Wall clock time and date at job start Mon Mar 30 2020 01:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46737 * 216.66142 * 3 2 1 5 5 N 1.46499 * 109.47227 * 336.66077 * 3 2 1 6 6 C 1.34778 * 120.00278 * 274.99953 * 5 3 2 7 7 O 1.21278 * 119.99748 * 0.02562 * 6 5 3 8 8 C 1.50697 * 120.00209 * 180.02562 * 6 5 3 9 9 S 1.80999 * 109.47181 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48496 * 109.47187 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99999 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00046 * 14 12 10 18 18 C 1.52996 * 109.47211 * 96.66700 * 3 2 1 19 19 H 1.09000 * 110.27868 * 65.62887 * 18 3 2 20 20 C 1.54952 * 110.30961 * 187.83369 * 18 3 2 21 21 C 1.55301 * 100.94222 * 155.35978 * 20 18 3 22 22 C 1.54388 * 102.25136 * 325.86157 * 21 20 18 23 23 O 1.43233 * 107.58733 * 21.35932 * 22 21 20 24 24 H 4.18740 * 15.03809 * 359.97438 * 4 2 1 25 25 H 0.97000 * 119.99972 * 95.00309 * 5 3 2 26 26 H 1.08999 * 109.47278 * 59.99800 * 8 6 5 27 27 H 1.09002 * 109.46837 * 300.00183 * 8 6 5 28 28 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 29 29 H 1.09004 * 111.11848 * 273.27641 * 20 18 3 30 30 H 1.08994 * 111.12588 * 37.43176 * 20 18 3 31 31 H 1.09000 * 110.84588 * 207.67445 * 21 20 18 32 32 H 1.08995 * 111.02883 * 84.13206 * 21 20 18 33 33 H 1.09000 * 109.82773 * 261.84758 * 22 21 20 34 34 H 1.08999 * 109.82956 * 140.87244 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8252 0.6136 5 7 3.1349 -1.2673 0.5472 6 6 3.2637 -1.4211 1.8800 7 8 2.9744 -0.5100 2.6263 8 6 3.7672 -2.7252 2.4428 9 16 3.8272 -2.6199 4.2487 10 6 4.4312 -4.2308 4.6292 11 1 4.6418 -4.9304 3.8339 12 6 4.6424 -4.5985 5.9509 13 7 4.3863 -3.7455 6.9203 14 14 5.2901 -6.3036 6.3539 15 1 5.4955 -7.0653 5.0958 16 1 6.5815 -6.1844 7.0773 17 1 4.3077 -7.0169 7.2091 18 6 3.1559 0.1684 -1.4327 19 1 2.8836 1.1509 -1.8180 20 6 4.6926 -0.0245 -1.4827 21 6 4.8874 -0.4576 -2.9613 22 6 3.6030 -1.2687 -3.2371 23 8 2.6208 -0.8638 -2.2764 24 1 -1.0500 -0.0005 -0.0010 25 1 3.3660 -1.9962 -0.0497 26 1 4.7666 -2.9259 2.0567 27 1 3.0954 -3.5315 2.1483 28 1 4.5335 -4.0027 7.8439 29 1 5.2127 0.9107 -1.2754 30 1 5.0124 -0.8098 -0.7978 31 1 5.7726 -1.0845 -3.0685 32 1 4.9468 0.4100 -3.6184 33 1 3.8082 -2.3338 -3.1297 34 1 3.2429 -1.0599 -4.2444 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772890645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:28 Heat of formation + Delta-G solvation = -52.950278 kcal Electronic energy + Delta-G solvation = -17817.708422 eV Core-core repulsion = 14842.483850 eV Total energy + Delta-G solvation = -2975.224573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28328 -40.01085 -36.48715 -34.58566 -33.73355 -33.03928 -31.63013 -30.08449 -27.70087 -26.75056 -22.78172 -22.43485 -21.96378 -19.94919 -19.33014 -18.24371 -17.76560 -17.21389 -16.88210 -16.56270 -16.47427 -15.91343 -15.62975 -14.95762 -14.70452 -14.59074 -14.25570 -13.86917 -13.57932 -13.16241 -12.91392 -12.70597 -12.60967 -12.57551 -12.20578 -11.79069 -11.70518 -11.62544 -11.15882 -11.15767 -10.98005 -10.53484 -10.37603 -10.28206 -8.67155 -8.34902 -6.13023 1.19517 1.40174 1.41778 1.51195 1.57039 1.74328 1.87334 2.26809 2.47229 2.76248 2.99560 3.29529 3.32250 3.55581 3.83724 3.92416 4.00788 4.20785 4.24160 4.27473 4.39767 4.46761 4.50774 4.82553 4.90515 4.97252 5.02736 5.06396 5.25919 5.31619 5.42278 6.02742 6.20084 6.39423 6.66008 7.06649 7.14803 8.74639 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.027508 B = 0.004075 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.626500 B = 6869.998336 C = 7411.948407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.229 4.229 3 C 0.256 3.744 4 H 0.111 0.889 5 N -0.701 5.701 6 C 0.538 3.462 7 O -0.558 6.558 8 C -0.129 4.129 9 S -0.147 6.147 10 C -0.547 4.547 11 H 0.083 0.917 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.275 1.275 18 C 0.087 3.913 19 H 0.102 0.898 20 C -0.154 4.154 21 C -0.145 4.145 22 C 0.040 3.960 23 O -0.395 6.395 24 H 0.246 0.754 25 H 0.416 0.584 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.271 0.729 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 5.196 -23.104 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.231 4.231 3 C 0.151 3.849 4 H 0.128 0.872 5 N -0.355 5.355 6 C 0.324 3.676 7 O -0.435 6.435 8 C -0.280 4.280 9 S 0.080 5.920 10 C -0.694 4.694 11 H 0.101 0.899 12 C -0.190 4.190 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.180 1.180 16 H -0.198 1.198 17 H -0.200 1.200 18 C 0.029 3.971 19 H 0.119 0.881 20 C -0.192 4.192 21 C -0.183 4.183 22 C -0.036 4.036 23 O -0.315 6.315 24 H 0.262 0.738 25 H 0.253 0.747 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.246 6.655 -21.705 22.703 hybrid contribution 0.489 -2.033 -0.396 2.128 sum 0.243 4.622 -22.101 22.581 Atomic orbital electron populations 1.25727 0.96898 0.97781 0.99627 1.23706 0.95485 1.02544 1.01336 1.18050 0.83754 0.87953 0.95115 0.87193 1.45749 1.66940 1.17039 1.05764 1.20133 0.76441 0.88489 0.82495 1.90696 1.50312 1.43273 1.59262 1.23361 1.05647 0.98043 1.00946 1.85574 1.86757 1.21496 0.98180 1.23242 1.50747 0.99578 0.95873 0.89915 1.26121 0.95062 1.02954 0.94896 1.70192 1.46832 1.37328 1.00431 0.84901 0.77856 0.76465 0.78692 1.18048 1.19801 1.20010 1.23238 0.93827 0.93189 0.86821 0.88071 1.23374 0.93465 1.04234 0.98113 1.23104 0.98488 1.01321 0.95370 1.23363 0.88092 0.99531 0.92628 1.88489 1.39555 1.56013 1.47428 0.73801 0.74659 0.86701 0.87655 0.91976 0.88015 0.90224 0.88441 0.89096 0.90651 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.77 19.25 74.32 1.43 -3.34 16 2 C -0.23 -6.69 12.42 31.13 0.39 -6.30 16 3 C 0.26 6.60 2.41 43.19 0.10 6.71 16 4 H 0.11 3.04 7.58 -2.38 -0.02 3.02 16 5 N -0.70 -19.44 4.00 -451.21 -1.81 -21.25 16 6 C 0.54 20.41 7.79 87.66 0.68 21.09 16 7 O -0.56 -26.23 15.52 -3.02 -0.05 -26.28 16 8 C -0.13 -5.18 6.16 71.23 0.44 -4.74 16 9 S -0.15 -8.22 20.57 -56.49 -1.16 -9.38 16 10 C -0.55 -31.29 9.50 67.96 0.65 -30.65 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.82 5.49 84.86 0.47 1.29 16 13 N -0.91 -56.07 13.22 21.65 0.29 -55.78 16 14 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 15 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 C 0.09 1.59 3.22 31.26 0.10 1.69 16 19 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 20 C -0.15 -2.13 6.45 32.05 0.21 -1.93 16 21 C -0.15 -1.43 7.02 31.86 0.22 -1.21 16 22 C 0.04 0.53 7.79 72.45 0.56 1.09 16 23 O -0.39 -7.98 10.30 -148.98 -1.53 -9.51 16 24 H 0.25 4.35 7.80 -4.42 -0.03 4.31 16 25 H 0.42 9.39 7.92 -92.71 -0.73 8.66 16 26 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 27 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.08 1.27 6.77 -2.39 -0.02 1.25 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -77.72 313.32 3.38 -74.33 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.37 Total: 18.55 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 5.25 Total: -16.30 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -1.52 Total: -77.03 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.58 Total: -35.79 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -77.72 3.38 -74.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772890645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.383 kcal (2) G-P(sol) polarization free energy of solvation -77.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds