Wall clock time and date at job start Mon Mar 30 2020 01:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46991 * 2 1 4 4 N 1.46502 * 109.47439 * 239.99854 * 2 1 3 5 5 S 1.65603 * 120.00001 * 265.00152 * 4 2 1 6 6 O 1.42097 * 106.40469 * 178.53838 * 5 4 2 7 7 O 1.42103 * 106.40306 * 311.45782 * 5 4 2 8 8 C 1.76201 * 107.21888 * 64.99586 * 5 4 2 9 9 C 1.38660 * 119.87828 * 269.72777 * 8 5 4 10 10 C 1.38606 * 120.50159 * 179.71947 * 9 8 5 11 11 C 1.37646 * 120.24738 * 0.55595 * 10 9 8 12 12 C 1.40691 * 119.74275 * 359.72256 * 11 10 9 13 13 C 1.41400 * 120.24357 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00363 * 150.21877 * 13 12 11 15 15 C 1.39950 * 119.99913 * 330.21894 * 13 12 11 16 16 N 1.30817 * 120.00318 * 161.72436 * 15 13 12 17 17 Si 1.86809 * 119.99843 * 341.72764 * 15 13 12 18 18 H 1.48492 * 109.46905 * 95.41056 * 17 15 13 19 19 H 1.48498 * 109.46825 * 215.41523 * 17 15 13 20 20 H 1.48499 * 109.46762 * 335.41023 * 17 15 13 21 21 C 1.37596 * 119.87626 * 90.00009 * 8 5 4 22 22 H 1.08995 * 109.47462 * 300.00082 * 1 2 3 23 23 H 1.09002 * 109.47193 * 60.00724 * 1 2 3 24 24 H 1.09009 * 109.47157 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47073 * 119.99789 * 2 1 3 26 26 H 1.08989 * 109.47338 * 60.00045 * 3 2 1 27 27 H 1.09005 * 109.47138 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47201 * 299.99281 * 3 2 1 29 29 H 0.96992 * 120.00232 * 84.99665 * 4 2 1 30 30 H 1.08002 * 119.74637 * 0.02562 * 9 8 5 31 31 H 1.08004 * 119.87967 * 180.25652 * 10 9 8 32 32 H 1.07996 * 120.12722 * 179.74802 * 11 10 9 33 33 H 0.96996 * 120.00477 * 179.97438 * 16 15 13 34 34 H 1.08007 * 120.12572 * 359.97438 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4122 -2.2974 -1.1217 6 8 2.8125 -2.6736 -2.4322 7 8 3.2437 -2.4543 0.0199 8 6 0.9275 -3.1832 -0.7814 9 6 0.5559 -3.4298 0.5315 10 6 -0.6123 -4.1203 0.8141 11 6 -1.4113 -4.5790 -0.2086 12 6 -1.0411 -4.3395 -1.5446 13 6 -1.8543 -4.8055 -2.6034 14 1 -1.8822 -4.2681 -3.5397 15 6 -2.6229 -5.9633 -2.4380 16 7 -3.6255 -6.2035 -3.2433 17 14 -2.2171 -7.1659 -1.0672 18 1 -3.0645 -6.8716 0.1162 19 1 -2.4788 -8.5520 -1.5313 20 1 -0.7855 -7.0298 -0.6972 21 6 0.1441 -3.6324 -1.8195 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 2.1110 -0.2068 -2.0317 30 1 1.1789 -3.0770 1.3401 31 1 -0.8943 -4.3032 1.8405 32 1 -2.3190 -5.1203 0.0138 33 1 -4.1579 -7.0061 -3.1289 34 1 0.4376 -3.4426 -2.8415 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619472720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:11 Heat of formation + Delta-G solvation = -91.653234 kcal Electronic energy + Delta-G solvation = -18820.965413 eV Core-core repulsion = 15844.062554 eV Total energy + Delta-G solvation = -2976.902859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.70645 -38.38731 -37.61198 -36.93099 -35.64034 -32.55338 -31.88598 -31.44210 -27.96386 -27.22394 -24.08510 -22.72790 -22.30855 -20.76057 -19.75511 -18.55379 -18.05815 -17.25073 -16.95389 -16.63011 -16.06348 -15.57363 -15.16983 -14.85247 -14.68514 -14.29753 -14.11913 -13.79759 -13.48593 -13.37816 -13.21616 -13.09466 -12.97395 -12.88150 -12.56060 -12.46630 -12.26343 -12.07021 -11.81363 -11.75083 -11.54398 -11.06898 -10.48165 -9.97604 -9.67759 -8.97246 -6.59639 -0.52471 0.18966 0.65424 1.20102 1.35384 1.42357 2.02916 2.09849 2.41946 2.76275 3.30337 3.43821 3.94304 4.17621 4.21647 4.30828 4.34601 4.44509 4.54103 4.76338 4.83905 4.87332 4.96270 5.05329 5.06908 5.28967 5.34090 5.43579 5.44511 5.49287 5.63365 5.76380 5.99226 6.16589 6.24332 6.58223 6.69498 8.11089 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028284 B = 0.006105 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.710322 B = 4585.393292 C = 4688.741812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.135 3.865 3 C -0.151 4.151 4 N -1.101 6.101 5 S 2.714 3.286 6 O -0.998 6.998 7 O -0.983 6.983 8 C -0.630 4.630 9 C -0.138 4.138 10 C -0.095 4.095 11 C -0.204 4.204 12 C 0.055 3.945 13 C -0.484 4.484 14 H 0.061 0.939 15 C 0.050 3.950 16 N -0.842 5.842 17 Si 0.956 3.044 18 H -0.248 1.248 19 H -0.275 1.275 20 H -0.256 1.256 21 C -0.120 4.120 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.426 0.574 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.108 0.892 33 H 0.296 0.704 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 11.101 8.920 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.029 3.971 3 C -0.210 4.210 4 N -0.864 5.864 5 S 2.806 3.194 6 O -0.988 6.988 7 O -0.973 6.973 8 C -0.718 4.718 9 C -0.158 4.158 10 C -0.113 4.113 11 C -0.224 4.224 12 C 0.051 3.949 13 C -0.513 4.513 14 H 0.079 0.921 15 C -0.166 4.166 16 N -0.468 5.468 17 Si 0.778 3.222 18 H -0.172 1.172 19 H -0.201 1.201 20 H -0.180 1.180 21 C -0.141 4.141 22 H 0.105 0.895 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.262 0.738 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.078 10.527 8.825 15.453 hybrid contribution -1.126 -0.732 -0.523 1.441 sum 5.952 9.795 8.302 14.153 Atomic orbital electron populations 1.22427 0.95246 1.02664 1.03517 1.21042 0.94186 0.95746 0.86095 1.22046 1.01841 0.93050 1.04024 1.55365 1.83849 1.26924 1.20245 1.00939 0.73446 0.72885 0.72116 1.93514 1.82143 1.82800 1.40380 1.93506 1.64900 1.86109 1.52752 1.30410 1.22492 1.18085 1.00795 1.20569 0.98249 1.03289 0.93716 1.21150 0.94282 0.96921 0.98981 1.21488 1.01286 1.06434 0.93177 1.17931 0.91399 0.92541 0.92997 1.19482 1.21530 1.09991 1.00340 0.92124 1.26781 0.91638 0.99686 0.98465 1.69697 1.13302 1.26618 1.37150 0.85632 0.81080 0.76857 0.78586 1.17238 1.20080 1.18037 1.20849 0.93996 1.02292 0.96963 0.89485 0.91856 0.93473 0.89122 0.89347 0.91716 0.91163 0.73756 0.84007 0.83905 0.87430 0.89346 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 9.52 71.98 0.69 -3.19 16 2 C 0.14 2.79 3.52 44.99 0.16 2.95 16 3 C -0.15 -2.14 9.44 71.98 0.68 -1.47 16 4 N -1.10 -26.99 5.47 -169.38 -0.93 -27.91 16 5 S 2.71 91.87 5.72 -56.49 -0.32 91.55 16 6 O -1.00 -39.96 17.27 -128.00 -2.21 -42.17 16 7 O -0.98 -35.48 16.60 -128.00 -2.12 -37.61 16 8 C -0.63 -24.69 5.05 22.22 0.11 -24.58 16 9 C -0.14 -5.01 8.61 22.46 0.19 -4.81 16 10 C -0.09 -3.55 10.02 22.22 0.22 -3.33 16 11 C -0.20 -9.13 7.18 22.73 0.16 -8.96 16 12 C 0.05 2.73 5.10 -21.29 -0.11 2.62 16 13 C -0.48 -26.72 9.57 23.46 0.22 -26.49 16 14 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 15 C 0.05 2.62 5.40 85.26 0.46 3.08 16 16 N -0.84 -45.20 13.93 21.83 0.30 -44.89 16 17 Si 0.96 41.33 24.52 68.60 1.68 43.01 16 18 H -0.25 -9.78 6.71 99.48 0.67 -9.11 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.26 -11.50 6.86 99.48 0.68 -10.82 16 21 C -0.12 -5.53 9.26 22.73 0.21 -5.32 16 22 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.29 6.18 -2.38 -0.01 1.28 16 25 H 0.09 1.90 7.50 -2.38 -0.02 1.88 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.43 8.54 8.84 -96.75 -0.85 7.68 16 30 H 0.14 4.32 7.59 -2.91 -0.02 4.30 16 31 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.11 4.71 4.73 -2.91 -0.01 4.69 16 33 H 0.30 14.20 8.30 -92.71 -0.77 13.43 16 34 H 0.11 5.15 7.60 -2.91 -0.02 5.13 16 Total: -1.00 -65.99 294.42 -0.40 -66.39 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.20 Total: 21.14 kcal Atomic # 6 Polarization: -72.51 SS G_CDS: 3.00 Total: -69.51 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -0.62 Total: -72.81 kcal Atomic # 8 Polarization: -75.44 SS G_CDS: -4.33 Total: -79.77 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.68 Total: 43.01 kcal Atomic # 16 Polarization: 91.87 SS G_CDS: -0.32 Total: 91.55 kcal Total: -65.99 -0.40 -66.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619472720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.260 kcal (2) G-P(sol) polarization free energy of solvation -65.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds