Wall clock time and date at job start Mon Mar 30 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46986 * 2 1 4 4 N 1.46500 * 109.46701 * 119.99964 * 2 1 3 5 5 C 1.39924 * 119.99632 * 274.99723 * 4 2 1 6 6 C 1.38714 * 120.08455 * 0.02562 * 5 4 2 7 7 C 1.38218 * 120.02193 * 179.97438 * 6 5 4 8 8 C 1.38532 * 120.17307 * 0.02562 * 7 6 5 9 9 F 1.35103 * 119.91794 * 179.97438 * 8 7 6 10 10 C 1.38357 * 120.15886 * 0.02562 * 8 7 6 11 11 C 1.38725 * 119.98280 * 359.70194 * 10 8 7 12 12 O 1.35794 * 120.09147 * 180.29844 * 11 10 8 13 13 C 1.34805 * 116.99541 * 354.39823 * 12 11 10 14 14 H 1.07997 * 120.00117 * 5.06817 * 13 12 11 15 15 C 1.38625 * 119.99701 * 185.06587 * 13 12 11 16 16 N 1.31580 * 120.00262 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99968 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47046 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47003 * 119.99919 * 17 15 13 20 20 H 1.48497 * 109.47025 * 239.99674 * 17 15 13 21 21 C 1.50692 * 109.46817 * 239.99809 * 2 1 3 22 22 O 1.20830 * 119.99858 * 239.99897 * 21 2 1 23 23 O 1.34230 * 120.00680 * 60.00319 * 21 2 1 24 24 H 1.08998 * 109.46986 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47132 * 300.00310 * 1 2 3 26 26 H 1.09000 * 109.46777 * 60.00103 * 1 2 3 27 27 H 0.97002 * 120.00229 * 95.00111 * 4 2 1 28 28 H 1.08006 * 119.99121 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.91562 * 180.02562 * 7 6 5 30 30 H 1.07997 * 120.00440 * 180.02562 * 10 8 7 31 31 H 0.97001 * 119.99910 * 180.02562 * 16 15 13 32 32 H 0.96692 * 117.00493 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1519 0.0075 2.4015 6 6 1.8221 1.3533 2.4657 7 6 1.9541 2.0416 3.6571 8 6 2.4160 1.3910 4.7896 9 9 2.5435 2.0688 5.9513 10 6 2.7481 0.0490 4.7335 11 6 2.6128 -0.6495 3.5425 12 8 2.9323 -1.9681 3.4865 13 6 3.4843 -2.5114 4.5899 14 1 3.5784 -1.9244 5.4916 15 6 3.9309 -3.8235 4.5672 16 7 3.8158 -4.5388 3.4688 17 14 4.6951 -4.5767 6.0964 18 1 4.7079 -3.5717 7.1896 19 1 3.8987 -5.7570 6.5176 20 1 6.0868 -4.9997 5.7972 21 6 2.0323 -0.7104 -1.2304 22 8 2.7270 -1.6928 -1.1195 23 8 1.7081 -0.2519 -2.4496 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.2490 -1.6318 1.1527 28 1 1.4612 1.8634 1.5848 29 1 1.6964 3.0892 3.7053 30 1 3.1076 -0.4558 5.6179 31 1 4.1280 -5.4570 3.4530 32 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827767531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:17 Heat of formation + Delta-G solvation = -131.525159 kcal Electronic energy + Delta-G solvation = -20272.551449 eV Core-core repulsion = 16727.706438 eV Total energy + Delta-G solvation = -3544.845011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.09332 -40.41480 -39.17849 -36.87095 -36.14500 -35.07608 -32.33513 -30.98194 -29.33348 -27.27494 -25.43284 -24.82495 -22.39323 -21.44944 -20.35385 -18.33499 -18.19624 -17.66097 -16.87647 -16.13527 -15.63368 -15.32920 -15.13356 -14.87407 -14.45756 -14.20442 -13.82643 -13.65267 -13.35701 -13.02209 -12.90596 -12.36606 -12.21685 -11.93291 -11.72731 -11.57754 -11.38123 -11.28806 -10.90045 -10.57362 -10.43145 -10.38473 -9.60248 -9.43243 -8.87452 -7.79405 -6.56888 -6.47652 -4.04352 2.04253 2.16303 2.21531 2.82151 3.11894 3.14176 3.19685 3.87109 3.96464 4.40602 4.87516 4.99491 5.03455 5.07341 5.18875 5.23484 5.53176 5.61989 5.75617 5.79266 6.02823 6.16834 6.34498 6.43936 6.50656 6.75285 6.96626 7.05646 7.22440 7.52944 7.81095 7.87476 7.97187 8.30874 8.97203 9.62023 10.69145 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.007046 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.431935 B = 3972.900891 C = 5808.731950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.112 0.888 4 N -0.732 5.732 5 C 0.151 3.849 6 C -0.145 4.145 7 C -0.198 4.198 8 C 0.092 3.908 9 F -0.157 7.157 10 C -0.242 4.242 11 C 0.126 3.874 12 O -0.172 6.172 13 C -0.389 4.389 14 H 0.093 0.907 15 C 0.040 3.960 16 N -0.858 5.858 17 Si 0.941 3.059 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.470 3.530 22 O -0.496 6.496 23 O -0.517 6.517 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.419 0.581 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.270 0.730 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 9.132 -7.242 12.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.061 3.939 3 H 0.129 0.871 4 N -0.370 5.370 5 C 0.051 3.949 6 C -0.169 4.169 7 C -0.218 4.218 8 C 0.071 3.929 9 F -0.136 7.136 10 C -0.263 4.263 11 C 0.071 3.929 12 O -0.076 6.076 13 C -0.465 4.465 14 H 0.111 0.889 15 C -0.165 4.165 16 N -0.492 5.492 17 Si 0.766 3.234 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.201 1.201 21 C 0.310 3.690 22 O -0.381 6.381 23 O -0.329 6.329 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.258 0.742 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -5.160 8.762 -7.204 12.462 hybrid contribution 0.813 -0.948 0.471 1.334 sum -4.347 7.814 -6.734 11.194 Atomic orbital electron populations 1.22272 0.93060 1.03539 1.03460 1.20092 0.95410 0.96885 0.81538 0.87096 1.44144 1.74876 1.13350 1.04640 1.16988 1.02577 0.91096 0.84252 1.19967 1.07452 0.91688 0.97778 1.20274 1.09626 0.99832 0.92105 1.17254 1.03999 0.90189 0.81438 1.91386 1.94293 1.80221 1.47653 1.20794 1.12377 0.93399 0.99738 1.18555 0.97226 0.85932 0.91224 1.83917 1.68832 1.15844 1.38985 1.21354 1.39100 0.96425 0.89605 0.88929 1.25284 0.96942 0.95453 0.98779 1.70054 1.43296 1.09361 1.26504 0.85640 0.78711 0.79206 0.79865 1.19017 1.20138 1.20139 1.23709 0.77343 0.82959 0.84939 1.90806 1.34840 1.25675 1.86805 1.84494 1.72492 1.59177 1.16690 0.91728 0.90322 0.90897 0.74215 0.85975 0.86380 0.84307 0.92008 0.73181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.36 37.16 0.35 -1.51 16 2 C 0.17 2.31 2.78 -69.08 -0.19 2.12 16 3 H 0.11 1.30 6.49 -51.93 -0.34 0.97 16 4 N -0.73 -13.52 5.12 -53.12 -0.27 -13.79 16 5 C 0.15 2.99 6.66 -83.52 -0.56 2.43 16 6 C -0.15 -2.42 8.85 -39.41 -0.35 -2.77 16 7 C -0.20 -3.42 10.02 -39.48 -0.40 -3.81 16 8 C 0.09 1.82 7.29 -39.43 -0.29 1.53 16 9 F -0.16 -3.02 17.26 2.25 0.04 -2.98 16 10 C -0.24 -5.35 9.14 -39.36 -0.36 -5.71 16 11 C 0.13 2.96 6.67 -38.93 -0.26 2.70 16 12 O -0.17 -4.71 9.00 -0.02 0.00 -4.71 16 13 C -0.39 -10.69 9.49 30.88 0.29 -10.40 16 14 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 15 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 17 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 C 0.47 6.58 7.69 36.00 0.28 6.86 16 22 O -0.50 -9.13 16.60 -18.75 -0.31 -9.44 16 23 O -0.52 -5.09 13.33 -39.26 -0.52 -5.62 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.89 7.71 -51.93 -0.40 0.49 16 26 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 27 H 0.42 9.06 7.16 -40.82 -0.29 8.77 16 28 H 0.12 1.60 6.12 -52.48 -0.32 1.28 16 29 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.41 2.39 9.10 45.56 0.41 2.80 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -32.05 289.34 -4.46 -36.50 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -1.91 Total: 11.79 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.58 Total: -7.57 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.49 Total: -37.86 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.83 Total: -19.77 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.05 -4.46 -36.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827767531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.023 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds