Wall clock time and date at job start Mon Mar 30 2020 01:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46492 * 109.47065 * 2 1 4 4 C 1.46507 * 119.99958 * 275.64464 * 3 2 1 5 5 S 1.65597 * 120.00384 * 95.64487 * 3 2 1 6 6 O 1.42100 * 106.40188 * 344.44982 * 5 3 2 7 7 O 1.42100 * 106.40486 * 211.52841 * 5 3 2 8 8 C 1.76199 * 107.21845 * 97.99113 * 5 3 2 9 9 C 1.37640 * 120.13265 * 112.70813 * 8 5 3 10 10 C 1.38610 * 120.25344 * 180.32116 * 9 8 5 11 11 C 1.38661 * 120.49521 * 359.67289 * 10 9 8 12 12 C 1.37596 * 120.25360 * 0.02562 * 11 10 9 13 13 C 1.40702 * 120.12685 * 292.40509 * 8 5 3 14 14 C 1.41395 * 120.24306 * 359.97438 * 13 8 5 15 15 H 1.08002 * 120.00107 * 328.36292 * 14 13 8 16 16 C 1.39945 * 120.00099 * 148.36060 * 14 13 8 17 17 N 1.30830 * 119.99672 * 338.98869 * 16 14 13 18 18 Si 1.86795 * 120.00267 * 158.98948 * 16 14 13 19 19 H 1.48496 * 109.47092 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47106 * 300.00239 * 18 16 14 21 21 H 1.48501 * 109.46997 * 60.00529 * 18 16 14 22 22 H 1.08999 * 109.46920 * 60.00376 * 1 2 3 23 23 H 1.08998 * 109.46805 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46986 * 300.00338 * 1 2 3 25 25 H 1.08991 * 109.47072 * 239.99522 * 2 1 3 26 26 H 1.09005 * 109.46717 * 119.99234 * 2 1 3 27 27 H 1.09003 * 109.47042 * 270.00588 * 4 3 2 28 28 H 1.09000 * 109.46927 * 29.99975 * 4 3 2 29 29 H 1.08998 * 109.47142 * 150.00087 * 4 3 2 30 30 H 1.08006 * 119.87534 * 0.02562 * 9 8 5 31 31 H 1.07994 * 119.75514 * 179.69057 * 10 9 8 32 32 H 1.08004 * 119.86909 * 180.02562 * 11 10 9 33 33 H 1.07991 * 120.12923 * 180.02562 * 12 11 10 34 34 H 0.96996 * 120.00454 * 353.99229 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1449 2.1134 -1.2626 5 16 2.4274 2.1149 1.4271 6 8 1.8654 1.3201 2.4624 7 8 2.1392 3.4968 1.2649 8 6 4.1766 1.9880 1.5962 9 6 4.9603 3.1180 1.5373 10 6 6.3372 3.0203 1.6634 11 6 6.9403 1.7868 1.8568 12 6 6.1762 0.6446 1.9250 13 6 4.7773 0.7318 1.7984 14 6 3.9819 -0.4351 1.8675 15 1 2.9808 -0.3833 2.2695 16 6 4.4916 -1.6574 1.4150 17 7 5.4943 -1.6770 0.5748 18 14 3.7406 -3.2606 2.0106 19 1 4.4551 -4.4035 1.3874 20 1 3.8630 -3.3458 3.4880 21 1 2.3062 -3.3071 1.6291 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 3.1405 1.9540 -1.6769 28 1 1.3960 1.7533 -1.9680 29 1 1.9924 3.1775 -1.0824 30 1 4.5010 4.0840 1.3875 31 1 6.9448 3.9116 1.6110 32 1 8.0141 1.7225 1.9541 33 1 6.6480 -0.3150 2.0760 34 1 5.8278 -0.8477 0.1981 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:03 Heat of formation + Delta-G solvation = -65.383492 kcal Electronic energy + Delta-G solvation = -19675.595255 eV Core-core repulsion = 16699.831538 eV Total energy + Delta-G solvation = -2975.763717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -37.87861 -36.47122 -36.04949 -34.91128 -34.08487 -30.31885 -30.17934 -29.49917 -25.75514 -25.32254 -22.10085 -21.82322 -21.21960 -18.47525 -17.87808 -17.03885 -16.17476 -15.55748 -14.95099 -14.47137 -14.19067 -13.75340 -13.66100 -13.42554 -13.24761 -12.66581 -12.34593 -12.16957 -12.02844 -11.71684 -11.53054 -11.32010 -11.21742 -11.17329 -11.03237 -10.77316 -10.59673 -10.50399 -10.26931 -9.81180 -9.37545 -9.21591 -8.44545 -8.22609 -7.82076 -7.45190 -4.87982 1.45575 2.19724 2.61850 3.06181 3.14259 3.27359 3.81521 3.84750 4.31348 4.68528 5.08375 5.23762 5.41221 5.66310 5.68868 5.82420 5.88206 5.92641 6.02969 6.11124 6.12763 6.25939 6.28986 6.58665 6.60865 6.69991 6.87334 7.13893 7.20646 7.27686 7.39992 7.55967 7.65763 7.81256 7.96308 8.37198 8.57212 9.78139 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.012739 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.620558 B = 2197.397453 C = 3463.541489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.113 3.887 3 N -0.996 5.996 4 C 0.091 3.909 5 S 2.706 3.294 6 O -0.970 6.970 7 O -0.997 6.997 8 C -0.780 4.780 9 C 0.010 3.990 10 C -0.260 4.260 11 C -0.057 4.057 12 C -0.208 4.208 13 C 0.173 3.827 14 C -0.532 4.532 15 H 0.119 0.881 16 C 0.043 3.957 17 N -0.782 5.782 18 Si 1.058 2.942 19 H -0.272 1.272 20 H -0.269 1.269 21 H -0.266 1.266 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 0.306 -3.554 5.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 N -0.832 5.832 4 C -0.055 4.055 5 S 2.804 3.196 6 O -0.961 6.961 7 O -0.988 6.988 8 C -0.874 4.874 9 C -0.010 4.010 10 C -0.280 4.280 11 C -0.076 4.076 12 C -0.228 4.228 13 C 0.168 3.832 14 C -0.559 4.559 15 H 0.136 0.864 16 C -0.181 4.181 17 N -0.403 5.403 18 Si 0.880 3.120 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.191 1.191 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.595 -0.961 -3.152 5.654 hybrid contribution 0.911 1.569 -0.227 1.828 sum -3.684 0.607 -3.379 5.035 Atomic orbital electron populations 1.22254 0.97239 1.01798 1.01798 1.21500 0.92958 0.81808 1.04925 1.57305 1.80431 1.23324 1.22160 1.21403 1.01362 0.96561 0.86143 1.00983 0.74679 0.71749 0.72220 1.93462 1.78396 1.70032 1.54199 1.93427 1.85512 1.33460 1.86391 1.29939 1.23264 1.00496 1.33715 1.20340 0.93777 0.95730 0.91161 1.20485 0.94276 0.96513 1.16717 1.20861 0.97742 0.93285 0.95723 1.21369 0.94534 0.97379 1.09494 1.17044 0.92010 0.90376 0.83805 1.21505 1.04669 0.93506 1.36231 0.86384 1.27130 0.93791 1.04146 0.93019 1.70462 1.17571 1.35068 1.17239 0.83741 0.76968 0.73506 0.77825 1.19614 1.19434 1.19129 0.93029 0.91824 0.92420 0.91276 0.87551 0.93213 0.91535 0.90796 0.87254 0.88418 0.88548 0.87178 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.23 37.16 0.38 -2.18 16 2 C 0.11 2.01 5.67 -4.04 -0.02 1.99 16 3 N -1.00 -18.83 3.18 -121.75 -0.39 -19.22 16 4 C 0.09 1.43 10.71 59.85 0.64 2.07 16 5 S 2.71 60.26 5.10 -107.50 -0.55 59.71 16 6 O -0.97 -23.47 14.45 -57.17 -0.83 -24.30 16 7 O -1.00 -22.94 15.75 -57.17 -0.90 -23.84 16 8 C -0.78 -18.67 5.97 -38.87 -0.23 -18.90 16 9 C 0.01 0.22 9.53 -39.66 -0.38 -0.16 16 10 C -0.26 -5.60 10.05 -39.29 -0.39 -6.00 16 11 C -0.06 -1.26 10.02 -39.66 -0.40 -1.65 16 12 C -0.21 -5.03 7.89 -38.87 -0.31 -5.33 16 13 C 0.17 4.33 5.20 -106.82 -0.56 3.77 16 14 C -0.53 -13.02 6.41 -37.74 -0.24 -13.26 16 15 H 0.12 2.92 4.09 -52.49 -0.21 2.71 16 16 C 0.04 1.00 5.01 -17.34 -0.09 0.91 16 17 N -0.78 -18.85 12.47 55.55 0.69 -18.16 16 18 Si 1.06 20.06 29.98 -169.99 -5.10 14.96 16 19 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 21 H -0.27 -4.67 7.11 56.52 0.40 -4.26 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 26 H 0.11 2.12 4.39 -51.93 -0.23 1.89 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.84 8.07 -51.93 -0.42 0.43 16 29 H 0.07 1.14 7.11 -51.93 -0.37 0.77 16 30 H 0.11 2.29 7.32 -52.48 -0.38 1.90 16 31 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 33 H 0.11 2.67 6.79 -52.49 -0.36 2.32 16 34 H 0.30 7.46 6.60 -40.82 -0.27 7.19 16 LS Contribution 290.14 15.07 4.37 4.37 Total: -1.00 -28.32 290.14 -8.28 -36.60 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.00 Total: 8.60 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: -1.60 Total: -38.74 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.30 Total: -37.37 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -1.73 Total: -48.14 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.10 Total: 14.96 kcal Atomic # 16 Polarization: 60.26 SS G_CDS: -0.55 Total: 59.71 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.32 -8.28 -36.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.779 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds