Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46986 * 2 1 4 4 N 1.46500 * 109.46701 * 119.99964 * 2 1 3 5 5 C 1.39924 * 119.99632 * 274.99723 * 4 2 1 6 6 C 1.38714 * 120.08455 * 0.02562 * 5 4 2 7 7 C 1.38218 * 120.02193 * 179.97438 * 6 5 4 8 8 C 1.38532 * 120.17307 * 0.02562 * 7 6 5 9 9 F 1.35103 * 119.91794 * 179.97438 * 8 7 6 10 10 C 1.38357 * 120.15886 * 0.02562 * 8 7 6 11 11 C 1.38725 * 119.98280 * 359.70194 * 10 8 7 12 12 O 1.35794 * 120.09147 * 180.29844 * 11 10 8 13 13 C 1.34805 * 116.99541 * 354.39823 * 12 11 10 14 14 H 1.07997 * 120.00117 * 5.06817 * 13 12 11 15 15 C 1.38625 * 119.99701 * 185.06587 * 13 12 11 16 16 N 1.31580 * 120.00262 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99968 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47046 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47003 * 119.99919 * 17 15 13 20 20 H 1.48497 * 109.47025 * 239.99674 * 17 15 13 21 21 C 1.50692 * 109.46817 * 239.99809 * 2 1 3 22 22 O 1.20830 * 119.99858 * 239.99897 * 21 2 1 23 23 O 1.34230 * 120.00680 * 60.00319 * 21 2 1 24 24 H 1.08998 * 109.46986 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47132 * 300.00310 * 1 2 3 26 26 H 1.09000 * 109.46777 * 60.00103 * 1 2 3 27 27 H 0.97002 * 120.00229 * 95.00111 * 4 2 1 28 28 H 1.08006 * 119.99121 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.91562 * 180.02562 * 7 6 5 30 30 H 1.07997 * 120.00440 * 180.02562 * 10 8 7 31 31 H 0.97001 * 119.99910 * 180.02562 * 16 15 13 32 32 H 0.96692 * 117.00493 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1519 0.0075 2.4015 6 6 1.8221 1.3533 2.4657 7 6 1.9541 2.0416 3.6571 8 6 2.4160 1.3910 4.7896 9 9 2.5435 2.0688 5.9513 10 6 2.7481 0.0490 4.7335 11 6 2.6128 -0.6495 3.5425 12 8 2.9323 -1.9681 3.4865 13 6 3.4843 -2.5114 4.5899 14 1 3.5784 -1.9244 5.4916 15 6 3.9309 -3.8235 4.5672 16 7 3.8158 -4.5388 3.4688 17 14 4.6951 -4.5767 6.0964 18 1 4.7079 -3.5717 7.1896 19 1 3.8987 -5.7570 6.5176 20 1 6.0868 -4.9997 5.7972 21 6 2.0323 -0.7104 -1.2304 22 8 2.7270 -1.6928 -1.1195 23 8 1.7081 -0.2519 -2.4496 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.2490 -1.6318 1.1527 28 1 1.4612 1.8634 1.5848 29 1 1.6964 3.0892 3.7053 30 1 3.1076 -0.4558 5.6179 31 1 4.1280 -5.4570 3.4530 32 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827767531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = -155.085157 kcal Electronic energy + Delta-G solvation = -20273.573087 eV Core-core repulsion = 16727.706438 eV Total energy + Delta-G solvation = -3545.866649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.63319 -41.57499 -40.76992 -38.44491 -37.24838 -36.44679 -34.28838 -32.26696 -30.94885 -28.72147 -27.34767 -25.89656 -23.91832 -22.95360 -21.59408 -20.02103 -19.65674 -18.94831 -18.32041 -17.47806 -17.00181 -16.77690 -16.68167 -16.44466 -15.95251 -15.70099 -15.46554 -15.12630 -14.97457 -14.26503 -14.19656 -13.81709 -13.63473 -13.32546 -13.15986 -12.92967 -12.67322 -12.62383 -12.42140 -12.15992 -12.02038 -11.56617 -11.48960 -10.87745 -10.80893 -9.43718 -8.46898 -8.12101 -6.10841 0.47054 0.61044 1.10889 1.34018 1.41163 1.51451 1.78521 2.15511 2.57545 2.76893 3.10162 3.33515 3.64794 3.91465 4.03443 4.05979 4.20221 4.29350 4.48594 4.62847 4.83777 4.91204 5.02125 5.09201 5.28214 5.32545 5.43715 5.46596 5.54302 5.94319 6.02824 6.44093 6.62526 6.94102 6.98012 7.75645 8.75107 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.007046 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.431935 B = 3972.900891 C = 5808.731950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.161 3.839 3 H 0.143 0.857 4 N -0.741 5.741 5 C 0.151 3.849 6 C -0.129 4.129 7 C -0.162 4.162 8 C 0.070 3.930 9 F -0.154 7.154 10 C -0.247 4.247 11 C 0.081 3.919 12 O -0.219 6.219 13 C -0.409 4.409 14 H 0.096 0.904 15 C -0.019 4.019 16 N -0.914 5.914 17 Si 1.014 2.986 18 H -0.255 1.255 19 H -0.268 1.268 20 H -0.270 1.270 21 C 0.479 3.521 22 O -0.551 6.551 23 O -0.496 6.496 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.399 0.601 28 H 0.173 0.827 29 H 0.163 0.837 30 H 0.121 0.879 31 H 0.271 0.729 32 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 12.401 -8.079 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.160 0.840 4 N -0.376 5.376 5 C 0.050 3.950 6 C -0.152 4.152 7 C -0.181 4.181 8 C 0.049 3.951 9 F -0.133 7.133 10 C -0.268 4.268 11 C 0.028 3.972 12 O -0.125 6.125 13 C -0.485 4.485 14 H 0.113 0.887 15 C -0.217 4.217 16 N -0.552 5.552 17 Si 0.834 3.166 18 H -0.179 1.179 19 H -0.193 1.193 20 H -0.195 1.195 21 C 0.322 3.678 22 O -0.441 6.441 23 O -0.309 6.309 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.125 0.875 27 H 0.234 0.766 28 H 0.191 0.809 29 H 0.181 0.819 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -6.369 12.128 -8.088 15.908 hybrid contribution 1.031 -1.603 0.558 1.985 sum -5.338 10.526 -7.530 13.999 Atomic orbital electron populations 1.22242 0.90762 1.03144 1.05350 1.20519 0.96921 0.97479 0.79612 0.83999 1.44372 1.74624 1.12692 1.05872 1.17339 1.01538 0.92255 0.83849 1.20514 1.05312 0.89960 0.99412 1.20844 1.05119 1.01577 0.90589 1.17378 1.05571 0.89465 0.82694 1.91390 1.94409 1.79825 1.47722 1.20844 1.12214 0.94782 0.98943 1.19111 0.99395 0.85397 0.93249 1.83891 1.71437 1.18024 1.39169 1.21736 1.39471 0.97089 0.90184 0.88664 1.26454 0.97408 0.95677 1.02192 1.70194 1.46065 1.09838 1.29103 0.84590 0.77786 0.78381 0.75858 1.17885 1.19267 1.19489 1.23764 0.76042 0.81879 0.86139 1.90811 1.37487 1.28145 1.87626 1.84431 1.71693 1.58680 1.16100 0.93394 0.89759 0.87514 0.76610 0.80938 0.81931 0.86115 0.91990 0.70815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.36 71.98 0.67 -2.31 16 2 C 0.16 3.95 2.78 44.24 0.12 4.08 16 3 H 0.14 2.59 6.49 -2.39 -0.02 2.58 16 4 N -0.74 -27.17 5.12 -321.96 -1.65 -28.82 16 5 C 0.15 5.85 6.66 38.27 0.25 6.11 16 6 C -0.13 -3.72 8.85 22.38 0.20 -3.52 16 7 C -0.16 -4.80 10.02 22.34 0.22 -4.58 16 8 C 0.07 2.64 7.29 22.37 0.16 2.80 16 9 F -0.15 -5.67 17.26 44.97 0.78 -4.89 16 10 C -0.25 -11.15 9.14 22.41 0.20 -10.95 16 11 C 0.08 3.93 6.67 22.69 0.15 4.08 16 12 O -0.22 -12.77 9.00 -22.97 -0.21 -12.98 16 13 C -0.41 -23.90 9.49 67.91 0.64 -23.25 16 14 H 0.10 5.25 5.21 -2.91 -0.02 5.23 16 15 C -0.02 -1.11 5.49 84.82 0.47 -0.64 16 16 N -0.91 -56.24 13.67 21.61 0.30 -55.95 16 17 Si 1.01 43.93 29.55 68.60 2.03 45.96 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 C 0.48 12.62 7.69 71.23 0.55 13.17 16 22 O -0.55 -20.64 16.60 21.95 0.36 -20.27 16 23 O -0.50 -8.17 13.33 -51.41 -0.69 -8.86 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.54 7.71 -2.39 -0.02 1.52 16 26 H 0.11 1.35 8.11 -2.39 -0.02 1.33 16 27 H 0.40 18.15 7.16 -92.71 -0.66 17.49 16 28 H 0.17 3.27 6.12 -2.91 -0.02 3.25 16 29 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.12 5.76 5.64 -2.91 -0.02 5.74 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.43 3.78 9.10 -74.06 -0.67 3.11 16 Total: -1.00 -76.48 289.34 4.44 -72.04 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.13 Total: 28.79 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 3.65 Total: -15.01 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.35 Total: -84.76 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.53 Total: -42.11 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.78 Total: -4.89 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -76.48 4.44 -72.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827767531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.046 kcal (2) G-P(sol) polarization free energy of solvation -76.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds