Wall clock time and date at job start Mon Mar 30 2020 01:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35715 * 116.99754 * 2 1 4 4 C 1.39388 * 120.35685 * 0.02562 * 3 2 1 5 5 N 1.31263 * 120.88867 * 179.97438 * 4 3 2 6 6 C 1.32931 * 121.71234 * 0.02562 * 5 4 3 7 7 C 1.47630 * 119.69159 * 180.02562 * 6 5 4 8 8 O 1.21490 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.34736 * 120.00340 * 359.97438 * 7 6 5 10 10 C 1.45195 * 117.00562 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.47081 * 29.99849 * 10 9 7 12 12 C 1.53002 * 109.47019 * 269.99840 * 10 9 7 13 13 C 1.50697 * 109.47467 * 149.99830 * 10 9 7 14 14 H 1.08007 * 119.99765 * 359.97438 * 13 10 9 15 15 C 1.37872 * 120.00454 * 180.02562 * 13 10 9 16 16 N 1.31522 * 119.99614 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 120.00316 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47579 * 89.99830 * 17 15 13 19 19 H 1.48505 * 109.47170 * 210.00030 * 17 15 13 20 20 H 1.48500 * 109.47045 * 329.99585 * 17 15 13 21 21 C 1.39775 * 120.62039 * 359.97438 * 6 5 4 22 22 F 1.35097 * 120.46867 * 179.74760 * 21 6 5 23 23 C 1.38682 * 119.06087 * 0.02562 * 21 6 5 24 24 H 1.09000 * 109.47007 * 299.99234 * 1 2 3 25 25 H 1.08996 * 109.47098 * 59.99793 * 1 2 3 26 26 H 1.09001 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.55801 * 359.97300 * 4 3 2 28 28 H 1.09001 * 109.46853 * 179.97438 * 12 10 9 29 29 H 1.08995 * 109.47046 * 299.99498 * 12 10 9 30 30 H 1.09005 * 109.47262 * 60.00309 * 12 10 9 31 31 H 0.97000 * 120.00097 * 180.02562 * 16 15 13 32 32 H 1.08006 * 120.78429 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2932 2.3829 0.0005 5 7 1.8782 3.5580 0.0010 6 6 3.2019 3.6796 0.0006 7 6 3.8129 5.0235 0.0017 8 8 5.0221 5.1411 0.0018 9 8 3.0295 6.1197 0.0028 10 6 3.6986 7.4083 0.0045 11 1 4.6561 7.3212 -0.5092 12 6 3.9332 7.8592 1.4476 13 6 2.8384 8.4220 -0.7050 14 1 1.8843 8.1272 -1.1165 15 6 3.2698 9.7256 -0.8298 16 7 4.4318 10.0845 -0.3292 17 14 2.2032 10.9823 -1.7086 18 1 1.2998 11.6369 -0.7286 19 1 3.0687 12.0073 -2.3454 20 1 1.3932 10.3018 -2.7508 21 6 4.0209 2.5469 0.0000 22 9 5.3659 2.6740 -0.0056 23 6 3.4332 1.2907 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2147 2.3248 0.0005 28 1 4.4359 8.8264 1.4489 29 1 2.9757 7.9464 1.9612 30 1 4.5554 7.1260 1.9608 31 1 4.7352 11.0017 -0.4166 32 1 4.0394 0.3968 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:49 Heat of formation + Delta-G solvation = -149.097963 kcal Electronic energy + Delta-G solvation = -20055.669771 eV Core-core repulsion = 16510.062745 eV Total energy + Delta-G solvation = -3545.607025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.28553 -42.02464 -41.06885 -39.20855 -37.62665 -35.34840 -33.62480 -32.21778 -31.36339 -28.54475 -27.48076 -26.26801 -24.68543 -23.47278 -21.89767 -19.74067 -19.54427 -19.05628 -18.29166 -17.75519 -17.56484 -17.41479 -16.78774 -16.59938 -16.46953 -15.96138 -15.52239 -14.87409 -14.57870 -14.41391 -14.19312 -14.05063 -13.81779 -13.23665 -13.03471 -12.90402 -12.80752 -12.53074 -12.41623 -12.16598 -11.78769 -11.61709 -11.03987 -10.89645 -10.81799 -10.60804 -9.82474 -8.29161 -6.46338 -0.81054 -0.22910 1.27736 1.41385 1.45003 1.54566 1.65547 1.88136 2.38241 2.39596 2.76724 3.00805 3.02250 3.28087 3.62085 3.64308 3.96825 4.32431 4.41809 4.45083 4.50079 4.65333 4.75777 4.78798 4.83665 5.01957 5.10884 5.45123 5.57436 5.82078 5.92080 6.00359 6.36152 6.57944 6.85266 7.24492 8.79132 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.004494 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.875421 B = 6229.173526 C = 6943.952261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.299 6.299 3 C 0.160 3.840 4 C 0.018 3.982 5 N -0.393 5.393 6 C -0.009 4.009 7 C 0.503 3.497 8 O -0.535 6.535 9 O -0.339 6.339 10 C 0.213 3.787 11 H 0.010 0.990 12 C -0.141 4.141 13 C -0.548 4.548 14 H 0.067 0.933 15 C 0.017 3.983 16 N -0.917 5.917 17 Si 0.987 3.013 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.266 1.266 21 C 0.151 3.849 22 F -0.112 7.112 23 C -0.152 4.152 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.133 0.867 27 H 0.214 0.786 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.022 0.978 31 H 0.272 0.728 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -21.590 1.017 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.208 6.208 3 C 0.109 3.891 4 C -0.147 4.147 5 N -0.104 5.104 6 C -0.143 4.143 7 C 0.347 3.653 8 O -0.426 6.426 9 O -0.254 6.254 10 C 0.160 3.840 11 H 0.027 0.973 12 C -0.199 4.199 13 C -0.586 4.586 14 H 0.085 0.915 15 C -0.183 4.183 16 N -0.555 5.555 17 Si 0.810 3.190 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.190 1.190 21 C 0.128 3.872 22 F -0.090 7.090 23 C -0.178 4.178 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.151 0.849 27 H 0.230 0.770 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.685 -20.762 1.043 22.933 hybrid contribution 0.751 0.401 -0.279 0.896 sum -8.934 -20.360 0.765 22.247 Atomic orbital electron populations 1.23741 0.74394 1.07184 1.03721 1.86101 1.24964 1.23766 1.86014 1.20053 0.91727 0.86759 0.90515 1.23838 1.02996 0.85188 1.02678 1.67583 1.08412 1.28746 1.05663 1.19953 0.90799 0.89938 1.13620 1.21119 0.84955 0.86345 0.72842 1.90814 1.16089 1.87878 1.47829 1.86639 1.41243 1.16013 1.81492 1.20508 0.92758 0.75532 0.95238 0.97264 1.21986 0.99987 1.02054 0.95841 1.21257 1.05550 0.93991 1.37757 0.91525 1.25864 0.96722 0.99807 0.95901 1.70023 1.20663 1.19530 1.45299 0.85124 0.78038 0.77318 0.78557 1.18988 1.20085 1.19023 1.18368 0.77898 0.93280 0.97651 1.91610 1.28296 1.96584 1.92556 1.20973 0.93738 0.96585 1.06515 0.90275 0.90346 0.84911 0.77016 0.89649 0.93485 0.95921 0.91876 0.78671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.82 113.37 1.11 1.12 16 2 O -0.30 -3.62 10.50 -90.37 -0.95 -4.57 16 3 C 0.16 2.83 6.72 22.74 0.15 2.98 16 4 C 0.02 0.37 10.21 85.05 0.87 1.24 16 5 N -0.39 -12.92 10.10 -184.43 -1.86 -14.78 16 6 C -0.01 -0.32 6.75 41.83 0.28 -0.04 16 7 C 0.50 24.71 7.91 70.30 0.56 25.26 16 8 O -0.54 -28.73 14.56 19.87 0.29 -28.44 16 9 O -0.34 -18.32 9.67 -56.47 -0.55 -18.87 16 10 C 0.21 12.53 2.56 29.85 0.08 12.61 16 11 H 0.01 0.62 7.16 -2.38 -0.02 0.60 16 12 C -0.14 -7.72 9.33 71.98 0.67 -7.05 16 13 C -0.55 -32.68 8.90 25.60 0.23 -32.45 16 14 H 0.07 3.91 7.81 -2.91 -0.02 3.89 16 15 C 0.02 0.95 5.30 84.65 0.45 1.40 16 16 N -0.92 -54.13 11.32 21.45 0.24 -53.89 16 17 Si 0.99 44.01 29.54 68.60 2.03 46.04 16 18 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.15 4.68 7.31 22.75 0.17 4.85 16 22 F -0.11 -3.95 15.54 44.97 0.70 -3.25 16 23 C -0.15 -3.15 10.10 22.57 0.23 -2.93 16 24 H 0.08 0.17 7.67 -2.39 -0.02 0.16 16 25 H 0.08 0.19 7.67 -2.39 -0.02 0.17 16 26 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.21 2.48 6.31 -2.91 -0.02 2.46 16 28 H 0.08 4.92 6.07 -2.39 -0.01 4.90 16 29 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -76.62 290.95 5.85 -70.77 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: 1.16 Total: -0.01 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.79 Total: 7.00 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -1.62 Total: -68.67 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -1.21 Total: -51.88 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.70 Total: -3.25 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -76.62 5.85 -70.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.328 kcal (2) G-P(sol) polarization free energy of solvation -76.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds