 14 11 18 18 Si 1.86800 * 119.99701 * 4.90814 * 16 14 11 19 19 H 1.48502 * 109.47334 * 84.83582 * 18 16 14 20 20 H 1.48507 * 109.47178 * 204.83303 * 18 16 14 21 21 H 1.48500 * 109.47329 * 324.83281 * 18 16 14 22 22 S 1.70617 * 110.95833 * 0.22883 * 8 7 6 23 23 H 1.08994 * 109.47546 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47501 * 300.00808 * 1 2 3 25 25 H 1.09008 * 109.46856 * 60.00062 * 1 2 3 26 26 H 1.08002 * 123.35577 * 0.02562 * 6 5 3 27 27 H 1.08006 * 122.43934 * 180.02562 * 7 6 5 28 28 H 1.08994 * 109.47351 * 210.00211 * 9 8 7 29 29 H 1.08998 * 109.47087 * 330.00081 * 9 8 7 30 30 H 1.00903 * 110.99831 * 303.95361 * 10 9 8 31 31 H 1.08999 * 109.46923 * 175.05594 * 13 11 10 32 32 H 1.08999 * 109.46838 * 295.05051 * 13 11 10 33 33 H 1.09002 * 109.47072 * 55.05420 * 13 11 10 34 34 H 0.96999 * 120.00156 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2220 -0.0005 5 6 3.5264 1.2785 0.0006 6 6 4.2605 2.4323 0.0001 7 6 5.6170 2.2131 0.0014 8 6 5.9845 0.9260 0.0023 9 6 7.4129 0.4457 0.0032 10 7 7.8763 0.2904 1.3886 11 6 9.2684 -0.1771 1.4286 12 1 9.8221 0.2586 0.5969 13 6 9.2975 -1.7027 1.3172 14 6 9.9024 0.2438 2.7294 15 1 9.3128 0.2700 3.6339 16 6 11.2350 0.5956 2.7648 17 7 11.8126 0.8693 3.9142 18 14 12.2203 0.6832 1.1802 19 1 12.0287 2.0147 0.5511 20 1 13.6604 0.4805 1.4808 21 1 11.7552 -0.3758 0.2489 22 16 4.6200 -0.0983 -0.0048 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 3.8181 3.4176 -0.0003 27 1 6.3343 3.0205 0.0017 28 1 7.4739 -0.5139 -0.5100 29 1 8.0412 1.1731 -0.5107 30 1 7.7692 1.1510 1.9043 31 1 10.3314 -2.0430 1.2585 32 1 8.8203 -2.1402 2.1941 33 1 8.7618 -2.0118 0.4196 34 1 12.7502 1.1165 3.9392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861697.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:37 Heat of formation + Delta-G solvation = -55.049424 kcal Electronic energy + Delta-G solvation = -17506.114487 eV Core-core repulsion = 14530.798889 eV Total energy + Delta-G solvation = -2975.315598 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41797 -38.18438 -36.56446 -35.93271 -32.76335 -31.16987 -29.18059 -27.69824 -25.90348 -25.10764 -22.91119 -22.04966 -19.80203 -19.24461 -18.43978 -17.21061 -16.67652 -16.52684 -16.12454 -15.32436 -14.58653 -14.28452 -13.99723 -13.64383 -13.42348 -13.13057 -12.70699 -12.56562 -12.48822 -12.35588 -11.94698 -11.61116 -11.14590 -11.02246 -10.96867 -10.79262 -10.72469 -10.69054 -10.45271 -9.86119 -9.13568 -8.78451 -8.67061 -8.54294 -7.61090 -6.18941 -4.20529 0.36291 1.46950 1.97604 2.18759 2.51160 2.90120 3.18396 3.28408 3.28753 4.30251 4.70632 4.77464 4.87218 4.94693 5.09554 5.21938 5.27377 5.30867 5.33885 5.67584 5.86372 5.94108 6.09458 6.19949 6.28239 6.36605 6.55880 6.72054 6.77982 7.31111 7.52789 7.54391 7.79076 8.24030 8.53770 8.90407 9.43991 10.93897 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.040807 B = 0.003722 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.000174 B = 7521.105508 C = 7686.103793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.357 6.357 3 C 0.545 3.455 4 O -0.507 6.507 5 C -0.292 4.292 6 C -0.031 4.031 7 C -0.168 4.168 8 C -0.162 4.162 9 C 0.115 3.885 10 N -0.678 5.678 11 C 0.180 3.820 12 H 0.006 0.994 13 C -0.126 4.126 14 C -0.521 4.521 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.893 5.893 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 S 0.271 5.729 23 H 0.103 0.897 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.151 0.849 27 H 0.147 0.853 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.345 0.655 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.020 0.980 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.111 -1.312 -10.734 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.274 6.274 3 C 0.390 3.610 4 O -0.397 6.397 5 C -0.411 4.411 6 C -0.065 4.065 7 C -0.198 4.198 8 C -0.283 4.283 9 C -0.016 4.016 10 N -0.311 5.311 11 C 0.072 3.928 12 H 0.024 0.976 13 C -0.185 4.185 14 C -0.559 4.559 15 H 0.099 0.901 16 C -0.129 4.129 17 N -0.530 5.530 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.190 1.190 22 S 0.540 5.460 23 H 0.121 0.879 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.168 0.832 27 H 0.164 0.836 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.164 0.836 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.602 -3.219 -10.576 20.786 hybrid contribution 1.211 2.623 -0.949 3.040 sum -16.392 -0.597 -11.525 20.047 Atomic orbital electron populations 1.23277 0.75770 1.03811 1.02647 1.86598 1.23721 1.32349 1.84697 1.19684 0.87218 0.81573 0.72538 1.90869 1.66128 1.35889 1.46859 1.23459 0.93758 0.99541 1.24327 1.20686 0.92569 0.98212 0.95083 1.19963 0.95570 0.96749 1.07511 1.24665 1.02132 0.97959 1.03506 1.20585 0.86925 1.00034 0.94046 1.60859 1.25045 1.36679 1.08513 1.19603 0.83919 0.92514 0.96740 0.97619 1.21860 0.99422 0.98152 0.99045 1.21045 0.95400 1.45350 0.94109 0.90123 1.25036 0.97531 0.94352 0.95958 1.69895 1.12269 1.46178 1.24705 0.86895 0.79485 0.78947 0.84411 1.20295 1.21297 1.18957 1.83196 0.91838 1.05979 1.64973 0.87878 0.91743 0.91829 0.83151 0.83579 0.90315 0.93619 0.83573 0.93864 0.92801 0.96101 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.36 -4.21 10.42 -41.03 -0.43 -4.64 16 3 C 0.54 7.47 7.92 34.02 0.27 7.74 16 4 O -0.51 -7.85 16.64 -19.36 -0.32 -8.18 16 5 C -0.29 -3.93 6.45 -36.84 -0.24 -4.16 16 6 C -0.03 -0.39 10.01 -40.42 -0.40 -0.80 16 7 C -0.17 -2.18 9.99 -41.42 -0.41 -2.60 16 8 C -0.16 -2.27 5.79 -35.85 -0.21 -2.47 16 9 C 0.11 1.81 5.91 -4.97 -0.03 1.78 16 10 N -0.68 -13.13 6.29 -109.22 -0.69 -13.82 16 11 C 0.18 4.04 2.26 -68.86 -0.16 3.88 16 12 H 0.01 0.14 4.95 -51.93 -0.26 -0.12 16 13 C -0.13 -2.64 9.42 37.16 0.35 -2.29 16 14 C -0.52 -13.99 8.84 -34.44 -0.30 -14.30 16 15 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 18 Si 0.88 20.69 26.99 -169.99 -4.59 16.11 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.26 -5.99 6.82 56.52 0.39 -5.61 16 22 S 0.27 3.48 22.87 -107.50 -2.46 1.02 16 23 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.08 1.19 7.36 -51.93 -0.38 0.80 16 29 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 30 H 0.35 6.86 8.34 -39.29 -0.33 6.53 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.02 0.37 7.36 -51.93 -0.38 -0.01 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -30.37 310.09 -7.50 -37.87 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.30 Total: 2.52 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.16 Total: -9.87 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.09 Total: -39.50 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.75 Total: -12.82 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.59 Total: 16.11 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -2.46 Total: 1.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.37 -7.50 -37.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861697.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.179 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds