Wall clock time and date at job start Mon Mar 30 2020 00:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46972 * 2 1 4 4 C 1.50697 * 109.46760 * 185.52581 * 3 2 1 5 5 C 1.38258 * 120.00131 * 270.18275 * 4 3 2 6 6 C 1.38217 * 120.00138 * 179.74745 * 5 4 3 7 7 C 1.38255 * 119.99561 * 0.54623 * 6 5 4 8 8 C 1.38216 * 120.00389 * 359.70826 * 7 6 5 9 9 C 1.38211 * 119.99961 * 90.45787 * 4 3 2 10 10 S 1.76196 * 119.99928 * 359.97438 * 9 4 3 11 11 O 1.42105 * 106.40054 * 177.74054 * 10 9 4 12 12 O 1.42097 * 106.40685 * 310.65748 * 10 9 4 13 13 N 1.65605 * 107.21775 * 64.20259 * 10 9 4 14 14 C 1.36940 * 120.00090 * 65.16717 * 13 10 9 15 15 H 1.08000 * 119.99885 * 4.97343 * 14 13 10 16 16 C 1.38810 * 119.99819 * 184.97322 * 14 13 10 17 17 N 1.31611 * 119.99902 * 184.84083 * 16 14 13 18 18 Si 1.86793 * 119.99949 * 4.84454 * 16 14 13 19 19 H 1.48505 * 109.47480 * 90.00185 * 18 16 14 20 20 H 1.48502 * 109.46978 * 209.99908 * 18 16 14 21 21 H 1.48498 * 109.47469 * 329.99734 * 18 16 14 22 22 H 1.08997 * 109.47437 * 55.02584 * 1 2 3 23 23 H 1.08997 * 109.47243 * 175.02623 * 1 2 3 24 24 H 1.09006 * 109.47630 * 295.02610 * 1 2 3 25 25 H 1.09005 * 109.46924 * 119.99920 * 2 1 3 26 26 H 1.08993 * 109.47020 * 239.99688 * 2 1 3 27 27 H 1.09000 * 109.47129 * 305.52674 * 3 2 1 28 28 H 1.09000 * 109.46724 * 65.52910 * 3 2 1 29 29 H 1.08005 * 120.00099 * 359.97438 * 5 4 3 30 30 H 1.07994 * 120.00218 * 180.26928 * 6 5 4 31 31 H 1.08006 * 119.99591 * 179.72506 * 7 6 5 32 32 H 1.08000 * 120.00293 * 180.02562 * 8 7 6 33 33 H 0.96996 * 119.99458 * 245.17088 * 13 10 9 34 34 H 0.96999 * 120.00274 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5407 1.4447 -0.1368 5 6 4.3379 1.4034 0.9921 6 6 5.7143 1.4001 0.8664 7 6 6.2940 1.4495 -0.3878 8 6 5.4971 1.4961 -1.5162 9 6 4.1202 1.4937 -1.3906 10 16 3.1044 1.5529 -2.8290 11 8 3.9861 1.6494 -3.9392 12 8 2.1454 0.5140 -2.6862 13 7 2.2619 2.9776 -2.7758 14 6 2.9282 4.1708 -2.8628 15 1 3.9924 4.1828 -3.0465 16 6 2.2359 5.3648 -2.7148 17 7 2.8564 6.5117 -2.8926 18 14 0.4235 5.3436 -2.2631 19 1 0.2812 5.3658 -0.7851 20 1 -0.2450 6.5364 -2.8426 21 1 -0.2069 4.1120 -2.8027 22 1 -0.3634 0.5890 -0.8420 23 1 -0.3633 -1.0238 -0.0891 24 1 -0.3634 0.4347 0.9312 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.5980 1.9842 -0.8364 28 1 1.7597 1.9269 0.9354 29 1 3.8850 1.3701 1.9720 30 1 6.3370 1.3635 1.7480 31 1 7.3696 1.4514 -0.4858 32 1 5.9500 1.5342 -2.4959 33 1 1.2964 2.9669 -2.6829 34 1 2.3726 7.3460 -2.7896 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903094244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:14 Heat of formation + Delta-G solvation = -56.571541 kcal Electronic energy + Delta-G solvation = -19304.090531 eV Core-core repulsion = 16328.708928 eV Total energy + Delta-G solvation = -2975.381602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.04747 -36.39485 -34.99691 -34.82312 -34.39831 -31.54649 -30.82765 -30.72797 -26.19305 -24.24994 -22.73979 -22.01211 -20.59395 -18.92491 -18.27467 -17.21175 -16.43166 -15.57374 -15.30601 -14.81677 -14.35381 -14.09665 -13.81321 -13.49594 -13.34729 -13.11495 -12.67962 -12.31778 -11.96616 -11.82255 -11.53969 -11.47914 -11.15470 -11.07117 -11.00280 -10.82804 -10.64993 -10.48762 -10.38775 -10.15745 -10.03193 -9.79187 -8.87730 -8.46562 -8.42918 -6.44151 -3.93932 1.23644 1.52851 1.67301 3.07166 3.09753 3.15346 3.82574 4.06923 4.19473 4.67246 4.90622 5.03739 5.06641 5.17016 5.33237 5.39715 5.44307 5.56859 5.73168 5.80907 5.90127 6.04470 6.11532 6.16087 6.21910 6.40639 6.49749 6.57641 6.67023 6.70132 6.83501 6.89565 7.25570 7.58626 8.28012 8.89144 9.01826 10.66652 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.009599 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.193514 B = 2916.372205 C = 3399.378486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.103 4.103 4 C 0.021 3.979 5 C -0.146 4.146 6 C -0.080 4.080 7 C -0.151 4.151 8 C -0.023 4.023 9 C -0.654 4.654 10 S 2.622 3.378 11 O -0.969 6.969 12 O -0.991 6.991 13 N -0.978 5.978 14 C -0.276 4.276 15 H 0.121 0.879 16 C 0.050 3.950 17 N -0.869 5.869 18 Si 0.880 3.120 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.265 1.265 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.391 0.609 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 -8.464 7.998 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.141 4.141 4 C 0.020 3.980 5 C -0.164 4.164 6 C -0.098 4.098 7 C -0.170 4.170 8 C -0.042 4.042 9 C -0.736 4.736 10 S 2.715 3.285 11 O -0.959 6.959 12 O -0.980 6.980 13 N -0.730 5.730 14 C -0.415 4.415 15 H 0.139 0.861 16 C -0.158 4.158 17 N -0.509 5.509 18 Si 0.706 3.294 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.190 1.190 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.227 0.773 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.033 -9.059 7.368 11.677 hybrid contribution -0.807 0.621 1.161 1.545 sum -0.840 -8.438 8.529 12.027 Atomic orbital electron populations 1.21714 0.95892 1.01483 1.01326 1.21630 0.95912 0.95189 1.03247 1.20977 0.90700 0.98844 1.03564 1.19430 0.95313 0.91466 0.91824 1.21052 0.93805 1.03514 0.98042 1.21237 0.94892 0.96369 0.97325 1.21191 0.99732 1.03261 0.92841 1.20951 0.91969 0.91824 0.99488 1.31635 1.08939 1.13594 1.19388 1.06010 0.73227 0.73421 0.75838 1.93468 1.66423 1.86759 1.49299 1.93426 1.60762 1.56465 1.87397 1.52246 1.15227 1.21450 1.84121 1.19060 0.96325 0.81367 1.44766 0.86121 1.25136 0.98844 0.94833 0.97004 1.69716 1.36894 0.97468 1.46867 0.86596 0.84602 0.78559 0.79632 1.19364 1.20081 1.19044 0.92232 0.92907 0.93543 0.92822 0.88620 0.90724 0.90406 0.86052 0.86173 0.85922 0.84553 0.77300 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.12 -1.88 5.43 -26.73 -0.15 -2.03 16 3 C -0.10 -1.73 4.59 -27.88 -0.13 -1.85 16 4 C 0.02 0.37 5.13 -104.63 -0.54 -0.16 16 5 C -0.15 -2.25 9.70 -39.58 -0.38 -2.63 16 6 C -0.08 -1.15 10.05 -39.58 -0.40 -1.55 16 7 C -0.15 -2.34 10.05 -39.58 -0.40 -2.73 16 8 C -0.02 -0.42 9.55 -39.58 -0.38 -0.80 16 9 C -0.65 -12.89 5.82 -39.58 -0.23 -13.12 16 10 S 2.62 56.68 4.89 -107.50 -0.53 56.15 16 11 O -0.97 -23.56 16.64 -57.17 -0.95 -24.51 16 12 O -0.99 -21.13 14.10 -57.17 -0.81 -21.93 16 13 N -0.98 -22.19 4.36 31.50 0.14 -22.05 16 14 C -0.28 -7.09 10.12 -15.06 -0.15 -7.24 16 15 H 0.12 3.32 8.02 -52.49 -0.42 2.90 16 16 C 0.05 1.29 5.50 -17.43 -0.10 1.20 16 17 N -0.87 -23.83 13.97 55.49 0.78 -23.06 16 18 Si 0.88 19.09 27.90 -169.99 -4.74 14.35 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.37 6.31 56.52 0.36 -5.01 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 1.67 5.90 -51.93 -0.31 1.36 16 27 H 0.07 1.35 5.00 -51.93 -0.26 1.09 16 28 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 29 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.14 2.43 7.34 -52.49 -0.39 2.04 16 33 H 0.39 8.28 5.39 -34.47 -0.19 8.09 16 34 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 293.01 15.07 4.42 4.42 Total: -1.00 -29.67 293.01 -8.29 -37.96 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -4.12 Total: 11.24 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: -2.48 Total: -32.57 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.91 Total: -45.11 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -1.76 Total: -46.44 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.74 Total: 14.35 kcal Atomic # 16 Polarization: 56.68 SS G_CDS: -0.53 Total: 56.15 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.67 -8.29 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903094244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.612 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds