Wall clock time and date at job start Mon Mar 30 2020 00:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29394 * 124.69731 * 2 1 4 4 C 1.30909 * 117.47214 * 179.97438 * 3 2 1 5 5 C 1.50698 * 123.04409 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47223 * 90.03026 * 5 4 3 7 7 C 1.53000 * 109.47076 * 64.99808 * 6 5 4 8 8 C 1.52994 * 109.47533 * 185.00145 * 6 5 4 9 9 C 1.36835 * 113.91697 * 0.02562 * 4 3 2 10 10 C 1.46440 * 126.18099 * 180.02562 * 9 4 3 11 11 O 1.21652 * 120.00245 * 359.97438 * 10 9 4 12 12 O 1.34880 * 120.00021 * 179.97438 * 10 9 4 13 13 C 1.34862 * 117.00225 * 179.97438 * 12 10 9 14 14 H 1.08000 * 119.99806 * 359.97438 * 13 12 10 15 15 C 1.38781 * 119.99911 * 179.97438 * 13 12 10 16 16 N 1.31443 * 120.00265 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00359 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47055 * 90.00046 * 17 15 13 19 19 H 1.48493 * 109.47448 * 210.00082 * 17 15 13 20 20 H 1.48503 * 109.47174 * 330.00292 * 17 15 13 21 21 S 1.70924 * 124.70170 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.46841 * 89.99664 * 1 2 3 23 23 H 1.08994 * 109.46847 * 209.99799 * 1 2 3 24 24 H 1.08998 * 109.46974 * 329.99998 * 1 2 3 25 25 H 1.09006 * 109.47543 * 210.02898 * 5 4 3 26 26 H 1.09003 * 109.47493 * 330.03110 * 5 4 3 27 27 H 1.09007 * 109.46822 * 305.00382 * 6 5 4 28 28 H 1.09004 * 109.47250 * 180.02562 * 7 6 5 29 29 H 1.09003 * 109.47188 * 300.00542 * 7 6 5 30 30 H 1.09004 * 109.47077 * 60.00124 * 7 6 5 31 31 H 1.09006 * 109.47375 * 60.00036 * 8 6 5 32 32 H 1.09004 * 109.47089 * 179.97438 * 8 6 5 33 33 H 1.08994 * 109.47504 * 299.99794 * 8 6 5 34 34 H 0.96993 * 120.00142 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0638 0.0000 4 6 3.5423 0.8992 0.0005 5 6 4.5164 2.0490 0.0000 6 6 4.8462 2.4387 1.4423 7 6 5.5821 1.2851 2.1267 8 6 5.7358 3.6834 1.4437 9 6 3.9353 -0.4115 0.0004 10 6 5.3158 -0.9001 0.0015 11 8 6.2408 -0.1099 0.0020 12 8 5.5619 -2.2262 0.0018 13 6 6.8550 -2.6091 0.0022 14 1 7.6383 -1.8655 0.0018 15 6 7.1792 -3.9585 0.0031 16 7 8.4395 -4.3317 0.0029 17 14 5.8244 -5.2446 0.0044 18 1 5.4650 -5.5864 -1.3954 19 1 6.3004 -6.4642 0.7051 20 1 4.6308 -4.7055 0.7043 21 16 2.4801 -1.4052 0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 5.4304 1.7509 -0.5138 26 1 4.0722 2.9014 -0.5141 27 1 3.9229 2.6514 1.9814 28 1 5.8167 1.5625 3.1545 29 1 4.9483 0.3983 2.1257 30 1 6.5053 1.0723 1.5877 31 1 5.2115 4.5054 0.9562 32 1 5.9704 3.9612 2.4713 33 1 6.6590 3.4708 0.9048 34 1 8.6661 -5.2748 0.0039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756546209.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:04 Heat of formation + Delta-G solvation = -69.276190 kcal Electronic energy + Delta-G solvation = -18699.547163 eV Core-core repulsion = 15723.614646 eV Total energy + Delta-G solvation = -2975.932517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68344 -40.61148 -37.73531 -36.73597 -34.54924 -33.31115 -30.16705 -29.15458 -28.05208 -27.32550 -24.10181 -23.36291 -21.21071 -20.55843 -20.17559 -19.01305 -17.99060 -17.12168 -17.02772 -16.28620 -15.92984 -15.90374 -15.14358 -14.84443 -14.79914 -14.58899 -14.18953 -13.68050 -13.50302 -13.31247 -13.20023 -13.17680 -12.87892 -12.53551 -12.34416 -12.22884 -11.90783 -11.88550 -11.78054 -11.66894 -11.06721 -10.86273 -10.79215 -10.55939 -9.74859 -8.59169 -6.42590 -0.87911 0.12704 0.58130 1.22140 1.28450 1.38180 1.48743 1.95260 2.20166 2.28644 2.89417 2.96333 3.77286 3.81390 4.00598 4.07344 4.21775 4.42994 4.58190 4.67700 4.69375 4.69763 4.80172 4.88209 4.97721 5.01625 5.11495 5.14957 5.30347 5.36785 5.41134 5.58528 5.83554 6.45959 6.52445 6.76716 7.50009 8.53122 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.007749 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.802208 B = 3612.465880 C = 5009.777218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 N -0.490 5.490 4 C 0.156 3.844 5 C -0.052 4.052 6 C -0.073 4.073 7 C -0.146 4.146 8 C -0.137 4.137 9 C -0.301 4.301 10 C 0.487 3.513 11 O -0.530 6.530 12 O -0.255 6.255 13 C -0.399 4.399 14 H 0.066 0.934 15 C 0.020 3.980 16 N -0.910 5.910 17 Si 0.968 3.032 18 H -0.257 1.257 19 H -0.261 1.261 20 H -0.251 1.251 21 S 0.195 5.805 22 H 0.112 0.888 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.022 0.978 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.141 8.487 1.406 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.207 4.207 3 N -0.206 5.206 4 C 0.017 3.983 5 C -0.092 4.092 6 C -0.092 4.092 7 C -0.203 4.203 8 C -0.194 4.194 9 C -0.423 4.423 10 C 0.334 3.666 11 O -0.426 6.426 12 O -0.165 6.165 13 C -0.475 4.475 14 H 0.084 0.916 15 C -0.181 4.181 16 N -0.549 5.549 17 Si 0.787 3.213 18 H -0.182 1.182 19 H -0.185 1.185 20 H -0.175 1.175 21 S 0.453 5.547 22 H 0.130 0.870 23 H 0.126 0.874 24 H 0.123 0.877 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.277 7.869 1.406 19.948 hybrid contribution 1.247 -0.044 -0.071 1.250 sum -17.030 7.825 1.334 18.789 Atomic orbital electron populations 1.20810 0.80867 1.06201 1.06003 1.28342 1.03908 0.90540 0.97947 1.66138 1.03380 1.31889 1.19190 1.21049 0.90611 0.92576 0.94070 1.20577 0.96003 0.93482 0.99137 1.20916 0.99016 0.95672 0.93560 1.22032 1.00717 0.97443 1.00096 1.21758 0.99099 0.96040 1.02545 1.24690 0.95630 0.97961 1.24033 1.19474 0.87928 0.81318 0.77856 1.90638 1.46069 1.56105 1.49806 1.83576 1.30083 1.24173 1.78682 1.20343 0.79293 0.93879 1.53978 0.91622 1.25458 0.99621 0.98651 0.94321 1.69681 1.18484 1.19106 1.47678 0.85294 0.78653 0.77205 0.80113 1.18159 1.18494 1.17464 1.83987 0.94488 1.10597 1.65588 0.87000 0.87448 0.87733 0.90172 0.88367 0.90765 0.92402 0.95929 0.92772 0.90749 0.91459 0.93448 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.46 71.24 0.75 -0.26 16 2 C 0.07 1.64 7.37 88.47 0.65 2.29 16 3 N -0.49 -14.71 10.49 -177.50 -1.86 -16.57 16 4 C 0.16 5.49 5.61 42.37 0.24 5.73 16 5 C -0.05 -1.72 4.82 29.85 0.14 -1.58 16 6 C -0.07 -2.18 2.91 -10.80 -0.03 -2.21 16 7 C -0.15 -5.37 7.63 71.98 0.55 -4.83 16 8 C -0.14 -3.35 9.19 71.98 0.66 -2.69 16 9 C -0.30 -12.09 5.52 24.08 0.13 -11.95 16 10 C 0.49 24.50 6.81 69.96 0.48 24.98 16 11 O -0.53 -28.38 10.27 19.34 0.20 -28.18 16 12 O -0.26 -14.09 8.47 9.75 0.08 -14.00 16 13 C -0.40 -24.66 10.11 67.95 0.69 -23.97 16 14 H 0.07 4.55 7.09 -2.91 -0.02 4.53 16 15 C 0.02 1.18 5.49 84.88 0.47 1.64 16 16 N -0.91 -54.84 13.96 21.63 0.30 -54.54 16 17 Si 0.97 43.67 28.62 68.60 1.96 45.63 16 18 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.25 -10.94 7.11 99.48 0.71 -10.23 16 21 S 0.19 5.95 23.04 -56.49 -1.30 4.65 16 22 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 3.10 6.06 -2.38 -0.01 3.08 16 26 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.02 0.90 5.79 -2.39 -0.01 0.88 16 30 H 0.05 2.35 5.92 -2.38 -0.01 2.34 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.29 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -72.14 298.55 5.22 -66.93 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.11 Total: 8.94 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 4.72 Total: -12.85 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.56 Total: -71.11 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: 0.28 Total: -42.18 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.96 Total: 45.63 kcal Atomic # 16 Polarization: 5.95 SS G_CDS: -1.30 Total: 4.65 kcal Total: -72.14 5.22 -66.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756546209.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.349 kcal (2) G-P(sol) polarization free energy of solvation -72.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds