Wall clock time and date at job start Mon Mar 30 2020 01:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34899 * 117.00287 * 2 1 4 4 O 1.21630 * 119.99552 * 359.97438 * 3 2 1 5 5 C 1.46387 * 120.00207 * 179.97438 * 3 2 1 6 6 S 1.75832 * 125.46686 * 0.14428 * 5 3 2 7 7 C 1.70610 * 91.56659 * 180.20923 * 6 5 3 8 8 C 1.33859 * 110.96231 * 359.80550 * 7 6 5 9 9 C 1.36754 * 125.46231 * 180.02562 * 5 3 2 10 10 C 1.50703 * 123.35640 * 359.97438 * 9 5 3 11 11 N 1.46899 * 109.47107 * 79.72983 * 10 9 5 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47092 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99873 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00054 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00303 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99645 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47069 * 60.00160 * 18 16 14 20 20 H 1.48500 * 109.46785 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47146 * 299.99864 * 18 16 14 22 22 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47149 * 300.00106 * 1 2 3 24 24 H 1.09005 * 109.47125 * 59.99730 * 1 2 3 25 25 H 1.08005 * 124.51985 * 179.85165 * 7 6 5 26 26 H 1.07998 * 122.44451 * 180.02562 * 8 7 6 27 27 H 1.09002 * 109.47152 * 319.73071 * 10 9 5 28 28 H 1.09001 * 109.46980 * 199.73171 * 10 9 5 29 29 H 1.00902 * 111.00582 * 303.95889 * 11 10 9 30 30 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 31 31 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 32 32 H 1.09005 * 109.47424 * 300.00229 * 13 12 11 33 33 H 1.09004 * 109.47266 * 59.99979 * 13 12 11 34 34 H 0.96998 * 120.00316 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4020 2.2220 -0.0005 5 6 3.5263 1.2785 0.0006 6 16 4.6201 -0.0982 -0.0023 7 6 5.9844 0.9261 0.0066 8 6 5.6169 2.2133 0.0071 9 6 4.2604 2.4324 0.0011 10 6 3.6431 3.8072 0.0007 11 7 3.2162 4.1527 1.3631 12 6 2.6088 5.4898 1.4014 13 6 2.1785 5.8136 2.8334 14 6 1.5549 7.1850 2.8726 15 1 1.4732 7.7671 1.9665 16 6 1.0886 7.6965 4.0650 17 7 1.1875 6.9875 5.1682 18 14 0.3149 9.3961 4.1133 19 1 -0.8724 9.4250 3.2218 20 1 -0.1016 9.7110 5.5035 21 1 1.3041 10.4035 3.6532 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 7.0082 0.5820 0.0106 26 1 6.3342 3.0207 0.0119 27 1 2.7794 3.8174 -0.6643 28 1 4.3770 4.5348 -0.3457 29 1 2.5844 3.4575 1.7315 30 1 3.3358 6.2288 1.0649 31 1 1.7381 5.5120 0.7460 32 1 1.4516 5.0745 3.1704 33 1 3.0496 5.7914 3.4884 34 1 0.8592 7.3472 6.0070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893515699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:02 Heat of formation + Delta-G solvation = -57.632415 kcal Electronic energy + Delta-G solvation = -17864.134975 eV Core-core repulsion = 14888.707370 eV Total energy + Delta-G solvation = -2975.427605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44707 -38.47848 -36.31659 -35.37683 -32.83801 -30.75020 -29.53572 -27.76032 -26.25779 -24.02988 -22.51889 -22.08339 -20.49032 -19.00305 -18.50911 -16.81438 -16.45226 -16.24709 -15.90904 -15.08825 -14.96102 -14.38536 -14.17737 -13.53076 -13.38659 -13.09774 -12.94112 -12.69101 -12.19374 -12.14831 -11.92204 -11.73540 -11.06691 -10.91872 -10.87726 -10.80399 -10.56777 -10.47365 -9.88532 -9.35229 -9.12773 -8.99627 -8.58555 -8.28323 -7.68938 -5.93064 -3.95259 0.27353 1.34297 1.76912 2.16649 2.57503 2.86128 3.38003 3.41657 3.44559 4.49993 4.70696 4.76219 5.00798 5.06455 5.10106 5.10922 5.29716 5.42527 5.42680 5.62453 5.80651 5.90153 6.11626 6.23131 6.40028 6.44320 6.57340 7.08029 7.54852 7.64001 7.82422 7.90314 8.05367 8.16671 8.51386 9.11742 9.67806 11.18515 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.004141 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.936735 B = 6759.460324 C = 7504.745976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.536 3.464 4 O -0.485 6.485 5 C -0.268 4.268 6 S 0.228 5.772 7 C -0.228 4.228 8 C -0.136 4.136 9 C 0.009 3.991 10 C 0.104 3.896 11 N -0.679 5.679 12 C 0.068 3.932 13 C 0.026 3.974 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.102 0.898 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.171 0.829 26 H 0.150 0.850 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.338 0.662 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.024 0.976 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.466 -17.737 -12.850 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.379 3.621 4 O -0.374 6.374 5 C -0.387 4.387 6 S 0.497 5.503 7 C -0.366 4.366 8 C -0.167 4.167 9 C -0.007 4.007 10 C -0.027 4.027 11 N -0.310 5.310 12 C -0.060 4.060 13 C -0.011 4.011 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.120 0.880 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.188 0.812 26 H 0.168 0.832 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.633 -18.821 -12.478 23.536 hybrid contribution -1.145 2.340 -0.250 2.617 sum 5.488 -16.481 -12.729 21.535 Atomic orbital electron populations 1.23292 0.75504 1.03667 1.03065 1.86547 1.23926 1.32334 1.84913 1.19647 0.87102 0.81868 0.73445 1.90949 1.65750 1.35436 1.45235 1.23327 0.93969 0.98310 1.23073 1.83056 0.93027 1.06904 1.67279 1.25443 1.04839 0.98341 1.07969 1.19901 0.95149 0.97035 1.04648 1.19638 0.92676 0.95164 0.93256 1.20739 0.99011 0.89875 0.93073 1.60798 1.46775 1.05648 1.17752 1.22149 0.95668 0.87295 1.00928 1.19050 0.96461 0.95968 0.89617 1.21151 1.39146 1.01478 0.94069 0.92794 1.24996 0.96106 0.97549 0.95695 1.69965 1.47011 1.37400 0.98997 0.86649 0.79714 0.84664 0.76899 1.20313 1.21300 1.20234 0.88008 0.91366 0.91767 0.81158 0.83244 0.92818 0.90293 0.84391 0.92394 0.96322 0.96889 0.95723 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.44 16 2 O -0.36 -4.56 10.42 -41.04 -0.43 -4.99 16 3 C 0.54 8.05 7.92 34.01 0.27 8.32 16 4 O -0.49 -8.65 13.26 -19.37 -0.26 -8.90 16 5 C -0.27 -3.69 6.45 -36.84 -0.24 -3.93 16 6 S 0.23 2.29 22.92 -107.50 -2.46 -0.18 16 7 C -0.23 -2.15 10.92 29.19 0.32 -1.83 16 8 C -0.14 -1.57 9.95 -41.42 -0.41 -1.99 16 9 C 0.01 0.13 5.42 -105.46 -0.57 -0.45 16 10 C 0.10 1.71 5.13 -4.98 -0.03 1.69 16 11 N -0.68 -13.59 6.48 -115.05 -0.75 -14.34 16 12 C 0.07 1.55 5.62 -3.82 -0.02 1.53 16 13 C 0.03 0.73 5.23 -27.89 -0.15 0.59 16 14 C -0.52 -15.36 9.11 -34.44 -0.31 -15.68 16 15 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 18 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 26 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.05 0.94 6.67 -51.93 -0.35 0.59 16 28 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.34 7.08 7.65 -39.29 -0.30 6.78 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 310.58 15.07 4.68 4.68 Total: -1.00 -33.38 310.58 -8.08 -41.46 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.41 Total: 0.74 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -0.17 Total: -8.69 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.01 Total: -41.38 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.68 Total: -13.89 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.46 Total: -0.18 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.38 -8.08 -41.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893515699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.168 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds