Wall clock time and date at job start Mon Mar 30 2020 01:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46978 * 24.26771 * 3 2 1 5 5 C 1.34782 * 119.99713 * 175.29315 * 4 3 2 6 6 O 1.21668 * 120.00092 * 4.61035 * 5 4 3 7 7 C 1.46887 * 119.99982 * 184.62304 * 5 4 3 8 8 C 1.36125 * 125.43575 * 185.36786 * 7 5 4 9 9 C 1.41703 * 107.74835 * 179.87670 * 8 7 5 10 10 C 1.40012 * 133.35139 * 180.15023 * 9 8 7 11 11 C 1.36577 * 119.83346 * 180.26765 * 10 9 8 12 12 C 1.38866 * 120.59886 * 0.02562 * 11 10 9 13 13 C 1.37844 * 120.62940 * 359.97302 * 12 11 10 14 14 C 1.39088 * 119.81505 * 0.02598 * 13 12 11 15 15 N 1.37833 * 133.16193 * 180.02562 * 14 13 12 16 16 C 1.36897 * 125.62089 * 359.97438 * 15 14 13 17 17 H 1.08003 * 119.99537 * 128.89871 * 16 15 14 18 18 C 1.39004 * 120.00057 * 308.90798 * 16 15 14 19 19 N 1.31353 * 120.00107 * 4.53114 * 18 16 15 20 20 Si 1.86800 * 119.99900 * 184.53784 * 18 16 15 21 21 H 1.48501 * 109.47301 * 89.99734 * 20 18 16 22 22 H 1.48507 * 109.47071 * 209.99560 * 20 18 16 23 23 H 1.48496 * 109.47487 * 329.99322 * 20 18 16 24 24 H 1.09001 * 109.47264 * 264.26616 * 3 2 1 25 25 H 1.08999 * 109.47213 * 144.26799 * 3 2 1 26 26 H 0.96993 * 120.00338 * 355.00957 * 4 3 2 27 27 H 1.07995 * 126.12833 * 359.97438 * 8 7 5 28 28 H 1.07999 * 120.08883 * 0.24737 * 10 9 8 29 29 H 1.07998 * 119.70654 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.68158 * 180.02562 * 12 11 10 31 31 H 1.07998 * 120.08895 * 180.02562 * 13 12 11 32 32 H 0.97001 * 119.99886 * 185.00317 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2583 -0.5677 5 6 4.4184 -1.4440 -0.7568 6 8 5.2113 -0.6018 -0.3793 7 6 4.9014 -2.6631 -1.4187 8 6 6.2080 -3.0121 -1.5739 9 6 6.2454 -4.2527 -2.2576 10 6 7.2882 -5.0843 -2.6837 11 6 7.0044 -6.2473 -3.3410 12 6 5.6889 -6.6143 -3.5924 13 6 4.6455 -5.8122 -3.1827 14 6 4.9096 -4.6230 -2.5115 15 7 4.1021 -3.6353 -1.9897 16 6 2.7338 -3.6203 -2.0295 17 1 2.1690 -3.4554 -1.1238 18 6 2.0714 -3.8176 -3.2356 19 7 2.7538 -4.1066 -4.3201 20 14 0.2108 -3.6715 -3.3140 21 1 -0.1630 -2.2680 -3.6235 22 1 -0.3119 -4.5686 -4.3758 23 1 -0.3721 -4.0619 -2.0052 24 1 2.9714 0.1035 1.0225 25 1 2.9710 0.8350 -0.6001 26 1 2.4700 -1.9597 -0.8036 27 1 7.0629 -2.4458 -1.2351 28 1 8.3144 -4.8066 -2.4933 29 1 7.8103 -6.8874 -3.6684 30 1 5.4815 -7.5375 -4.1131 31 1 3.6257 -6.1063 -3.3825 32 1 2.3005 -4.1727 -5.1751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609168830.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:34 Heat of formation + Delta-G solvation = 40.476430 kcal Electronic energy + Delta-G solvation = -19707.433210 eV Core-core repulsion = 16633.108723 eV Total energy + Delta-G solvation = -3074.324487 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18782 -40.27245 -37.94245 -37.56953 -35.73876 -35.15730 -32.48128 -30.90586 -30.12549 -28.60723 -26.82422 -24.38464 -22.68286 -21.74277 -21.19932 -20.18994 -18.85181 -17.99602 -17.37099 -16.80517 -16.64622 -16.48781 -16.18177 -15.53788 -15.36989 -14.76751 -14.66180 -14.53374 -14.30067 -14.02163 -13.66886 -13.55138 -13.36593 -13.23279 -13.09567 -12.78179 -12.32485 -12.22566 -11.83496 -11.39998 -11.19748 -11.06390 -10.32970 -10.18798 -8.90960 -8.60479 -8.29434 -6.59936 0.15628 1.13776 1.21947 1.29999 1.34608 1.39994 1.43552 1.59556 2.01513 2.46799 2.51869 2.74342 2.85143 2.92012 3.39772 3.99959 4.26743 4.44443 4.46970 4.51041 4.60312 4.79940 4.90697 5.04982 5.05543 5.22462 5.29352 5.41890 5.49175 5.78085 5.93688 6.01021 6.22165 6.24462 6.31390 6.46265 6.59517 6.88833 7.19824 7.50225 8.36325 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.008312 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.586548 B = 3367.751712 C = 4891.014053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.226 3.774 3 C 0.215 3.785 4 N -0.727 5.727 5 C 0.608 3.392 6 O -0.562 6.562 7 C -0.040 4.040 8 C -0.166 4.166 9 C -0.157 4.157 10 C -0.090 4.090 11 C -0.155 4.155 12 C -0.137 4.137 13 C -0.083 4.083 14 C 0.082 3.918 15 N -0.282 5.282 16 C -0.389 4.389 17 H 0.112 0.888 18 C 0.034 3.966 19 N -0.848 5.848 20 Si 0.974 3.026 21 H -0.271 1.271 22 H -0.269 1.269 23 H -0.255 1.255 24 H 0.143 0.857 25 H 0.134 0.866 26 H 0.414 0.586 27 H 0.149 0.851 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.099 0.901 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 0.634 3.227 3.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.092 4.092 3 C 0.090 3.910 4 N -0.388 5.388 5 C 0.397 3.603 6 O -0.442 6.442 7 C -0.154 4.154 8 C -0.194 4.194 9 C -0.161 4.161 10 C -0.109 4.109 11 C -0.174 4.174 12 C -0.157 4.157 13 C -0.103 4.103 14 C -0.032 4.032 15 N 0.052 4.948 16 C -0.515 4.515 17 H 0.129 0.871 18 C -0.177 4.177 19 N -0.478 5.478 20 Si 0.796 3.204 21 H -0.196 1.196 22 H -0.194 1.194 23 H -0.179 1.179 24 H 0.161 0.839 25 H 0.152 0.848 26 H 0.259 0.741 27 H 0.167 0.833 28 H 0.153 0.847 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.117 0.883 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.235 1.201 3.289 3.509 hybrid contribution -0.978 -0.236 -0.579 1.161 sum -0.743 0.964 2.711 2.971 Atomic orbital electron populations 1.81242 1.14028 1.08017 1.10196 1.29244 0.95138 0.92931 0.91917 1.18972 0.78686 0.88934 1.04405 1.46520 1.07985 1.19208 1.65080 1.16917 0.81844 0.84304 0.77219 1.90728 1.55777 1.44853 1.52793 1.20495 0.91699 0.93230 1.09926 1.20696 0.94663 0.97482 1.06598 1.18457 0.93350 0.97908 1.06429 1.20480 0.97579 0.94102 0.98713 1.20737 0.96457 0.97769 1.02415 1.21012 0.92508 1.00092 1.02102 1.20135 0.98908 0.92805 0.98418 1.18812 0.89895 0.92133 1.02336 1.40063 1.04622 1.11717 1.38388 1.19666 0.79184 1.56626 0.96047 0.87134 1.26355 1.04330 0.92663 0.94396 1.70015 1.39116 1.38524 1.00119 0.85201 0.76716 0.78895 0.79621 1.19640 1.19388 1.17898 0.83939 0.84847 0.74085 0.83284 0.84669 0.83799 0.84883 0.88311 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.33 18.54 20.01 0.37 -13.96 16 2 C 0.23 5.89 15.55 89.44 1.39 7.28 16 3 C 0.22 4.90 6.15 84.58 0.52 5.42 16 4 N -0.73 -23.93 5.42 -475.96 -2.58 -26.51 16 5 C 0.61 24.01 7.77 86.51 0.67 24.68 16 6 O -0.56 -22.72 16.85 -4.25 -0.07 -22.79 16 7 C -0.04 -1.79 6.77 39.91 0.27 -1.52 16 8 C -0.17 -7.28 10.55 22.63 0.24 -7.04 16 9 C -0.16 -6.98 6.16 -21.34 -0.13 -7.11 16 10 C -0.09 -3.34 10.06 22.31 0.22 -3.11 16 11 C -0.16 -5.28 9.97 22.03 0.22 -5.06 16 12 C -0.14 -5.15 10.02 22.33 0.22 -4.92 16 13 C -0.08 -3.76 8.61 22.38 0.19 -3.57 16 14 C 0.08 4.00 6.02 39.06 0.24 4.23 16 15 N -0.28 -13.63 2.79 -331.34 -0.93 -14.56 16 16 C -0.39 -18.05 7.89 84.09 0.66 -17.39 16 17 H 0.11 4.74 6.04 -2.91 -0.02 4.73 16 18 C 0.03 1.56 5.17 84.95 0.44 2.00 16 19 N -0.85 -41.99 10.66 21.67 0.23 -41.76 16 20 Si 0.97 36.84 29.56 68.60 2.03 38.86 16 21 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 23 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 24 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.41 14.69 4.26 -92.71 -0.40 14.29 16 27 H 0.15 5.84 8.06 -2.91 -0.02 5.81 16 28 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 29 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 31 H 0.10 4.74 6.95 -2.91 -0.02 4.72 16 32 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -60.48 289.91 5.00 -55.48 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.78 Total: 31.35 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.16 Total: -6.11 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -2.90 Total: -96.78 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.07 Total: -22.79 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.86 kcal Total: -60.48 5.00 -55.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609168830.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.957 kcal (2) G-P(sol) polarization free energy of solvation -60.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds