Wall clock time and date at job start Mon Mar 30 2020 01:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35715 * 116.99754 * 2 1 4 4 C 1.39388 * 120.35685 * 0.02562 * 3 2 1 5 5 N 1.31263 * 120.88867 * 179.97438 * 4 3 2 6 6 C 1.32931 * 121.71234 * 0.02562 * 5 4 3 7 7 C 1.47630 * 119.69159 * 180.02562 * 6 5 4 8 8 O 1.21490 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.34736 * 120.00340 * 359.97438 * 7 6 5 10 10 C 1.45195 * 117.00562 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.47081 * 29.99849 * 10 9 7 12 12 C 1.53002 * 109.47019 * 269.99840 * 10 9 7 13 13 C 1.50697 * 109.47467 * 149.99830 * 10 9 7 14 14 H 1.08007 * 119.99765 * 359.97438 * 13 10 9 15 15 C 1.37872 * 120.00454 * 180.02562 * 13 10 9 16 16 N 1.31522 * 119.99614 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 120.00316 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47579 * 89.99830 * 17 15 13 19 19 H 1.48505 * 109.47170 * 210.00030 * 17 15 13 20 20 H 1.48500 * 109.47045 * 329.99585 * 17 15 13 21 21 C 1.39775 * 120.62039 * 359.97438 * 6 5 4 22 22 F 1.35097 * 120.46867 * 179.74760 * 21 6 5 23 23 C 1.38682 * 119.06087 * 0.02562 * 21 6 5 24 24 H 1.09000 * 109.47007 * 299.99234 * 1 2 3 25 25 H 1.08996 * 109.47098 * 59.99793 * 1 2 3 26 26 H 1.09001 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.55801 * 359.97300 * 4 3 2 28 28 H 1.09001 * 109.46853 * 179.97438 * 12 10 9 29 29 H 1.08995 * 109.47046 * 299.99498 * 12 10 9 30 30 H 1.09005 * 109.47262 * 60.00309 * 12 10 9 31 31 H 0.97000 * 120.00097 * 180.02562 * 16 15 13 32 32 H 1.08006 * 120.78429 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2932 2.3829 0.0005 5 7 1.8782 3.5580 0.0010 6 6 3.2019 3.6796 0.0006 7 6 3.8129 5.0235 0.0017 8 8 5.0221 5.1411 0.0018 9 8 3.0295 6.1197 0.0028 10 6 3.6986 7.4083 0.0045 11 1 4.6561 7.3212 -0.5092 12 6 3.9332 7.8592 1.4476 13 6 2.8384 8.4220 -0.7050 14 1 1.8843 8.1272 -1.1165 15 6 3.2698 9.7256 -0.8298 16 7 4.4318 10.0845 -0.3292 17 14 2.2032 10.9823 -1.7086 18 1 1.2998 11.6369 -0.7286 19 1 3.0687 12.0073 -2.3454 20 1 1.3932 10.3018 -2.7508 21 6 4.0209 2.5469 0.0000 22 9 5.3659 2.6740 -0.0056 23 6 3.4332 1.2907 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2147 2.3248 0.0005 28 1 4.4359 8.8264 1.4489 29 1 2.9757 7.9464 1.9612 30 1 4.5554 7.1260 1.9608 31 1 4.7352 11.0017 -0.4166 32 1 4.0394 0.3968 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:49 Heat of formation + Delta-G solvation = -126.298347 kcal Electronic energy + Delta-G solvation = -20054.681105 eV Core-core repulsion = 16510.062745 eV Total energy + Delta-G solvation = -3544.618360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.04138 -40.95359 -39.42453 -38.18362 -35.67478 -33.23870 -32.57647 -30.86140 -29.43467 -27.99376 -25.30424 -24.97594 -23.53476 -21.86158 -20.05134 -18.81592 -18.16877 -17.56269 -16.55105 -16.48867 -16.27854 -15.84822 -15.76367 -15.05234 -14.81101 -14.75280 -14.22222 -13.49130 -13.38558 -13.11548 -12.79371 -12.41521 -12.20770 -11.94420 -11.75902 -11.19129 -11.03942 -10.79008 -10.34773 -10.25466 -10.13286 -9.78478 -9.65621 -9.50593 -8.87251 -8.80550 -8.44985 -6.14239 -4.20549 0.37942 0.77668 2.54279 2.75272 3.26661 3.28402 3.34321 3.41596 3.70255 3.90820 4.11465 4.19236 4.35837 4.59959 4.65995 4.73035 4.90339 5.07226 5.12936 5.19087 5.49341 5.75901 6.10756 6.64623 6.67590 6.92955 6.94154 7.13945 7.46596 7.62679 7.75064 7.93962 8.16943 8.61132 8.90996 9.44263 10.93454 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.004494 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.875421 B = 6229.173526 C = 6943.952261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.129 3.871 4 C 0.006 3.994 5 N -0.362 5.362 6 C 0.034 3.966 7 C 0.510 3.490 8 O -0.501 6.501 9 O -0.328 6.328 10 C 0.212 3.788 11 H 0.048 0.952 12 C -0.155 4.155 13 C -0.518 4.518 14 H 0.070 0.930 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.913 3.087 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.155 3.845 22 F -0.097 7.097 23 C -0.163 4.163 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.174 0.826 28 H 0.100 0.900 29 H 0.038 0.962 30 H 0.016 0.984 31 H 0.266 0.734 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.252 -19.544 1.288 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.080 3.920 4 C -0.157 4.157 5 N -0.073 5.073 6 C -0.104 4.104 7 C 0.351 3.649 8 O -0.390 6.390 9 O -0.243 6.243 10 C 0.160 3.840 11 H 0.066 0.934 12 C -0.212 4.212 13 C -0.556 4.556 14 H 0.089 0.911 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.740 3.260 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.132 3.868 22 F -0.075 7.075 23 C -0.190 4.190 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.125 0.875 27 H 0.190 0.810 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.116 -18.689 1.304 20.040 hybrid contribution 0.093 0.056 -0.373 0.388 sum -7.023 -18.633 0.931 19.934 Atomic orbital electron populations 1.23269 0.76998 1.04869 1.02359 1.86045 1.22450 1.25532 1.87421 1.20082 0.92078 0.86098 0.93771 1.23204 1.01274 0.86308 1.04902 1.67715 1.09214 1.26035 1.04338 1.20579 0.89417 0.92112 1.08314 1.20231 0.85106 0.85254 0.74264 1.90862 1.14767 1.87242 1.46131 1.86660 1.40971 1.15957 1.80683 1.20759 0.94262 0.74087 0.94927 0.93385 1.22168 0.99755 1.02872 0.96452 1.21024 1.05330 0.92929 1.36313 0.91148 1.24884 0.95426 0.98053 0.95634 1.69906 1.19240 1.18726 1.44943 0.86253 0.79812 0.80315 0.79629 1.20359 1.21009 1.19613 1.18248 0.78725 0.92642 0.97148 1.91655 1.27122 1.96407 1.92285 1.20738 0.92848 0.97444 1.07923 0.91708 0.91695 0.87481 0.80954 0.88129 0.94298 0.96490 0.92423 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.30 -2.59 10.50 -18.85 -0.20 -2.78 16 3 C 0.13 1.38 6.72 -38.85 -0.26 1.12 16 4 C 0.01 0.07 10.21 -17.37 -0.18 -0.10 16 5 N -0.36 -6.05 10.10 -9.64 -0.10 -6.15 16 6 C 0.03 0.62 6.75 -82.98 -0.56 0.06 16 7 C 0.51 11.80 7.91 34.56 0.27 12.07 16 8 O -0.50 -12.55 14.56 -19.26 -0.28 -12.83 16 9 O -0.33 -8.41 9.67 -40.59 -0.39 -8.80 16 10 C 0.21 5.92 2.56 -27.88 -0.07 5.85 16 11 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 12 C -0.15 -4.06 9.33 37.16 0.35 -3.71 16 13 C -0.52 -14.96 8.90 -34.44 -0.31 -15.26 16 14 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.70 11.32 55.43 0.63 -25.08 16 17 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.15 2.41 7.31 -38.84 -0.28 2.12 16 22 F -0.10 -1.64 15.54 2.25 0.03 -1.61 16 23 C -0.16 -1.90 10.10 -39.12 -0.40 -2.29 16 24 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 25 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 26 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.17 1.40 6.31 -52.48 -0.33 1.07 16 28 H 0.10 2.78 6.07 -51.93 -0.32 2.47 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 290.95 15.07 4.38 4.38 Total: -1.00 -33.20 290.95 -4.53 -37.73 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -3.05 Total: -3.87 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.54 Total: 2.57 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.53 Total: -31.22 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.87 Total: -24.41 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.03 Total: -1.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.20 -4.53 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.565 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds