Wall clock time and date at job start Mon Mar 30 2020 00:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29493 * 121.53005 * 2 1 4 4 S 1.69483 * 107.86184 * 180.21812 * 3 2 1 5 5 C 1.72015 * 96.03949 * 359.74529 * 4 3 2 6 6 C 1.50700 * 127.31955 * 179.97438 * 5 4 3 7 7 C 1.37982 * 105.35876 * 359.97438 * 5 4 3 8 8 C 1.47192 * 123.09942 * 179.97438 * 7 5 4 9 9 O 1.21543 * 119.99814 * 90.00451 * 8 7 5 10 10 O 1.34763 * 120.00358 * 269.72600 * 8 7 5 11 11 C 1.45196 * 117.00315 * 180.27163 * 10 8 7 12 12 C 1.53001 * 109.47485 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47468 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47474 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00090 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00242 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99822 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46943 * 90.00038 * 18 16 14 20 20 H 1.48500 * 109.47199 * 209.99690 * 18 16 14 21 21 H 1.48495 * 109.47276 * 330.00106 * 18 16 14 22 22 H 1.09001 * 109.46938 * 270.25223 * 1 2 3 23 23 H 1.09001 * 109.47273 * 30.24934 * 1 2 3 24 24 H 1.08996 * 109.47535 * 150.25399 * 1 2 3 25 25 H 1.08994 * 109.46924 * 270.04281 * 6 5 4 26 26 H 1.08999 * 109.46946 * 30.04256 * 6 5 4 27 27 H 1.08991 * 109.46656 * 150.04023 * 6 5 4 28 28 H 1.08998 * 109.47461 * 300.00597 * 11 10 8 29 29 H 1.09010 * 109.46796 * 60.00387 * 11 10 8 30 30 H 1.08998 * 109.47123 * 300.00638 * 12 11 10 31 31 H 1.08996 * 109.46839 * 60.00406 * 12 11 10 32 32 H 1.08998 * 109.47304 * 300.00325 * 13 12 11 33 33 H 1.09010 * 109.46970 * 60.00125 * 13 12 11 34 34 H 0.97004 * 119.99967 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1842 1.1038 0.0000 4 16 3.8310 0.7033 -0.0061 5 6 3.6027 -1.0016 -0.0012 6 6 4.6692 -2.0663 -0.0038 7 6 2.2354 -1.1872 0.0057 8 6 1.6048 -2.5172 0.0112 9 8 1.3494 -3.0643 1.0660 10 8 1.3054 -3.1259 -1.1533 11 6 0.6793 -4.4334 -1.0719 12 6 0.4173 -4.9622 -2.4835 13 6 -0.2430 -6.3397 -2.3977 14 6 -0.5005 -6.8609 -3.7880 15 1 -0.2208 -6.2690 -4.6470 16 6 -1.0932 -8.0933 -3.9635 17 7 -1.4334 -8.8143 -2.9175 18 14 -1.4118 -8.7396 -5.6870 19 1 -0.2340 -9.5170 -6.1496 20 1 -2.6096 -9.6172 -5.6730 21 1 -1.6447 -7.5986 -6.6083 22 1 -0.3633 0.0045 1.0277 23 1 -0.3634 0.8877 -0.5177 24 1 -0.3634 -0.8922 -0.5098 25 1 4.9220 -2.3247 -1.0321 26 1 5.5573 -1.6922 0.5056 27 1 4.2998 -2.9518 0.5131 28 1 1.3403 -5.1205 -0.5437 29 1 -0.2648 -4.3512 -0.5332 30 1 -0.2435 -4.2752 -3.0120 31 1 1.3615 -5.0445 -3.0217 32 1 0.4175 -7.0270 -1.8690 33 1 -1.1874 -6.2571 -1.8595 34 1 -1.8501 -9.6816 -3.0410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795934736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:10 Heat of formation + Delta-G solvation = -70.769573 kcal Electronic energy + Delta-G solvation = -17638.455579 eV Core-core repulsion = 14662.458303 eV Total energy + Delta-G solvation = -2975.997275 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.67747 -38.88428 -36.43430 -34.03897 -33.64126 -31.74372 -30.06633 -28.66830 -27.07987 -24.20244 -22.84650 -21.63056 -20.43483 -19.37448 -18.53884 -17.39874 -16.61321 -16.14606 -15.94463 -15.13698 -14.55877 -14.49120 -14.13019 -13.71765 -13.48621 -13.36182 -12.89832 -12.53398 -12.44801 -12.23136 -12.16426 -11.96545 -11.49997 -11.07983 -10.99900 -10.70936 -10.69231 -10.46304 -10.44520 -9.77627 -9.71338 -9.54813 -9.19882 -8.96707 -8.41348 -6.06135 -4.09320 0.21088 0.97673 1.39258 1.80753 2.09218 2.91599 3.29362 3.35803 3.39279 3.98440 4.41146 4.53159 4.74771 4.85359 5.02029 5.10952 5.18731 5.29920 5.30000 5.37139 5.50518 5.53466 5.57890 5.78818 5.94090 6.23442 6.38126 6.48515 6.73846 6.92990 7.56741 7.67281 7.74809 7.91929 8.32786 8.96880 9.55243 11.05249 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.034524 B = 0.003304 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.835019 B = 8473.182383 C = 8577.167844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.161 3.839 3 N -0.467 5.467 4 S 0.289 5.711 5 C -0.126 4.126 6 C -0.091 4.091 7 C -0.195 4.195 8 C 0.536 3.464 9 O -0.493 6.493 10 O -0.347 6.347 11 C 0.066 3.934 12 C -0.109 4.109 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.526 17.684 6.512 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 N -0.287 5.287 4 S 0.445 5.555 5 C -0.257 4.257 6 C -0.149 4.149 7 C -0.214 4.214 8 C 0.376 3.624 9 O -0.381 6.381 10 O -0.263 6.263 11 C -0.007 4.007 12 C -0.146 4.146 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.221 19.403 6.854 23.438 hybrid contribution -1.095 -2.220 -0.760 2.590 sum 10.125 17.183 6.094 20.855 Atomic orbital electron populations 1.20716 0.85733 1.04748 1.04316 1.21223 0.99133 0.86555 0.94721 1.76385 1.00212 1.25621 1.26522 1.83964 1.10436 0.94389 1.66689 1.26132 0.96954 1.03181 0.99391 1.20492 0.94745 0.95196 1.04501 1.19452 0.92379 0.93407 1.16128 1.20107 0.75306 0.84306 0.82710 1.90885 1.49330 1.65206 1.32661 1.86675 1.71686 1.35122 1.32806 1.23620 0.96944 0.78525 1.01632 1.21780 1.01511 0.99773 0.91582 1.19056 0.95680 0.88765 0.97796 1.21163 1.39930 1.02706 0.92247 0.92420 1.25024 0.95548 0.96868 0.96984 1.69962 1.41804 1.12335 1.29226 0.86548 0.77789 0.78884 0.84523 1.20607 1.21176 1.19791 0.89153 0.89282 0.89704 0.88537 0.89560 0.89611 0.91283 0.91189 0.92034 0.92092 0.96209 0.96161 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.96 36.01 0.36 -0.61 16 2 C 0.16 2.02 6.75 -83.19 -0.56 1.46 16 3 N -0.47 -5.76 11.97 32.51 0.39 -5.37 16 4 S 0.29 2.84 23.69 -107.50 -2.55 0.30 16 5 C -0.13 -1.38 6.67 -34.40 -0.23 -1.61 16 6 C -0.09 -0.75 10.19 36.01 0.37 -0.38 16 7 C -0.20 -2.60 5.74 -105.96 -0.61 -3.20 16 8 C 0.54 8.36 5.91 34.37 0.20 8.56 16 9 O -0.49 -8.79 16.90 -19.30 -0.33 -9.12 16 10 O -0.35 -5.73 10.23 -40.66 -0.42 -6.14 16 11 C 0.07 1.17 5.48 37.16 0.20 1.37 16 12 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 13 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 14 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 18 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.91 7.39 -51.93 -0.38 0.53 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.80 7.85 -51.93 -0.41 0.40 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -31.60 315.41 -7.95 -39.55 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -4.56 Total: -4.93 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.96 Total: -9.58 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 1.13 Total: -31.11 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.74 Total: -15.26 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.55 Total: 0.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.60 -7.95 -39.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795934736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.217 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds