Wall clock time and date at job start Mon Mar 30 2020 01:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34896 * 117.00107 * 2 1 4 4 O 1.21625 * 120.00377 * 359.97438 * 3 2 1 5 5 C 1.46400 * 119.99902 * 179.97438 * 3 2 1 6 6 C 1.36750 * 125.46167 * 179.97438 * 5 3 2 7 7 C 1.37411 * 113.28441 * 179.97438 * 6 5 3 8 8 C 1.33856 * 115.11565 * 0.02562 * 7 6 5 9 9 C 1.50700 * 124.52194 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.46758 * 90.00116 * 9 8 7 11 11 C 1.46900 * 110.99659 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47130 * 34.99963 * 11 10 9 13 13 C 1.53002 * 109.47187 * 275.00058 * 11 10 9 14 14 C 1.50700 * 109.47103 * 155.00031 * 11 10 9 15 15 H 1.08003 * 120.00210 * 34.99814 * 14 11 10 16 16 C 1.37879 * 120.00263 * 215.00543 * 14 11 10 17 17 N 1.31516 * 120.00246 * 184.91567 * 16 14 11 18 18 Si 1.86800 * 119.99701 * 4.90814 * 16 14 11 19 19 H 1.48502 * 109.47334 * 84.83582 * 18 16 14 20 20 H 1.48507 * 109.47178 * 204.83303 * 18 16 14 21 21 H 1.48500 * 109.47329 * 324.83281 * 18 16 14 22 22 S 1.70617 * 110.95833 * 0.22883 * 8 7 6 23 23 H 1.08994 * 109.47546 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47501 * 300.00808 * 1 2 3 25 25 H 1.09008 * 109.46856 * 60.00062 * 1 2 3 26 26 H 1.08002 * 123.35577 * 0.02562 * 6 5 3 27 27 H 1.08006 * 122.43934 * 180.02562 * 7 6 5 28 28 H 1.08994 * 109.47351 * 210.00211 * 9 8 7 29 29 H 1.08998 * 109.47087 * 330.00081 * 9 8 7 30 30 H 1.00903 * 110.99831 * 303.95361 * 10 9 8 31 31 H 1.08999 * 109.46923 * 175.05594 * 13 11 10 32 32 H 1.08999 * 109.46838 * 295.05051 * 13 11 10 33 33 H 1.09002 * 109.47072 * 55.05420 * 13 11 10 34 34 H 0.96999 * 120.00156 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2220 -0.0005 5 6 3.5264 1.2785 0.0006 6 6 4.2605 2.4323 0.0001 7 6 5.6170 2.2131 0.0014 8 6 5.9845 0.9260 0.0023 9 6 7.4129 0.4457 0.0032 10 7 7.8763 0.2904 1.3886 11 6 9.2684 -0.1771 1.4286 12 1 9.8221 0.2586 0.5969 13 6 9.2975 -1.7027 1.3172 14 6 9.9024 0.2438 2.7294 15 1 9.3128 0.2700 3.6339 16 6 11.2350 0.5956 2.7648 17 7 11.8126 0.8693 3.9142 18 14 12.2203 0.6832 1.1802 19 1 12.0287 2.0147 0.5511 20 1 13.6604 0.4805 1.4808 21 1 11.7552 -0.3758 0.2489 22 16 4.6200 -0.0983 -0.0048 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 3.8181 3.4176 -0.0003 27 1 6.3343 3.0205 0.0017 28 1 7.4739 -0.5139 -0.5100 29 1 8.0412 1.1731 -0.5107 30 1 7.7692 1.1510 1.9043 31 1 10.3314 -2.0430 1.2585 32 1 8.8203 -2.1402 2.1941 33 1 8.7618 -2.0118 0.4196 34 1 12.7502 1.1165 3.9392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861697.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:37 Heat of formation + Delta-G solvation = -74.792877 kcal Electronic energy + Delta-G solvation = -17506.970628 eV Core-core repulsion = 14530.798889 eV Total energy + Delta-G solvation = -2976.171739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.40968 -39.27547 -37.76238 -37.27831 -34.62138 -32.68750 -30.41438 -28.67207 -27.40157 -26.66464 -24.10910 -23.04934 -21.56586 -20.25798 -19.62587 -18.95684 -17.79730 -17.45863 -17.33283 -16.75629 -15.87058 -15.77959 -15.42625 -14.67219 -14.63461 -14.46460 -14.30667 -13.98455 -13.63253 -13.35985 -13.05141 -12.98524 -12.75216 -12.58874 -12.48850 -12.12059 -11.94930 -11.86954 -11.80087 -11.73000 -11.05280 -10.76300 -9.87893 -9.53804 -9.14058 -8.30775 -6.37160 -0.68816 0.44334 0.94412 1.14672 1.33936 1.36404 1.46588 1.63394 1.87485 2.32580 3.02767 3.53309 3.79806 3.88438 4.14409 4.28685 4.30745 4.32744 4.48701 4.59449 4.66756 4.69450 4.89867 4.97315 4.99559 5.08395 5.12035 5.22265 5.32219 5.51304 5.71359 5.99443 6.49010 6.54810 6.65521 6.80231 7.32183 8.85917 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.040807 B = 0.003722 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.000174 B = 7521.105508 C = 7686.103793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.545 3.455 4 O -0.531 6.531 5 C -0.303 4.303 6 C -0.033 4.033 7 C -0.162 4.162 8 C -0.180 4.180 9 C 0.118 3.882 10 N -0.682 5.682 11 C 0.184 3.816 12 H 0.011 0.989 13 C -0.124 4.124 14 C -0.522 4.522 15 H 0.035 0.965 16 C 0.016 3.984 17 N -0.945 5.945 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.243 1.243 22 S 0.295 5.705 23 H 0.136 0.864 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.162 0.838 27 H 0.158 0.842 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.340 0.660 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.857 -1.863 -13.041 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.391 3.609 4 O -0.423 6.423 5 C -0.422 4.422 6 C -0.068 4.068 7 C -0.192 4.192 8 C -0.301 4.301 9 C -0.012 4.012 10 N -0.314 5.314 11 C 0.075 3.925 12 H 0.029 0.971 13 C -0.182 4.182 14 C -0.561 4.561 15 H 0.054 0.946 16 C -0.183 4.183 17 N -0.585 5.585 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.166 1.166 22 S 0.566 5.434 23 H 0.154 0.846 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.180 0.820 27 H 0.175 0.825 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.383 -3.804 -12.902 22.779 hybrid contribution 1.268 2.770 -0.170 3.051 sum -17.115 -1.034 -13.071 21.560 Atomic orbital electron populations 1.23632 0.73697 1.06082 1.02881 1.86588 1.25790 1.31267 1.84133 1.19764 0.87329 0.81798 0.71999 1.90852 1.66643 1.36707 1.48138 1.23660 0.94047 1.00160 1.24331 1.20846 0.92479 0.98715 0.94755 1.20115 0.95902 0.96818 1.06401 1.24552 1.01691 0.98672 1.05197 1.20574 0.87910 1.01028 0.91727 1.60735 1.23028 1.36582 1.11092 1.19468 0.85264 0.93600 0.94155 0.97143 1.21778 0.99558 0.96717 1.00138 1.21277 0.95327 1.44739 0.94737 0.94629 1.25914 0.98808 0.94109 0.99436 1.70053 1.12765 1.48264 1.27414 0.85829 0.77466 0.79930 0.80247 1.19233 1.21492 1.16606 1.83056 0.90911 1.05195 1.64288 0.84633 0.91744 0.91431 0.82041 0.82461 0.89182 0.92898 0.84237 0.94318 0.93934 0.92827 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.57 113.37 1.20 1.62 16 2 O -0.36 -7.94 10.42 -58.11 -0.61 -8.55 16 3 C 0.55 14.28 7.92 69.95 0.55 14.83 16 4 O -0.53 -15.98 16.64 19.43 0.32 -15.66 16 5 C -0.30 -7.69 6.45 24.05 0.16 -7.53 16 6 C -0.03 -0.80 10.01 21.73 0.22 -0.58 16 7 C -0.16 -3.90 9.99 21.08 0.21 -3.69 16 8 C -0.18 -4.68 5.79 24.69 0.14 -4.53 16 9 C 0.12 3.42 5.91 85.56 0.51 3.93 16 10 N -0.68 -25.52 6.29 -499.46 -3.14 -28.66 16 11 C 0.18 7.98 2.26 44.17 0.10 8.08 16 12 H 0.01 0.46 4.95 -2.39 -0.01 0.45 16 13 C -0.12 -4.90 9.42 71.98 0.68 -4.22 16 14 C -0.52 -28.49 8.84 25.60 0.23 -28.26 16 15 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 16 C 0.02 0.87 5.47 84.65 0.46 1.33 16 17 N -0.95 -57.48 13.96 21.45 0.30 -57.18 16 18 Si 0.94 41.98 26.99 68.60 1.85 43.83 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.24 -9.88 6.82 99.48 0.68 -9.20 16 22 S 0.30 7.01 22.87 -56.49 -1.29 5.72 16 23 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 27 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.09 2.41 7.36 -2.39 -0.02 2.39 16 29 H 0.05 1.49 8.05 -2.39 -0.02 1.47 16 30 H 0.34 13.35 8.34 -89.69 -0.75 12.60 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.76 7.36 -2.39 -0.02 1.74 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -65.79 310.09 2.23 -63.56 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.34 Total: 15.96 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.45 Total: -19.03 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -2.84 Total: -85.84 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.28 Total: -24.20 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.85 Total: 43.83 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -1.29 Total: 5.72 kcal Total: -65.79 2.23 -63.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861697.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.233 kcal (2) G-P(sol) polarization free energy of solvation -65.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds