Wall clock time and date at job start Mon Mar 30 2020 01:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.50701 * 109.46892 * 240.00474 * 2 1 3 5 5 H 1.08003 * 119.99561 * 239.99925 * 4 2 1 6 6 C 1.37874 * 120.00335 * 59.99933 * 4 2 1 7 7 N 1.31511 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99790 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47550 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46870 * 119.99861 * 8 6 4 11 11 H 1.48500 * 109.47251 * 239.99905 * 8 6 4 12 12 C 1.52994 * 109.47208 * 120.00132 * 2 1 3 13 13 O 1.45202 * 109.46919 * 300.00395 * 12 2 1 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 2 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.33642 * 126.04087 * 89.99652 * 17 16 14 19 19 N 1.31779 * 114.50174 * 179.97438 * 18 17 16 20 20 C 1.29029 * 117.12665 * 0.02562 * 19 18 17 21 21 S 1.70979 * 110.16427 * 359.71885 * 20 19 18 22 22 H 1.08996 * 109.47459 * 300.00192 * 1 2 3 23 23 H 1.09001 * 109.46957 * 59.99663 * 1 2 3 24 24 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47128 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47549 * 299.99975 * 3 2 1 27 27 H 1.09005 * 109.47490 * 60.00171 * 3 2 1 28 28 H 0.97002 * 119.99980 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47242 * 179.97438 * 12 2 1 30 30 H 1.09004 * 109.46797 * 59.99640 * 12 2 1 31 31 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 32 32 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 33 33 H 1.07999 * 122.74776 * 0.02562 * 18 17 16 34 34 H 1.07993 * 124.92003 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 6 2.0400 -0.7212 1.2492 13 8 1.5559 -0.0368 2.4347 14 6 1.9170 -0.5466 3.6228 15 8 2.6142 -1.5324 3.6705 16 6 1.4475 0.1065 4.8971 17 6 1.9823 -0.6583 6.0803 18 6 3.1433 -0.4330 6.7026 19 7 3.3862 -1.2403 7.7154 20 6 2.4948 -2.1344 7.9820 21 16 1.1838 -2.0028 6.8923 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 0.7089 1.1615 -3.4844 29 1 3.1300 -0.7216 1.2489 30 1 1.6766 -1.7489 1.2491 31 1 1.8107 1.1336 4.9341 32 1 0.3579 0.1053 4.9260 33 1 3.8262 0.3472 6.4006 34 1 2.5647 -2.8581 8.7804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842336936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:53 Heat of formation + Delta-G solvation = -49.818098 kcal Electronic energy + Delta-G solvation = -18060.693573 eV Core-core repulsion = 15085.604822 eV Total energy + Delta-G solvation = -2975.088751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22729 -39.49405 -36.68918 -34.87899 -33.02652 -31.27894 -28.25787 -25.84840 -25.64978 -25.22068 -24.47720 -21.15189 -20.08847 -18.88353 -18.20033 -17.36135 -16.26310 -15.92416 -15.74019 -15.32165 -14.73483 -14.24642 -14.12002 -13.57728 -13.18161 -13.08462 -12.72242 -12.43737 -11.85962 -11.51836 -11.36060 -11.22247 -10.99974 -10.69686 -10.44964 -10.29623 -10.14804 -9.93630 -9.82766 -9.48129 -9.44680 -9.31874 -9.08216 -8.77788 -8.40469 -6.04606 -4.16205 0.50664 1.18908 1.57932 2.52111 2.64406 3.25231 3.25577 3.34001 3.39623 4.15599 4.36761 4.50380 4.87279 5.08097 5.22054 5.22484 5.32964 5.54204 5.97186 6.05167 6.06843 6.43441 6.71120 6.95159 7.01987 7.10460 7.11702 7.37258 7.52427 7.59179 7.67803 8.02341 8.10620 8.19755 8.36523 8.83953 9.49612 10.96639 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.045344 B = 0.003672 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.348830 B = 7624.024859 C = 7747.111714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.129 4.129 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.085 3.915 13 O -0.347 6.347 14 C 0.453 3.547 15 O -0.510 6.510 16 C -0.039 4.039 17 C -0.205 4.205 18 C 0.047 3.953 19 N -0.471 5.471 20 C 0.014 3.986 21 S 0.138 5.862 22 H 0.017 0.983 23 H 0.084 0.916 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.084 0.916 27 H 0.017 0.983 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.176 0.824 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 -1.185 17.306 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.012 3.988 13 O -0.262 6.262 14 C 0.294 3.706 15 O -0.399 6.399 16 C -0.079 4.079 17 C -0.326 4.326 18 C -0.104 4.104 19 N -0.184 5.184 20 C -0.283 4.283 21 S 0.390 5.610 22 H 0.036 0.964 23 H 0.103 0.897 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.103 0.897 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.193 0.807 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.906 -1.915 17.374 17.582 hybrid contribution 1.087 -0.064 -1.137 1.574 sum -0.818 -1.979 16.237 16.378 Atomic orbital electron populations 1.21769 0.97290 0.98949 1.00693 1.18261 0.93456 0.93111 0.88285 1.21771 0.98087 0.98153 1.00699 1.20976 1.31938 1.12303 0.89799 0.92465 1.24853 0.94782 0.94905 0.98799 1.69836 1.36376 1.22576 1.23225 0.86488 0.78674 0.79709 0.82850 1.19772 1.20939 1.20930 1.23699 0.98242 0.95787 0.81024 1.86512 1.69039 1.55907 1.14785 1.23268 0.78185 0.82820 0.86314 1.90659 1.35471 1.25542 1.88259 1.19620 1.03257 0.99647 0.85335 1.25357 1.00479 1.02847 1.03906 1.21735 0.95557 1.00451 0.92703 1.66317 1.29895 1.05059 1.17151 1.28358 0.93806 1.01939 1.04165 1.84010 1.23440 1.28807 1.24724 0.96444 0.89717 0.95844 0.95833 0.89715 0.96432 0.92938 0.92491 0.92524 0.85593 0.86498 0.80700 0.78473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 2 C 0.07 1.67 0.58 -155.66 -0.09 1.58 16 3 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 4 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -23.72 9.35 55.43 0.52 -23.21 16 8 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.09 1.86 4.26 37.15 0.16 2.02 16 13 O -0.35 -6.61 8.88 -39.26 -0.35 -6.96 16 14 C 0.45 7.54 7.95 36.00 0.29 7.82 16 15 O -0.51 -10.02 15.78 -18.76 -0.30 -10.32 16 16 C -0.04 -0.44 6.35 -29.04 -0.18 -0.62 16 17 C -0.20 -2.43 5.09 -35.92 -0.18 -2.61 16 18 C 0.05 0.57 11.25 -19.18 -0.22 0.36 16 19 N -0.47 -5.96 10.54 -15.75 -0.17 -6.12 16 20 C 0.01 0.15 12.23 51.58 0.63 0.78 16 21 S 0.14 1.41 23.22 -107.50 -2.50 -1.08 16 22 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 23 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 27 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 28 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 30 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 304.22 15.07 4.58 4.58 Total: -1.00 -30.36 304.22 -6.94 -37.30 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.35 Total: -1.53 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 0.64 Total: -8.35 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 0.35 Total: -29.33 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.64 Total: -17.28 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.50 Total: -1.08 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.36 -6.94 -37.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842336936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.519 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds