Wall clock time and date at job start Mon Mar 30 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47029 * 2 1 4 4 N 1.46501 * 109.47151 * 119.99999 * 2 1 3 5 5 C 1.46498 * 120.00049 * 294.96232 * 4 2 1 6 6 C 1.50702 * 109.47043 * 262.10264 * 5 4 2 7 7 H 1.08001 * 119.99553 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99942 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99712 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99914 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.46959 * 89.99939 * 10 8 6 12 12 H 1.48501 * 109.47147 * 209.99909 * 10 8 6 13 13 H 1.48501 * 109.47057 * 329.99891 * 10 8 6 14 14 C 1.34772 * 119.99519 * 114.95970 * 4 2 1 15 15 O 1.21709 * 120.00680 * 1.85678 * 14 4 2 16 16 C 1.46548 * 119.99994 * 181.85654 * 14 4 2 17 17 C 1.36743 * 125.43106 * 172.12392 * 16 14 4 18 18 C 1.37730 * 113.25721 * 179.97438 * 17 16 14 19 19 O 1.36208 * 122.49775 * 180.02562 * 18 17 16 20 20 C 1.34079 * 114.99961 * 0.02562 * 18 17 16 21 21 S 1.70600 * 110.97531 * 0.26634 * 20 18 17 22 22 H 1.08997 * 109.47242 * 299.99878 * 1 2 3 23 23 H 1.09004 * 109.47133 * 59.99542 * 1 2 3 24 24 H 1.08995 * 109.46906 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47242 * 240.00122 * 2 1 3 26 26 H 1.09004 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47673 * 300.00527 * 3 2 1 28 28 H 1.09004 * 109.47179 * 60.00639 * 3 2 1 29 29 H 1.09003 * 109.47142 * 22.10351 * 5 4 2 30 30 H 1.09001 * 109.47222 * 142.10276 * 5 4 2 31 31 H 0.97004 * 119.99523 * 179.97438 * 9 8 6 32 32 H 1.07995 * 123.36563 * 0.02562 * 17 16 14 33 33 H 0.96693 * 114.00181 * 270.00637 * 19 18 17 34 34 H 1.08000 * 124.51212 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7577 -0.1291 2.5239 6 6 2.9665 0.6410 2.9897 7 1 3.8414 0.7053 2.3599 8 6 2.9557 1.2626 4.2204 9 7 1.8908 1.1830 4.9879 10 14 4.4537 2.2178 4.7975 11 1 4.3380 3.6319 4.3594 12 1 4.5347 2.1636 6.2793 13 1 5.6793 1.6170 4.2124 14 6 2.7073 -1.8426 1.0750 15 8 2.9531 -2.2916 -0.0292 16 6 3.1607 -2.5547 2.2729 17 6 3.7294 -3.7981 2.2883 18 6 4.0621 -4.2284 3.5537 19 8 4.6401 -5.4396 3.7864 20 6 3.7745 -3.3661 4.5392 21 16 3.0529 -1.9496 3.9201 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 0.8983 0.5395 2.4734 30 1 1.5490 -0.9368 3.2255 31 1 1.8834 1.6200 5.8539 32 1 3.9013 -4.3837 1.3973 33 1 4.0073 -6.1545 3.9396 34 1 3.9691 -3.5463 5.5862 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825043490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:55 Heat of formation + Delta-G solvation = -47.451961 kcal Electronic energy + Delta-G solvation = -19039.458204 eV Core-core repulsion = 16064.472057 eV Total energy + Delta-G solvation = -2974.986148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.34223 -38.36925 -35.91273 -34.37166 -33.36946 -31.61830 -28.44504 -27.55554 -26.65613 -24.35722 -23.30912 -21.50737 -19.43970 -18.34534 -17.71173 -16.82322 -16.46145 -15.79963 -15.27737 -14.72298 -14.55448 -14.13346 -13.46971 -13.26194 -12.93409 -12.71030 -12.57379 -12.46481 -11.83196 -11.72411 -11.70673 -11.41113 -11.15947 -10.90462 -10.84365 -10.51568 -10.46396 -10.09936 -9.88582 -9.36444 -9.20810 -8.82459 -8.23126 -7.80529 -7.50805 -6.42297 -4.43982 1.25214 2.44302 2.79178 2.94086 3.12908 3.20590 3.25542 3.77013 3.91713 4.17652 4.89067 4.93023 5.31237 5.55683 5.62284 5.69896 5.76996 6.04281 6.05486 6.09511 6.29886 6.33502 6.41945 6.49643 6.64954 6.75967 6.86259 6.90365 6.90804 7.38956 7.55090 7.71908 8.02046 8.16528 8.56989 8.90918 9.16156 10.61621 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.010621 C = 0.006769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.772488 B = 2635.700085 C = 4135.773876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 C -0.152 4.152 4 N -0.591 5.591 5 C 0.228 3.772 6 C -0.534 4.534 7 H 0.071 0.929 8 C 0.075 3.925 9 N -0.876 5.876 10 Si 0.889 3.111 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.591 3.409 15 O -0.567 6.567 16 C -0.283 4.283 17 C -0.105 4.105 18 C 0.053 3.947 19 O -0.494 6.494 20 C -0.370 4.370 21 S 0.433 5.567 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.271 0.729 32 H 0.141 0.859 33 H 0.375 0.625 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 -3.320 -1.521 4.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 C -0.210 4.210 4 N -0.322 5.322 5 C 0.105 3.895 6 C -0.576 4.576 7 H 0.089 0.911 8 C -0.131 4.131 9 N -0.513 5.513 10 Si 0.716 3.284 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.380 3.620 15 O -0.450 6.450 16 C -0.405 4.405 17 C -0.140 4.140 18 C -0.004 4.004 19 O -0.301 6.301 20 C -0.508 4.508 21 S 0.710 5.290 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.227 0.773 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.344 -1.880 -1.233 3.248 hybrid contribution 1.040 -1.135 0.117 1.544 sum -1.304 -3.015 -1.116 3.469 Atomic orbital electron populations 1.22145 0.95725 1.01773 1.02089 1.20894 0.93435 0.93550 0.88742 1.22060 1.01750 0.95332 1.01883 1.48115 1.53078 1.22069 1.08895 1.19608 0.98664 0.94000 0.77244 1.21540 1.00836 1.32423 1.02786 0.91127 1.24910 0.96460 0.95570 0.96138 1.69902 1.27909 1.42365 1.11090 0.86581 0.83075 0.80548 0.78217 1.20125 1.20655 1.19208 1.16953 0.77519 0.80408 0.87095 1.90696 1.59065 1.68456 1.26750 1.24503 1.14915 1.01048 1.00003 1.20472 1.00083 0.95587 0.97866 1.16910 1.04094 0.88344 0.91053 1.84916 1.35383 1.16596 1.93230 1.27076 1.11588 1.07547 1.04570 1.86066 1.45196 1.05000 0.92776 0.91870 0.92115 0.92878 0.89248 0.92435 0.92993 0.90832 0.92540 0.94506 0.91935 0.84150 0.77279 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.26 37.16 0.34 -2.07 16 2 C 0.14 2.46 3.22 -67.93 -0.22 2.24 16 3 C -0.15 -2.55 8.70 37.16 0.32 -2.23 16 4 N -0.59 -12.23 2.38 -169.05 -0.40 -12.63 16 5 C 0.23 4.92 3.87 -5.19 -0.02 4.90 16 6 C -0.53 -12.37 6.15 -34.44 -0.21 -12.58 16 7 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 8 C 0.08 1.76 5.01 -17.82 -0.09 1.67 16 9 N -0.88 -21.05 13.29 55.43 0.74 -20.31 16 10 Si 0.89 18.97 29.54 -169.99 -5.02 13.95 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 14 C 0.59 13.16 7.56 -12.91 -0.10 13.06 16 15 O -0.57 -13.57 16.18 5.18 0.08 -13.49 16 16 C -0.28 -5.98 6.23 -36.77 -0.23 -6.21 16 17 C -0.11 -2.08 10.01 -40.31 -0.40 -2.49 16 18 C 0.05 0.98 6.68 -41.23 -0.28 0.71 16 19 O -0.49 -8.09 13.62 -20.40 -0.28 -8.37 16 20 C -0.37 -6.83 10.89 29.27 0.32 -6.51 16 21 S 0.43 8.73 15.82 -107.50 -1.70 7.03 16 22 H 0.06 0.98 6.93 -51.93 -0.36 0.62 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.09 1.66 6.91 -51.93 -0.36 1.30 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.33 7.10 -51.93 -0.37 0.96 16 29 H 0.06 1.25 6.45 -51.93 -0.33 0.92 16 30 H 0.04 0.84 4.51 -22.33 -0.10 0.74 16 31 H 0.27 6.25 8.31 -40.82 -0.34 5.92 16 32 H 0.14 2.68 8.06 -52.49 -0.42 2.26 16 33 H 0.37 4.16 9.07 45.56 0.41 4.57 16 34 H 0.15 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -27.12 295.48 -5.88 -33.00 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.19 Total: 5.88 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -0.56 Total: -9.50 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.33 Total: -32.94 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.19 Total: -21.86 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Atomic # 16 Polarization: 8.73 SS G_CDS: -1.70 Total: 7.03 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.12 -5.88 -33.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825043490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.452 kcal (2) G-P(sol) polarization free energy of solvation -27.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds