Wall clock time and date at job start Mon Mar 30 2020 01:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 S 1.81396 * 109.47349 * 349.23464 * 3 2 1 5 5 C 1.81405 * 103.00139 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47226 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99821 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00036 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64711 * 359.97438 * 8 6 5 10 10 C 1.54317 * 107.27020 * 178.98608 * 9 8 6 11 11 C 1.55155 * 102.94318 * 337.80321 * 10 9 8 12 12 O 1.42901 * 111.00611 * 277.39205 * 11 10 9 13 13 C 1.50702 * 111.00474 * 153.57580 * 11 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.72219 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.47419 * 125.64618 * 180.02562 * 8 6 5 22 22 H 4.62821 * 6.06351 * 179.97438 * 4 1 2 23 23 H 1.09002 * 109.47419 * 229.23409 * 3 2 1 24 24 H 1.09006 * 109.47210 * 109.23935 * 3 2 1 25 25 H 1.08998 * 109.46739 * 60.00061 * 5 4 3 26 26 H 1.08997 * 109.46876 * 299.99991 * 5 4 3 27 27 H 1.08993 * 109.88504 * 59.56520 * 9 8 6 28 28 H 1.09000 * 109.88155 * 298.40015 * 9 8 6 29 29 H 1.09001 * 110.72200 * 219.44351 * 10 9 8 30 30 H 1.09002 * 110.72350 * 96.16683 * 10 9 8 31 31 H 0.96705 * 114.00067 * 176.82062 * 12 11 10 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 33 33 H 1.08997 * 110.36770 * 85.25016 * 21 8 6 34 34 H 1.09000 * 110.37080 * 322.91714 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2515 -1.6792 0.3194 5 6 5.0539 -1.4776 0.2805 6 6 5.7138 -2.8087 0.5329 7 8 5.0350 -3.7962 0.7201 8 7 7.0582 -2.9020 0.5495 9 6 7.9969 -1.7906 0.3370 10 6 9.4234 -2.3636 0.4715 11 6 9.2036 -3.6495 1.3116 12 8 9.1375 -3.3451 2.7062 13 6 10.2803 -4.6667 1.0340 14 1 11.0649 -4.4432 0.3263 15 6 10.2673 -5.8803 1.6883 16 7 9.3121 -6.1524 2.5504 17 14 11.6062 -7.1381 1.3500 18 1 12.7352 -6.9245 2.2907 19 1 11.0589 -8.5060 1.5362 20 1 12.0891 -6.9840 -0.0458 21 6 7.8310 -4.1355 0.7828 22 1 -1.0497 -0.0004 0.0003 23 1 3.0091 0.6719 0.7783 24 1 3.0092 0.3395 -0.9703 25 1 5.3569 -0.7694 1.0516 26 1 5.3564 -1.1021 -0.6970 27 1 7.8347 -1.0193 1.0898 28 1 7.8576 -1.3733 -0.6602 29 1 10.0717 -1.6643 0.9995 30 1 9.8346 -2.6084 -0.5078 31 1 8.9526 -4.1106 3.2676 32 1 9.3027 -7.0064 3.0104 33 1 7.9570 -4.6862 -0.1494 34 1 7.3362 -4.7580 1.5283 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898086025.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:08 Heat of formation + Delta-G solvation = -48.440228 kcal Electronic energy + Delta-G solvation = -18026.484639 eV Core-core repulsion = 15051.455637 eV Total energy + Delta-G solvation = -2975.029002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00736 -38.92962 -36.09991 -34.93407 -34.16505 -32.36451 -30.89359 -29.58312 -29.23051 -26.79109 -24.18470 -21.48781 -20.57414 -19.34027 -19.13517 -18.13938 -17.45196 -17.07717 -17.01687 -16.37405 -15.85938 -15.57858 -15.29694 -15.04178 -14.89270 -14.65595 -14.14583 -13.79322 -13.59850 -13.45611 -13.22119 -12.85793 -12.53239 -12.30443 -12.23426 -12.08451 -11.65864 -11.30969 -11.28073 -11.07785 -10.75874 -10.64969 -10.32155 -9.51961 -8.77552 -8.26978 -6.43460 0.13672 1.38118 1.41591 1.43693 1.53198 1.54245 1.83171 2.06513 2.27188 2.38192 2.99529 3.35668 3.49223 3.80406 4.01066 4.13475 4.20777 4.26579 4.27594 4.38895 4.40018 4.68521 4.73003 5.01654 5.03189 5.09647 5.28080 5.40209 5.45125 5.75799 6.04110 6.57316 6.59901 6.66365 7.08857 7.29083 7.37307 8.78703 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.045451 B = 0.003819 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.901673 B = 7329.989795 C = 7638.761841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.223 4.223 3 C 0.020 3.980 4 S -0.244 6.244 5 C -0.099 4.099 6 C 0.525 3.475 7 O -0.585 6.585 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.113 4.113 11 C 0.231 3.769 12 O -0.590 6.590 13 C -0.554 4.554 14 H 0.071 0.929 15 C 0.023 3.977 16 N -0.919 5.919 17 Si 0.965 3.035 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.106 3.894 22 H 0.254 0.746 23 H 0.124 0.876 24 H 0.127 0.873 25 H 0.137 0.863 26 H 0.146 0.854 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.376 0.624 32 H 0.270 0.730 33 H 0.046 0.954 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 14.999 -6.591 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.224 4.224 3 C -0.126 4.126 4 S -0.016 6.016 5 C -0.250 4.250 6 C 0.314 3.686 7 O -0.466 6.466 8 N -0.341 5.341 9 C -0.019 4.019 10 C -0.151 4.151 11 C 0.190 3.810 12 O -0.399 6.399 13 C -0.593 4.593 14 H 0.090 0.910 15 C -0.177 4.177 16 N -0.559 5.559 17 Si 0.791 3.209 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.188 1.188 21 C -0.017 4.017 22 H 0.270 0.730 23 H 0.142 0.858 24 H 0.145 0.855 25 H 0.155 0.845 26 H 0.164 0.836 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.227 0.773 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.054 14.043 -6.427 17.902 hybrid contribution 1.042 -0.866 0.233 1.375 sum -8.012 13.176 -6.193 16.618 Atomic orbital electron populations 1.25778 0.96738 0.96771 0.98828 1.22306 0.94036 1.03412 1.02678 1.20300 0.88633 0.95958 1.07717 1.88208 1.03495 1.14498 1.95360 1.23411 0.94285 0.97675 1.09580 1.20091 0.81042 0.90552 0.76930 1.90706 1.63357 1.40503 1.52075 1.48713 1.04583 1.12049 1.68803 1.22296 0.88263 0.88584 1.02723 1.22642 0.95775 0.96522 1.00176 1.19882 0.89280 0.92350 0.79476 1.86051 1.94688 1.39763 1.19357 1.21863 1.11489 1.00421 1.25495 0.91041 1.25862 0.97639 1.00060 0.94176 1.69690 1.33622 1.24880 1.27732 0.85437 0.78923 0.77587 0.78989 1.19972 1.21349 1.18806 1.22871 0.93987 0.86208 0.98672 0.72999 0.85816 0.85519 0.84466 0.83648 0.89904 0.87953 0.89496 0.89152 0.77344 0.92091 0.93530 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 19.25 74.32 1.43 -1.25 16 2 C -0.22 -4.54 13.35 31.12 0.42 -4.12 16 3 C 0.02 0.36 6.42 70.18 0.45 0.81 16 4 S -0.24 -6.90 20.83 -56.49 -1.18 -8.08 16 5 C -0.10 -2.45 5.62 71.24 0.40 -2.05 16 6 C 0.53 20.11 7.87 87.66 0.69 20.80 16 7 O -0.59 -28.63 16.12 -3.04 -0.05 -28.68 16 8 N -0.61 -23.52 3.33 -811.82 -2.70 -26.22 16 9 C 0.10 2.97 6.49 86.73 0.56 3.53 16 10 C -0.11 -3.99 6.13 31.78 0.19 -3.80 16 11 C 0.23 10.89 0.88 -10.15 -0.01 10.89 16 12 O -0.59 -30.12 13.16 -148.98 -1.96 -32.08 16 13 C -0.55 -28.38 8.25 25.60 0.21 -28.17 16 14 H 0.07 3.50 7.76 -2.91 -0.02 3.48 16 15 C 0.02 1.20 5.31 84.66 0.45 1.65 16 16 N -0.92 -50.42 10.74 21.45 0.23 -50.19 16 17 Si 0.97 41.63 29.54 68.60 2.03 43.65 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 C 0.11 5.12 5.63 86.86 0.49 5.61 16 22 H 0.25 2.06 7.80 -4.43 -0.03 2.02 16 23 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.09 2.93 8.01 -2.39 -0.02 2.91 16 31 H 0.38 20.57 7.00 -74.05 -0.52 20.05 16 32 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 33 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 34 H 0.04 2.13 7.65 -2.39 -0.02 2.12 16 Total: -1.00 -71.12 311.78 2.24 -68.88 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.58 Total: 28.82 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.28 Total: 3.89 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -2.47 Total: -76.41 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -2.01 Total: -60.76 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: -6.90 SS G_CDS: -1.18 Total: -8.08 kcal Total: -71.12 2.24 -68.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898086025.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.439 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds