Wall clock time and date at job start Mon Mar 30 2020 01:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46736 * 2 1 4 4 O 1.42897 * 109.47113 * 119.99908 * 2 1 3 5 5 C 1.50702 * 109.47095 * 240.00574 * 2 1 3 6 6 O 1.21293 * 119.99582 * 244.99466 * 5 2 1 7 7 N 1.34770 * 120.00119 * 64.99706 * 5 2 1 8 8 C 1.40090 * 119.99772 * 175.91857 * 7 5 2 9 9 C 1.38707 * 120.07721 * 34.57480 * 8 7 5 10 10 C 1.38192 * 120.01862 * 179.69935 * 9 8 7 11 11 C 1.38552 * 120.17710 * 0.59740 * 10 9 8 12 12 F 1.35101 * 119.92205 * 179.69937 * 11 10 9 13 13 C 1.38338 * 120.15289 * 359.67864 * 11 10 9 14 14 C 1.38739 * 119.97926 * 0.02562 * 13 11 10 15 15 O 1.35775 * 120.08915 * 179.97438 * 14 13 11 16 16 C 1.34810 * 116.99833 * 5.43317 * 15 14 13 17 17 H 1.08003 * 119.99758 * 354.95711 * 16 15 14 18 18 C 1.38634 * 119.99632 * 174.95213 * 16 15 14 19 19 N 1.31572 * 120.00409 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47575 * 90.00125 * 20 18 16 22 22 H 1.48505 * 109.47058 * 209.99845 * 20 18 16 23 23 H 1.48503 * 109.47486 * 329.99866 * 20 18 16 24 24 H 1.09004 * 109.46647 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47124 * 299.99285 * 1 2 3 26 26 H 1.08999 * 109.47079 * 60.00279 * 1 2 3 27 27 H 0.96705 * 113.99676 * 60.00609 * 4 2 1 28 28 H 0.96994 * 120.00276 * 355.64448 * 7 5 2 29 29 H 1.08001 * 119.99057 * 359.97220 * 9 8 7 30 30 H 1.08000 * 119.90885 * 180.29758 * 10 9 8 31 31 H 1.08000 * 120.01003 * 180.02562 * 13 11 10 32 32 H 0.97001 * 119.99876 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0324 -0.7103 -1.2305 6 8 2.6532 -1.7466 -1.1216 7 7 1.7919 -0.1940 -2.4520 8 6 2.3312 -0.8073 -3.5902 9 6 2.4652 -2.1871 -3.6388 10 6 2.9915 -2.7913 -4.7647 11 6 3.3983 -2.0216 -5.8425 12 9 3.9178 -2.6172 -6.9382 13 6 3.2732 -0.6445 -5.7995 14 6 2.7400 -0.0316 -4.6748 15 8 2.6167 1.3198 -4.6300 16 6 2.9253 2.0000 -5.7523 17 1 3.3305 1.4775 -6.6062 18 6 2.7225 3.3702 -5.8101 19 7 2.2283 4.0067 -4.7700 20 14 3.1494 4.3127 -7.3654 21 1 1.9663 4.3501 -8.2622 22 1 3.5458 5.6992 -7.0109 23 1 4.2756 3.6381 -8.0597 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7211 -1.5952 1.2328 28 1 1.2422 0.5999 -2.5433 29 1 2.1539 -2.7896 -2.7983 30 1 3.0906 -3.8661 -4.8025 31 1 3.5906 -0.0467 -6.6411 32 1 2.0867 4.9654 -4.8105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787120678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:02 Heat of formation + Delta-G solvation = -155.756295 kcal Electronic energy + Delta-G solvation = -20310.084256 eV Core-core repulsion = 16764.188504 eV Total energy + Delta-G solvation = -3545.895752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.86493 -41.78531 -40.44200 -38.31505 -37.39906 -35.69519 -34.32987 -32.19513 -31.09709 -29.72614 -27.43279 -25.62270 -24.04746 -23.17334 -21.52218 -20.17557 -19.73967 -18.97221 -18.31160 -17.25650 -17.09186 -16.94406 -16.59596 -16.33062 -15.97010 -15.67163 -15.38528 -15.26963 -15.14092 -14.92309 -14.08258 -13.79697 -13.51504 -13.38749 -13.12527 -13.03208 -12.75662 -12.59331 -12.33351 -12.15791 -11.76417 -11.66694 -11.19352 -10.84235 -10.58798 -9.60477 -8.83257 -8.52643 -6.19131 0.12815 0.42538 1.37399 1.43434 1.44871 1.52202 2.01860 2.14290 2.62624 3.03057 3.13415 3.27003 3.41614 3.60155 3.91792 3.96858 4.11554 4.14041 4.32901 4.58196 4.76183 4.84459 4.89763 5.00345 5.18343 5.19334 5.27050 5.32028 5.48700 5.91279 5.98665 6.35126 6.63485 6.91710 7.03156 7.58921 8.67492 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.006920 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.558208 B = 4045.009052 C = 5823.396542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.132 0.868 4 O -0.551 6.551 5 C 0.480 3.520 6 O -0.559 6.559 7 N -0.645 5.645 8 C 0.053 3.947 9 C -0.050 4.050 10 C -0.207 4.207 11 C 0.125 3.875 12 F -0.144 7.144 13 C -0.267 4.267 14 C 0.133 3.867 15 O -0.200 6.200 16 C -0.419 4.419 17 H 0.099 0.901 18 C -0.007 4.007 19 N -0.902 5.902 20 Si 1.011 2.989 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.260 1.260 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.393 0.607 28 H 0.419 0.581 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.136 0.864 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 -6.852 4.598 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.037 3.963 3 H 0.149 0.851 4 O -0.357 6.357 5 C 0.269 3.731 6 O -0.437 6.437 7 N -0.291 5.291 8 C -0.042 4.042 9 C -0.070 4.070 10 C -0.226 4.226 11 C 0.105 3.895 12 F -0.123 7.123 13 C -0.287 4.287 14 C 0.079 3.921 15 O -0.105 6.105 16 C -0.494 4.494 17 H 0.116 0.884 18 C -0.207 4.207 19 N -0.538 5.538 20 Si 0.831 3.169 21 H -0.187 1.187 22 H -0.195 1.195 23 H -0.184 1.184 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.097 0.903 27 H 0.243 0.757 28 H 0.256 0.744 29 H 0.172 0.828 30 H 0.176 0.824 31 H 0.154 0.846 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.982 -6.622 5.073 9.244 hybrid contribution 0.010 0.378 -1.289 1.343 sum -3.973 -6.244 3.784 8.312 Atomic orbital electron populations 1.22424 0.91294 1.04330 1.05066 1.21866 0.96384 0.96898 0.81163 0.85062 1.86576 1.78131 1.30763 1.40273 1.22440 0.79143 0.85789 0.85710 1.90635 1.41608 1.24770 1.86730 1.43287 1.50528 1.31234 1.04031 1.17199 1.07514 0.91493 0.87956 1.20857 0.97149 0.91232 0.97740 1.20899 1.07769 1.01155 0.92823 1.17477 0.97775 0.90081 0.84124 1.91432 1.84519 1.83926 1.52399 1.20951 1.12278 0.94005 1.01495 1.19199 0.94382 0.84768 0.93715 1.83905 1.76644 1.12500 1.37415 1.21751 1.44625 0.91015 0.92058 0.88379 1.26362 0.95811 0.96176 1.02326 1.70105 1.42252 1.10275 1.31206 0.84682 0.79234 0.77275 0.75718 1.18749 1.19507 1.18354 0.90827 0.88690 0.90337 0.75651 0.74392 0.82828 0.82387 0.84609 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.48 71.98 0.68 -2.29 16 2 C 0.10 2.38 4.00 29.85 0.12 2.49 16 3 H 0.13 3.09 8.14 -2.38 -0.02 3.07 16 4 O -0.55 -13.56 12.99 -129.99 -1.69 -15.25 16 5 C 0.48 15.28 7.01 87.66 0.61 15.90 16 6 O -0.56 -20.57 13.75 15.92 0.22 -20.35 16 7 N -0.64 -22.56 5.15 -303.04 -1.56 -24.12 16 8 C 0.05 2.15 6.33 38.23 0.24 2.39 16 9 C -0.05 -1.78 8.69 22.37 0.19 -1.59 16 10 C -0.21 -7.02 10.02 22.33 0.22 -6.80 16 11 C 0.13 4.77 7.29 22.37 0.16 4.93 16 12 F -0.14 -5.19 17.26 44.97 0.78 -4.41 16 13 C -0.27 -11.56 9.14 22.41 0.20 -11.36 16 14 C 0.13 6.15 6.66 22.69 0.15 6.30 16 15 O -0.20 -10.60 9.32 -22.81 -0.21 -10.82 16 16 C -0.42 -22.40 9.49 67.91 0.64 -21.76 16 17 H 0.10 4.95 5.20 -2.91 -0.02 4.93 16 18 C -0.01 -0.34 5.49 84.83 0.47 0.12 16 19 N -0.90 -49.62 13.67 21.61 0.30 -49.33 16 20 Si 1.01 40.03 29.55 68.60 2.03 42.06 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 24 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.34 7.79 -2.39 -0.02 1.32 16 27 H 0.39 7.39 8.79 -74.05 -0.65 6.74 16 28 H 0.42 14.01 8.22 -92.71 -0.76 13.25 16 29 H 0.15 5.16 6.20 -2.91 -0.02 5.14 16 30 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.14 5.99 5.64 -2.91 -0.02 5.97 16 32 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -64.88 289.26 3.35 -61.53 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.21 Total: 32.34 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 3.71 Total: -11.65 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.26 Total: -73.45 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.68 Total: -46.41 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.78 Total: -4.41 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -64.88 3.35 -61.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787120678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.223 kcal (2) G-P(sol) polarization free energy of solvation -64.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds