Wall clock time and date at job start Mon Mar 30 2020 00:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29493 * 121.53005 * 2 1 4 4 S 1.69483 * 107.86184 * 180.21812 * 3 2 1 5 5 C 1.72015 * 96.03949 * 359.74529 * 4 3 2 6 6 C 1.50700 * 127.31955 * 179.97438 * 5 4 3 7 7 C 1.37982 * 105.35876 * 359.97438 * 5 4 3 8 8 C 1.47192 * 123.09942 * 179.97438 * 7 5 4 9 9 O 1.21543 * 119.99814 * 90.00451 * 8 7 5 10 10 O 1.34763 * 120.00358 * 269.72600 * 8 7 5 11 11 C 1.45196 * 117.00315 * 180.27163 * 10 8 7 12 12 C 1.53001 * 109.47485 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47468 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47474 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00090 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00242 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99822 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46943 * 90.00038 * 18 16 14 20 20 H 1.48500 * 109.47199 * 209.99690 * 18 16 14 21 21 H 1.48495 * 109.47276 * 330.00106 * 18 16 14 22 22 H 1.09001 * 109.46938 * 270.25223 * 1 2 3 23 23 H 1.09001 * 109.47273 * 30.24934 * 1 2 3 24 24 H 1.08996 * 109.47535 * 150.25399 * 1 2 3 25 25 H 1.08994 * 109.46924 * 270.04281 * 6 5 4 26 26 H 1.08999 * 109.46946 * 30.04256 * 6 5 4 27 27 H 1.08991 * 109.46656 * 150.04023 * 6 5 4 28 28 H 1.08998 * 109.47461 * 300.00597 * 11 10 8 29 29 H 1.09010 * 109.46796 * 60.00387 * 11 10 8 30 30 H 1.08998 * 109.47123 * 300.00638 * 12 11 10 31 31 H 1.08996 * 109.46839 * 60.00406 * 12 11 10 32 32 H 1.08998 * 109.47304 * 300.00325 * 13 12 11 33 33 H 1.09010 * 109.46970 * 60.00125 * 13 12 11 34 34 H 0.97004 * 119.99967 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1842 1.1038 0.0000 4 16 3.8310 0.7033 -0.0061 5 6 3.6027 -1.0016 -0.0012 6 6 4.6692 -2.0663 -0.0038 7 6 2.2354 -1.1872 0.0057 8 6 1.6048 -2.5172 0.0112 9 8 1.3494 -3.0643 1.0660 10 8 1.3054 -3.1259 -1.1533 11 6 0.6793 -4.4334 -1.0719 12 6 0.4173 -4.9622 -2.4835 13 6 -0.2430 -6.3397 -2.3977 14 6 -0.5005 -6.8609 -3.7880 15 1 -0.2208 -6.2690 -4.6470 16 6 -1.0932 -8.0933 -3.9635 17 7 -1.4334 -8.8143 -2.9175 18 14 -1.4118 -8.7396 -5.6870 19 1 -0.2340 -9.5170 -6.1496 20 1 -2.6096 -9.6172 -5.6730 21 1 -1.6447 -7.5986 -6.6083 22 1 -0.3633 0.0045 1.0277 23 1 -0.3634 0.8877 -0.5177 24 1 -0.3634 -0.8922 -0.5098 25 1 4.9220 -2.3247 -1.0321 26 1 5.5573 -1.6922 0.5056 27 1 4.2998 -2.9518 0.5131 28 1 1.3403 -5.1205 -0.5437 29 1 -0.2648 -4.3512 -0.5332 30 1 -0.2435 -4.2752 -3.0120 31 1 1.3615 -5.0445 -3.0217 32 1 0.4175 -7.0270 -1.8690 33 1 -1.1874 -6.2571 -1.8595 34 1 -1.8501 -9.6816 -3.0410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795934736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:09 Heat of formation + Delta-G solvation = -88.487904 kcal Electronic energy + Delta-G solvation = -17639.223903 eV Core-core repulsion = 14662.458303 eV Total energy + Delta-G solvation = -2976.765600 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85948 -39.91705 -37.80662 -35.93534 -34.49339 -33.66125 -30.96349 -29.63071 -28.77394 -25.70480 -24.25783 -22.64220 -22.17404 -20.50814 -19.43607 -18.79423 -18.32850 -17.58750 -17.24562 -16.49699 -16.01290 -15.60249 -15.43731 -14.74397 -14.46273 -14.39488 -14.12596 -13.80923 -13.77415 -13.64381 -13.31953 -13.20349 -12.83206 -12.54351 -12.50968 -12.33785 -12.11129 -12.04818 -11.70983 -11.43777 -11.42008 -11.22971 -10.58117 -10.56223 -9.80042 -8.20998 -6.32245 -0.66370 0.12278 0.50044 0.84049 0.91630 1.42621 1.43657 1.54826 1.69960 2.42214 3.13175 3.17167 3.56143 3.71942 3.98303 4.02734 4.04298 4.17258 4.35749 4.40520 4.50589 4.53029 4.62564 4.79597 4.82162 4.95532 5.00663 5.06712 5.25688 5.40935 5.49933 5.64877 5.81177 6.19827 6.47752 6.83636 7.37343 8.91067 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.034524 B = 0.003304 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.835019 B = 8473.182383 C = 8577.167844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.155 3.845 3 N -0.494 5.494 4 S 0.348 5.652 5 C -0.121 4.121 6 C -0.095 4.095 7 C -0.230 4.230 8 C 0.546 3.454 9 O -0.520 6.520 10 O -0.346 6.346 11 C 0.075 3.925 12 C -0.094 4.094 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.262 1.262 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.067 0.933 32 H -0.001 1.001 33 H -0.002 1.002 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.811 18.881 5.509 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.021 4.021 3 N -0.315 5.315 4 S 0.505 5.495 5 C -0.251 4.251 6 C -0.154 4.154 7 C -0.249 4.249 8 C 0.387 3.613 9 O -0.409 6.409 10 O -0.262 6.262 11 C 0.002 3.998 12 C -0.131 4.131 13 C -0.011 4.011 14 C -0.581 4.581 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.186 1.186 22 H 0.116 0.884 23 H 0.121 0.879 24 H 0.094 0.906 25 H 0.128 0.872 26 H 0.135 0.865 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.512 20.624 5.847 24.821 hybrid contribution -1.385 -2.520 -0.400 2.903 sum 11.127 18.104 5.447 21.937 Atomic orbital electron populations 1.20778 0.84990 1.04973 1.04919 1.21349 0.99914 0.86262 0.94606 1.76259 1.01949 1.25915 1.27412 1.83751 1.08384 0.92542 1.64866 1.26597 0.96641 1.04832 0.97058 1.20688 0.94991 0.94095 1.05580 1.19438 0.93488 0.92229 1.19739 1.20434 0.74341 0.84725 0.81775 1.90866 1.50521 1.66139 1.33384 1.86656 1.71664 1.34308 1.33623 1.23284 0.97155 0.79427 0.99965 1.21467 1.01351 0.97138 0.93187 1.18935 0.94617 0.91180 0.96383 1.21620 1.39851 1.03179 0.93450 0.91744 1.25976 0.95225 0.97204 1.01368 1.70093 1.42670 1.12827 1.31693 0.85418 0.77780 0.78418 0.79266 1.19734 1.20874 1.18617 0.88378 0.87874 0.90581 0.87154 0.86513 0.90899 0.91311 0.91311 0.91496 0.91412 0.98290 0.98311 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.96 71.24 0.71 -1.22 16 2 C 0.16 3.75 6.75 43.16 0.29 4.04 16 3 N -0.49 -11.44 11.97 -51.05 -0.61 -12.05 16 4 S 0.35 6.01 23.69 -56.49 -1.34 4.67 16 5 C -0.12 -2.41 6.67 25.63 0.17 -2.24 16 6 C -0.10 -1.36 10.19 71.24 0.73 -0.63 16 7 C -0.23 -5.93 5.74 -20.73 -0.12 -6.05 16 8 C 0.55 16.92 5.91 70.17 0.41 17.34 16 9 O -0.52 -18.69 16.90 19.70 0.33 -18.36 16 10 O -0.35 -11.31 10.23 -56.74 -0.58 -11.89 16 11 C 0.08 2.68 5.48 71.98 0.39 3.07 16 12 C -0.09 -3.77 5.53 30.59 0.17 -3.61 16 13 C 0.03 1.34 4.97 29.85 0.15 1.49 16 14 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 15 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 18 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 22 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.08 1.64 7.39 -2.39 -0.02 1.63 16 25 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.27 7.85 -2.39 -0.02 1.26 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.07 2.46 8.14 -2.38 -0.02 2.45 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -67.46 315.41 4.81 -62.65 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 1.10 Total: 2.60 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 3.60 Total: -17.34 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -0.33 Total: -67.79 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.25 Total: -30.25 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -1.34 Total: 4.67 kcal Total: -67.46 4.81 -62.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795934736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.841 kcal (2) G-P(sol) polarization free energy of solvation -67.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds