Wall clock time and date at job start Mon Mar 30 2020 01:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47297 * 2 1 4 4 H 1.08993 * 109.46962 * 185.16005 * 3 2 1 5 5 C 1.50694 * 109.46971 * 305.16157 * 3 2 1 6 6 H 1.08003 * 120.00220 * 120.00119 * 5 3 2 7 7 C 1.37882 * 119.99983 * 299.99812 * 5 3 2 8 8 N 1.31508 * 119.99934 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99832 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47461 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47267 * 120.00037 * 9 7 5 12 12 H 1.48500 * 109.47121 * 240.00036 * 9 7 5 13 13 N 1.46895 * 109.46923 * 65.15915 * 3 2 1 14 14 C 1.46901 * 110.99693 * 85.90142 * 13 3 2 15 15 C 1.50707 * 109.47058 * 174.81537 * 14 13 3 16 16 C 1.33860 * 124.52204 * 89.99785 * 15 14 13 17 17 C 1.37414 * 115.11190 * 179.97438 * 16 15 14 18 18 C 1.36753 * 113.28330 * 0.02562 * 17 16 15 19 19 C 1.46392 * 125.45577 * 180.02562 * 18 17 16 20 20 O 1.21626 * 120.00592 * 359.97438 * 19 18 17 21 21 O 1.34908 * 120.00022 * 179.97438 * 19 18 17 22 22 S 1.70615 * 124.51504 * 269.95944 * 15 14 13 23 23 H 1.09000 * 109.47184 * 294.85233 * 1 2 3 24 24 H 1.09000 * 109.47253 * 54.84577 * 1 2 3 25 25 H 1.08998 * 109.47333 * 174.85005 * 1 2 3 26 26 H 1.09001 * 109.47135 * 239.99939 * 2 1 3 27 27 H 1.08998 * 109.47231 * 120.00299 * 2 1 3 28 28 H 0.97006 * 120.00019 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00277 * 321.94927 * 13 3 2 30 30 H 1.09001 * 109.47443 * 54.81326 * 14 13 3 31 31 H 1.09004 * 109.47114 * 294.80826 * 14 13 3 32 32 H 1.08000 * 122.44366 * 359.97438 * 16 15 14 33 33 H 1.07992 * 123.35682 * 179.72971 * 17 16 15 34 34 H 0.96696 * 117.00314 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1615 6 1 0.8269 3.0628 -0.9839 7 6 1.6612 1.7560 -2.4511 8 7 2.4025 0.6915 -2.6674 9 14 0.9131 2.6815 -3.8909 10 1 0.1267 3.8344 -3.3835 11 1 1.9963 3.1734 -4.7798 12 1 0.0210 1.7722 -4.6542 13 7 1.6547 2.0981 1.2568 14 6 2.6433 1.8366 2.3115 15 6 2.2833 2.6254 3.5442 16 6 1.4921 2.1779 4.5269 17 6 1.2930 3.0593 5.5622 18 6 1.9488 4.2475 5.3943 19 6 1.9222 5.3719 6.3314 20 8 1.2771 5.2919 7.3593 21 8 2.6133 6.4970 6.0547 22 16 2.8305 4.2074 3.8736 23 1 -0.3633 0.4319 0.9325 24 1 -0.3634 0.5917 -0.8402 25 1 -0.3634 -1.0235 -0.0922 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5612 0.3871 -3.5747 29 1 0.7321 1.8104 1.5467 30 1 3.6324 2.1358 1.9647 31 1 2.6480 0.7729 2.5494 32 1 1.0431 1.1959 4.5075 33 1 0.6761 2.8376 6.4204 34 1 2.5656 7.2123 6.7036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706248796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:53 Heat of formation + Delta-G solvation = -65.279791 kcal Electronic energy + Delta-G solvation = -17746.515851 eV Core-core repulsion = 14770.756631 eV Total energy + Delta-G solvation = -2975.759220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15579 -38.10143 -36.49816 -36.04664 -33.02903 -31.22908 -29.51841 -27.04422 -25.56533 -23.40941 -23.02509 -22.31724 -19.47940 -19.02910 -18.63486 -17.29266 -16.21095 -15.85793 -15.76261 -15.00677 -14.90628 -14.27947 -13.63757 -13.44071 -13.16984 -12.92673 -12.62205 -12.44653 -12.10709 -11.88036 -11.70661 -11.48529 -10.99526 -10.93025 -10.73216 -10.67666 -10.57111 -10.05348 -9.91865 -9.64569 -9.07991 -8.74133 -8.50640 -8.40407 -7.38691 -6.03295 -4.05020 0.40105 1.51712 2.03163 2.22204 2.90296 2.93524 3.28685 3.37353 3.42354 4.40360 4.84674 5.14196 5.26567 5.28963 5.36976 5.40040 5.75876 5.96727 6.05690 6.14910 6.27789 6.29427 6.30849 6.37310 6.50064 6.81651 7.14580 7.18408 7.44940 7.61403 7.72554 7.81771 8.17731 8.39693 8.50291 9.00765 9.58966 11.03735 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.004113 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.173163 B = 6805.312227 C = 7287.523778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.489 4.489 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.117 3.883 15 C -0.157 4.157 16 C -0.173 4.173 17 C -0.031 4.031 18 C -0.298 4.298 19 C 0.563 3.437 20 O -0.517 6.517 21 O -0.513 6.513 22 S 0.279 5.721 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.024 0.976 26 H 0.094 0.906 27 H 0.011 0.989 28 H 0.259 0.741 29 H 0.332 0.668 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 4.686 14.090 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.014 4.014 15 C -0.278 4.278 16 C -0.203 4.203 17 C -0.066 4.066 18 C -0.417 4.417 19 C 0.408 3.592 20 O -0.408 6.408 21 O -0.325 6.325 22 S 0.549 5.451 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.113 0.887 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.126 5.889 12.942 14.377 hybrid contribution -1.622 -1.231 0.552 2.110 sum 0.504 4.658 13.494 14.284 Atomic orbital electron populations 1.21601 0.97583 0.98794 1.00825 1.22119 0.95129 1.00939 1.00380 1.19274 0.96146 0.88729 0.85075 0.94760 1.21071 1.30638 1.11571 0.89506 0.91863 1.24906 0.95487 0.95144 0.98761 1.69883 1.38972 1.23959 1.20706 0.86506 0.78976 0.79891 0.82448 1.19711 1.21147 1.21222 1.60916 1.03656 1.63396 1.02980 1.20523 0.98057 0.95343 0.87499 1.24768 1.01668 1.00498 1.00911 1.19923 1.03435 1.02487 0.94426 1.20666 0.96558 0.90338 0.99050 1.23422 1.16117 0.98715 1.03428 1.19367 0.75252 0.81025 0.83574 1.90918 1.41424 1.81940 1.26544 1.84623 1.67877 1.26263 1.53750 1.83311 1.43041 1.08883 1.09915 0.95400 0.91156 0.95691 0.88741 0.97052 0.93102 0.84996 0.90142 0.93741 0.83815 0.83280 0.72677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.40 37.16 0.35 -2.31 16 2 C -0.15 -3.23 5.51 -26.73 -0.15 -3.38 16 3 C 0.22 5.00 2.33 -68.87 -0.16 4.84 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.49 -12.70 7.25 -34.44 -0.25 -12.95 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.53 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -24.45 11.38 55.43 0.63 -23.82 16 9 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.68 -13.32 6.19 -109.22 -0.68 -14.00 16 14 C 0.12 1.91 5.94 -4.97 -0.03 1.88 16 15 C -0.16 -2.25 5.84 -35.84 -0.21 -2.46 16 16 C -0.17 -2.24 9.99 -41.42 -0.41 -2.65 16 17 C -0.03 -0.40 10.01 -40.42 -0.40 -0.80 16 18 C -0.30 -3.97 6.45 -36.84 -0.24 -4.21 16 19 C 0.56 7.26 8.30 34.01 0.28 7.55 16 20 O -0.52 -7.78 17.63 -19.36 -0.34 -8.12 16 21 O -0.51 -5.05 13.29 -41.06 -0.55 -5.59 16 22 S 0.28 3.72 22.87 -107.50 -2.46 1.26 16 23 H 0.03 0.50 6.63 -51.93 -0.34 0.16 16 24 H 0.07 1.58 6.85 -51.93 -0.36 1.23 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.38 6.22 -51.93 -0.32 2.05 16 27 H 0.01 0.22 7.50 -51.93 -0.39 -0.17 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 29 H 0.33 6.31 6.69 -39.29 -0.26 6.04 16 30 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 31 H 0.04 0.70 7.54 -51.93 -0.39 0.31 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.41 1.97 9.11 45.56 0.42 2.39 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -29.29 305.08 -8.41 -37.70 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.28 Total: 5.25 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.32 Total: -13.06 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.05 Total: -37.82 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.89 Total: -13.71 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -2.46 Total: 1.26 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.29 -8.41 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706248796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.581 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds