Wall clock time and date at job start Mon Mar 30 2020 01:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 H 1.09002 * 109.47252 * 305.00089 * 3 2 1 5 5 O 1.42894 * 109.47158 * 64.99939 * 3 2 1 6 6 C 1.53005 * 109.47238 * 185.00291 * 3 2 1 7 7 N 1.46498 * 109.47274 * 180.02562 * 6 3 2 8 8 C 1.34774 * 120.00251 * 179.97438 * 7 6 3 9 9 O 1.21761 * 119.99852 * 0.02562 * 8 7 6 10 10 C 1.46235 * 120.00075 * 179.97438 * 8 7 6 11 11 S 1.75668 * 125.23049 * 0.03366 * 10 8 7 12 12 C 1.75469 * 92.09417 * 179.97438 * 11 10 8 13 13 C 1.32768 * 111.36025 * 359.97438 * 12 11 10 14 14 C 1.39545 * 125.22800 * 179.72002 * 10 8 7 15 15 C 1.40538 * 123.71434 * 0.02562 * 14 10 8 16 16 H 1.08005 * 119.99901 * 23.42777 * 15 14 10 17 17 C 1.40305 * 119.99951 * 203.42796 * 15 14 10 18 18 N 1.30642 * 120.00349 * 9.79060 * 17 15 14 19 19 Si 1.86803 * 119.99961 * 189.78944 * 17 15 14 20 20 H 1.48507 * 109.47219 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47106 * 119.99942 * 19 17 15 22 22 H 1.48495 * 109.47433 * 240.00306 * 19 17 15 23 23 H 1.08992 * 109.47375 * 59.99991 * 1 2 3 24 24 H 1.09000 * 109.46784 * 299.99574 * 1 2 3 25 25 H 1.08998 * 109.46499 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47394 * 120.00033 * 2 1 3 27 27 H 1.08997 * 109.47493 * 240.00251 * 2 1 3 28 28 H 0.96707 * 114.00278 * 60.00392 * 5 3 2 29 29 H 1.09002 * 109.46834 * 300.00054 * 6 3 2 30 30 H 1.08994 * 109.46715 * 59.99767 * 6 3 2 31 31 H 0.97008 * 119.99902 * 359.97438 * 7 6 3 32 32 H 1.08004 * 124.32018 * 179.97438 * 12 11 10 33 33 H 1.08000 * 122.77864 * 179.97438 * 13 12 11 34 34 H 0.97000 * 120.00091 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 3.5649 1.4445 -0.1258 7 7 4.0532 2.8257 -0.1252 8 6 5.3741 3.0735 -0.2263 9 8 6.1616 2.1494 -0.3187 10 6 5.8615 4.4522 -0.2263 11 16 4.8515 5.8841 -0.1010 12 6 6.2421 6.9509 -0.1839 13 6 7.3726 6.2639 -0.2965 14 6 7.2009 4.8325 -0.3195 15 6 8.2649 3.9208 -0.4274 16 1 8.0883 2.9281 -0.8144 17 6 9.5566 4.3002 -0.0322 18 7 9.7399 5.4230 0.6101 19 14 11.0143 3.1998 -0.4243 20 1 10.5430 1.9946 -1.1528 21 1 11.9822 3.9433 -1.2704 22 1 11.6766 2.7865 0.8389 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.0142 1.6543 2.0139 29 1 3.9995 0.9054 0.7160 30 1 3.8531 0.9571 -1.0571 31 1 3.4258 3.5619 -0.0520 32 1 6.1857 8.0289 -0.1479 33 1 8.3408 6.7379 -0.3625 34 1 10.6329 5.6851 0.8836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869261560.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:02 Heat of formation + Delta-G solvation = -107.426136 kcal Electronic energy + Delta-G solvation = -18010.776544 eV Core-core repulsion = 15033.189721 eV Total energy + Delta-G solvation = -2977.586823 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34535 -38.87171 -37.76402 -34.97674 -34.91321 -33.70269 -31.01156 -29.73278 -27.70750 -24.75473 -23.55132 -22.49619 -21.62187 -20.63193 -19.42512 -17.68238 -17.52044 -17.22021 -16.95643 -16.24946 -15.91400 -15.58214 -15.35226 -14.95566 -14.36792 -14.22816 -13.93090 -13.71574 -13.40976 -13.09583 -13.07418 -12.92314 -12.83643 -12.71440 -12.10511 -12.01433 -11.84357 -11.75911 -11.42532 -11.09771 -10.98123 -10.37110 -9.95290 -9.35391 -8.94924 -8.86343 -6.46366 0.29980 1.32281 1.34243 1.36803 1.49881 1.78435 1.96816 2.17672 2.51624 2.54610 3.30738 3.49219 3.68706 3.99781 4.08549 4.36072 4.38177 4.54427 4.62683 4.85042 4.87366 4.96386 5.01577 5.11355 5.27302 5.28426 5.38636 5.42033 5.56854 5.72587 5.83647 6.39398 6.57101 6.71117 6.76141 6.96665 7.72521 8.07372 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.005152 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.674241 B = 5433.401047 C = 6499.604717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C 0.108 3.892 4 H 0.103 0.897 5 O -0.568 6.568 6 C 0.093 3.907 7 N -0.732 5.732 8 C 0.589 3.411 9 O -0.606 6.606 10 C -0.469 4.469 11 S 0.007 5.993 12 C -0.192 4.192 13 C -0.129 4.129 14 C 0.111 3.889 15 C -0.417 4.417 16 H 0.084 0.916 17 C 0.035 3.965 18 N -0.793 5.793 19 Si 0.991 3.009 20 H -0.270 1.270 21 H -0.247 1.247 22 H -0.259 1.259 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.386 0.614 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.177 0.823 33 H 0.142 0.858 34 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 -4.002 -0.144 10.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.186 4.186 3 C 0.049 3.951 4 H 0.121 0.879 5 O -0.375 6.375 6 C -0.031 4.031 7 N -0.384 5.384 8 C 0.385 3.615 9 O -0.492 6.492 10 C -0.588 4.588 11 S 0.262 5.738 12 C -0.326 4.326 13 C -0.161 4.161 14 C 0.100 3.900 15 C -0.448 4.448 16 H 0.102 0.898 17 C -0.185 4.185 18 N -0.418 5.418 19 Si 0.810 3.190 20 H -0.194 1.194 21 H -0.171 1.171 22 H -0.183 1.183 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.235 0.765 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.235 0.765 32 H 0.195 0.805 33 H 0.159 0.841 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.012 -3.862 -0.360 11.675 hybrid contribution 2.278 -0.561 0.214 2.356 sum -8.733 -4.423 -0.146 9.791 Atomic orbital electron populations 1.21667 0.94077 1.02185 1.02221 1.22117 0.97711 0.94878 1.03852 1.22139 0.89894 0.94972 0.88102 0.87890 1.86544 1.76605 1.58153 1.16226 1.22053 0.96002 0.83307 1.01724 1.45572 1.06425 1.08677 1.77768 1.17058 0.81760 0.87389 0.75258 1.90609 1.56456 1.46670 1.55501 1.23081 0.96755 0.94191 1.44763 1.82398 1.10896 0.97290 1.83179 1.25465 0.95530 1.03095 1.08502 1.21621 0.98869 0.93261 1.02374 1.18404 0.91525 0.92529 0.87529 1.20055 0.92111 1.00241 1.32406 0.89818 1.27070 1.02919 0.96819 0.91669 1.69656 1.26693 1.21033 1.24404 0.85027 0.75894 0.78440 0.79620 1.19441 1.17062 1.18308 0.92693 0.92515 0.91526 0.90601 0.90200 0.76453 0.92675 0.92104 0.76475 0.80543 0.84058 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.81 71.98 0.71 -1.52 16 2 C -0.15 -2.57 5.61 30.60 0.17 -2.39 16 3 C 0.11 2.49 3.05 30.60 0.09 2.59 16 4 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 5 O -0.57 -13.58 12.62 -148.98 -1.88 -15.46 16 6 C 0.09 2.95 5.34 86.38 0.46 3.41 16 7 N -0.73 -29.19 5.44 -467.48 -2.54 -31.73 16 8 C 0.59 30.28 7.76 86.32 0.67 30.95 16 9 O -0.61 -35.13 14.45 -4.54 -0.07 -35.20 16 10 C -0.47 -24.70 6.51 24.66 0.16 -24.54 16 11 S 0.01 0.29 22.25 -56.49 -1.26 -0.97 16 12 C -0.19 -8.16 11.07 66.64 0.74 -7.42 16 13 C -0.13 -6.37 9.04 22.60 0.20 -6.17 16 14 C 0.11 6.21 5.67 -20.89 -0.12 6.09 16 15 C -0.42 -23.77 8.52 23.33 0.20 -23.58 16 16 H 0.08 5.12 6.03 -2.91 -0.02 5.10 16 17 C 0.04 1.76 5.39 85.37 0.46 2.22 16 18 N -0.79 -38.79 10.82 21.89 0.24 -38.56 16 19 Si 0.99 38.58 29.57 68.60 2.03 40.61 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 22 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 0.93 7.82 -2.39 -0.02 0.92 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.39 7.18 9.05 -74.05 -0.67 6.51 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.40 14.88 7.43 -92.70 -0.69 14.19 16 32 H 0.18 5.98 8.06 -2.91 -0.02 5.96 16 33 H 0.14 6.96 6.41 -2.91 -0.02 6.94 16 34 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 Total: -1.00 -66.96 304.32 0.04 -66.91 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.22 Total: 34.76 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 3.75 Total: -20.36 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -2.31 Total: -70.29 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -1.95 Total: -50.66 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.26 Total: -0.97 kcal Total: -66.96 0.04 -66.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869261560.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.515 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds