Wall clock time and date at job start Mon Mar 30 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35703 * 117.00415 * 2 1 4 4 C 1.41926 * 126.88422 * 180.02562 * 3 2 1 5 5 C 1.35275 * 103.96351 * 179.75438 * 4 3 2 6 6 C 1.50691 * 126.71035 * 180.23637 * 5 4 3 7 7 S 1.81407 * 109.47212 * 90.00378 * 6 5 4 8 8 C 1.81400 * 103.00196 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46940 * 179.97438 * 8 7 6 10 10 C 1.50696 * 115.55164 * 65.33177 * 9 8 7 11 11 H 1.08001 * 120.00435 * 265.65534 * 10 9 8 12 12 C 1.37878 * 119.99746 * 85.65116 * 10 9 8 13 13 N 1.31512 * 120.00225 * 353.69867 * 12 10 9 14 14 Si 1.86803 * 119.99813 * 173.69599 * 12 10 9 15 15 H 1.48503 * 109.47149 * 60.00034 * 14 12 10 16 16 H 1.48503 * 109.47266 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47148 * 300.00118 * 14 12 10 18 18 C 1.53006 * 117.49858 * 279.65955 * 9 8 7 19 19 C 1.52998 * 117.49574 * 211.00293 * 9 8 7 20 20 O 1.34088 * 106.57870 * 0.24096 * 5 4 3 21 21 N 1.20909 * 111.71812 * 359.97438 * 20 5 4 22 22 H 1.09003 * 109.46727 * 299.99773 * 1 2 3 23 23 H 1.08990 * 109.46936 * 60.00362 * 1 2 3 24 24 H 1.09002 * 109.46687 * 180.02562 * 1 2 3 25 25 H 1.07998 * 128.01808 * 0.02562 * 4 3 2 26 26 H 1.08997 * 109.47592 * 210.00042 * 6 5 4 27 27 H 1.09002 * 109.47362 * 330.00296 * 6 5 4 28 28 H 1.09002 * 109.47135 * 299.99789 * 8 7 6 29 29 H 1.09005 * 109.46953 * 59.99826 * 8 7 6 30 30 H 0.97006 * 119.99558 * 174.96925 * 13 12 10 31 31 H 1.08996 * 117.49597 * 0.02562 * 18 9 8 32 32 H 1.09001 * 117.49270 * 145.02273 * 18 9 8 33 33 H 1.09003 * 117.49833 * 214.98073 * 19 9 8 34 34 H 1.09002 * 117.50465 * 359.97349 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4434 1.4526 -0.0005 5 6 3.5397 2.8019 -0.0059 6 6 4.8088 3.6144 -0.0137 7 16 5.3116 3.9341 -1.7272 8 6 6.8308 4.9060 -1.5321 9 6 7.3896 5.2612 -2.9114 10 6 6.5306 6.1770 -3.7446 11 1 5.8370 5.7629 -4.4615 12 6 6.6300 7.5437 -3.5916 13 7 7.3808 8.0455 -2.6356 14 14 5.6982 8.6825 -4.7424 15 1 4.2418 8.4142 -4.6323 16 1 5.9715 10.0940 -4.3704 17 1 6.1410 8.4448 -6.1397 18 6 8.1956 4.1873 -3.6451 19 6 8.9073 5.4018 -3.0439 20 8 2.2851 3.2751 -0.0028 21 7 1.4701 2.3819 0.0031 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 4.2447 0.7285 -0.0014 26 1 4.6370 4.5617 0.4972 27 1 5.5967 3.0626 0.4992 28 1 6.6088 5.8210 -0.9830 29 1 7.5679 4.3215 -0.9813 30 1 7.5092 9.0050 -2.5729 31 1 8.3273 3.2277 -3.1452 32 1 8.1047 4.1436 -4.7304 33 1 9.2845 6.1566 -3.7339 34 1 9.5078 5.2417 -2.1483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902526188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:36 Heat of formation + Delta-G solvation = 51.130884 kcal Electronic energy + Delta-G solvation = -17594.509733 eV Core-core repulsion = 14623.798458 eV Total energy + Delta-G solvation = -2970.711275 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.85603 -38.90596 -36.61020 -33.82477 -32.49342 -31.95131 -28.39005 -27.75391 -27.16747 -25.30452 -23.38990 -21.35111 -21.14835 -19.31900 -17.90257 -17.81620 -16.75693 -16.22757 -15.64748 -15.33786 -15.04599 -14.64196 -14.08512 -13.97973 -13.81798 -13.38330 -12.88167 -12.71336 -12.33863 -11.98688 -11.89797 -11.47235 -11.15155 -11.02123 -10.88137 -10.50213 -10.27546 -9.78593 -9.70682 -9.37734 -9.06339 -8.85763 -8.45034 -8.06228 -6.95208 -6.06292 -4.11755 1.16585 2.14435 2.54173 2.67888 3.08393 3.33368 3.35040 3.37390 3.41808 4.18051 4.42076 4.72930 4.89774 4.93812 4.96231 5.14595 5.22857 5.27257 5.34559 5.44095 5.62309 5.80541 5.90139 6.15260 6.34414 6.47590 6.69224 6.76358 6.88377 7.03205 7.35773 7.45278 7.87443 8.23091 8.36736 8.90222 9.55093 11.02700 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.004250 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.253002 B = 6586.587807 C = 7158.910618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.224 4.224 5 C 0.030 3.970 6 C -0.036 4.036 7 S -0.216 6.216 8 C -0.029 4.029 9 C 0.055 3.945 10 C -0.487 4.487 11 H 0.062 0.938 12 C 0.074 3.926 13 N -0.882 5.882 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.205 4.205 19 C -0.146 4.146 20 O 0.106 5.894 21 N -0.410 5.410 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.179 0.821 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 -11.854 7.385 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.248 4.248 5 C -0.034 4.034 6 C -0.184 4.184 7 S 0.013 5.987 8 C -0.178 4.178 9 C 0.053 3.947 10 C -0.525 4.525 11 H 0.080 0.920 12 C -0.130 4.130 13 N -0.518 5.518 14 Si 0.715 3.285 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.242 4.242 19 C -0.186 4.186 20 O 0.045 5.955 21 N -0.136 5.136 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.122 0.878 25 H 0.197 0.803 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.072 -11.857 6.609 15.793 hybrid contribution 0.640 0.709 0.538 1.096 sum -7.432 -11.148 7.146 15.185 Atomic orbital electron populations 1.23040 0.77085 1.03849 1.02347 1.86174 1.22392 1.21041 1.89549 1.21943 0.90889 0.85647 1.00628 1.21697 0.94228 0.95425 1.13477 1.23426 0.87504 0.92647 0.99870 1.21793 0.91938 1.02189 1.02504 1.87357 1.36752 1.70776 1.03800 1.23209 0.92538 0.99408 1.02603 1.18424 0.90460 0.95615 0.90233 1.20354 1.21782 0.89831 1.20523 0.91997 1.24927 0.95285 0.98029 0.94710 1.69992 1.39038 1.12499 1.30304 0.86719 0.80764 0.79635 0.81347 1.19926 1.21344 1.20279 1.23035 1.09166 0.92688 0.99354 1.22581 0.96440 0.98735 1.00875 1.84827 1.12038 1.29770 1.68831 1.74118 1.15750 0.96672 1.27100 0.92385 0.92232 0.87824 0.80326 0.87685 0.87299 0.89411 0.93006 0.92977 0.91337 0.90247 0.89744 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.74 101.05 1.08 1.38 16 2 O -0.28 -3.68 10.57 -18.81 -0.20 -3.88 16 3 C 0.21 3.00 8.01 -16.65 -0.13 2.87 16 4 C -0.22 -3.01 11.10 -39.23 -0.44 -3.44 16 5 C 0.03 0.43 6.74 -35.37 -0.24 0.20 16 6 C -0.04 -0.51 6.50 36.00 0.23 -0.27 16 7 S -0.22 -4.08 21.41 -107.50 -2.30 -6.38 16 8 C -0.03 -0.61 5.80 37.16 0.22 -0.39 16 9 C 0.05 1.28 1.34 -155.66 -0.21 1.07 16 10 C -0.49 -12.89 8.49 -34.44 -0.29 -13.19 16 11 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 12 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 13 N -0.88 -24.02 12.90 55.43 0.71 -23.31 16 14 Si 0.89 20.94 29.55 -169.99 -5.02 15.92 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.20 -4.31 9.96 -26.69 -0.27 -4.57 16 19 C -0.15 -3.25 9.40 -26.70 -0.25 -3.51 16 20 O 0.11 1.69 11.19 17.05 0.19 1.88 16 21 N -0.41 -6.44 11.54 30.38 0.35 -6.09 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 26 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 27 H 0.11 1.24 8.14 -51.92 -0.42 0.81 16 28 H 0.09 1.98 8.14 -51.92 -0.42 1.55 16 29 H 0.05 0.95 8.09 -51.92 -0.42 0.53 16 30 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 315.64 15.07 4.76 4.76 Total: -1.00 -28.85 315.64 -6.51 -35.36 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.62 Total: -0.27 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -0.39 Total: -18.00 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 1.07 Total: -29.40 kcal Atomic # 8 Polarization: -1.99 SS G_CDS: -0.01 Total: -2.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -2.30 Total: -6.38 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.85 -6.51 -35.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902526188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.491 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds