Wall clock time and date at job start Mon Mar 30 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46972 * 2 1 4 4 C 1.50697 * 109.46760 * 185.52581 * 3 2 1 5 5 C 1.38258 * 120.00131 * 270.18275 * 4 3 2 6 6 C 1.38217 * 120.00138 * 179.74745 * 5 4 3 7 7 C 1.38255 * 119.99561 * 0.54623 * 6 5 4 8 8 C 1.38216 * 120.00389 * 359.70826 * 7 6 5 9 9 C 1.38211 * 119.99961 * 90.45787 * 4 3 2 10 10 S 1.76196 * 119.99928 * 359.97438 * 9 4 3 11 11 O 1.42105 * 106.40054 * 177.74054 * 10 9 4 12 12 O 1.42097 * 106.40685 * 310.65748 * 10 9 4 13 13 N 1.65605 * 107.21775 * 64.20259 * 10 9 4 14 14 C 1.36940 * 120.00090 * 65.16717 * 13 10 9 15 15 H 1.08000 * 119.99885 * 4.97343 * 14 13 10 16 16 C 1.38810 * 119.99819 * 184.97322 * 14 13 10 17 17 N 1.31611 * 119.99902 * 184.84083 * 16 14 13 18 18 Si 1.86793 * 119.99949 * 4.84454 * 16 14 13 19 19 H 1.48505 * 109.47480 * 90.00185 * 18 16 14 20 20 H 1.48502 * 109.46978 * 209.99908 * 18 16 14 21 21 H 1.48498 * 109.47469 * 329.99734 * 18 16 14 22 22 H 1.08997 * 109.47437 * 55.02584 * 1 2 3 23 23 H 1.08997 * 109.47243 * 175.02623 * 1 2 3 24 24 H 1.09006 * 109.47630 * 295.02610 * 1 2 3 25 25 H 1.09005 * 109.46924 * 119.99920 * 2 1 3 26 26 H 1.08993 * 109.47020 * 239.99688 * 2 1 3 27 27 H 1.09000 * 109.47129 * 305.52674 * 3 2 1 28 28 H 1.09000 * 109.46724 * 65.52910 * 3 2 1 29 29 H 1.08005 * 120.00099 * 359.97438 * 5 4 3 30 30 H 1.07994 * 120.00218 * 180.26928 * 6 5 4 31 31 H 1.08006 * 119.99591 * 179.72506 * 7 6 5 32 32 H 1.08000 * 120.00293 * 180.02562 * 8 7 6 33 33 H 0.96996 * 119.99458 * 245.17088 * 13 10 9 34 34 H 0.96999 * 120.00274 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5407 1.4447 -0.1368 5 6 4.3379 1.4034 0.9921 6 6 5.7143 1.4001 0.8664 7 6 6.2940 1.4495 -0.3878 8 6 5.4971 1.4961 -1.5162 9 6 4.1202 1.4937 -1.3906 10 16 3.1044 1.5529 -2.8290 11 8 3.9861 1.6494 -3.9392 12 8 2.1454 0.5140 -2.6862 13 7 2.2619 2.9776 -2.7758 14 6 2.9282 4.1708 -2.8628 15 1 3.9924 4.1828 -3.0465 16 6 2.2359 5.3648 -2.7148 17 7 2.8564 6.5117 -2.8926 18 14 0.4235 5.3436 -2.2631 19 1 0.2812 5.3658 -0.7851 20 1 -0.2450 6.5364 -2.8426 21 1 -0.2069 4.1120 -2.8027 22 1 -0.3634 0.5890 -0.8420 23 1 -0.3633 -1.0238 -0.0891 24 1 -0.3634 0.4347 0.9312 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.5980 1.9842 -0.8364 28 1 1.7597 1.9269 0.9354 29 1 3.8850 1.3701 1.9720 30 1 6.3370 1.3635 1.7480 31 1 7.3696 1.4514 -0.4858 32 1 5.9500 1.5342 -2.4959 33 1 1.2964 2.9669 -2.6829 34 1 2.3726 7.3460 -2.7896 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903094244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:13 Heat of formation + Delta-G solvation = -76.417674 kcal Electronic energy + Delta-G solvation = -19304.951123 eV Core-core repulsion = 16328.708928 eV Total energy + Delta-G solvation = -2976.242195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.35935 -38.23581 -36.78311 -36.69970 -35.78990 -33.41856 -32.14250 -31.98775 -27.41294 -26.17845 -24.12965 -23.24369 -21.86228 -20.76644 -20.10226 -18.80438 -18.15123 -17.06294 -16.73347 -16.47475 -15.88652 -15.49130 -15.25667 -14.99278 -14.70909 -14.61044 -14.41891 -13.54159 -13.29895 -13.27759 -13.06914 -13.04683 -12.90839 -12.89886 -12.62625 -12.22262 -12.12981 -12.04938 -11.96620 -11.88698 -11.35008 -11.34235 -10.38080 -10.21663 -9.71422 -8.32176 -5.96626 -0.35813 -0.00558 0.38385 1.34561 1.37168 1.43509 2.27195 2.32767 2.59738 2.90530 3.12953 3.58485 3.70322 3.87823 4.05152 4.19600 4.24966 4.41278 4.51479 4.55323 4.69218 4.81696 4.90419 4.97922 5.03154 5.04213 5.21682 5.27051 5.35962 5.42837 5.50428 5.60283 5.74035 5.99526 6.33144 6.98980 7.13760 8.83478 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.009599 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.193514 B = 2916.372205 C = 3399.378486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.009 3.991 5 C -0.146 4.146 6 C -0.064 4.064 7 C -0.151 4.151 8 C -0.048 4.048 9 C -0.678 4.678 10 S 2.678 3.322 11 O -1.004 7.004 12 O -0.982 6.982 13 N -0.996 5.996 14 C -0.302 4.302 15 H 0.083 0.917 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.935 3.065 19 H -0.255 1.255 20 H -0.278 1.278 21 H -0.246 1.246 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.159 0.841 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.128 0.872 33 H 0.399 0.601 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 -10.764 11.343 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.150 4.150 4 C 0.007 3.993 5 C -0.164 4.164 6 C -0.082 4.082 7 C -0.169 4.169 8 C -0.068 4.068 9 C -0.766 4.766 10 S 2.771 3.229 11 O -0.995 6.995 12 O -0.972 6.972 13 N -0.751 5.751 14 C -0.435 4.435 15 H 0.101 0.899 16 C -0.202 4.202 17 N -0.577 5.577 18 Si 0.757 3.243 19 H -0.179 1.179 20 H -0.203 1.203 21 H -0.170 1.170 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.176 0.824 30 H 0.185 0.815 31 H 0.174 0.826 32 H 0.146 0.854 33 H 0.235 0.765 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.313 -11.255 10.650 15.498 hybrid contribution -0.510 0.900 0.238 1.061 sum -0.822 -10.355 10.888 15.048 Atomic orbital electron populations 1.21746 0.94755 1.02271 1.01855 1.21620 0.96979 0.94154 1.03154 1.21141 0.89923 0.99767 1.04196 1.19740 0.96416 0.91319 0.91812 1.21521 0.94298 1.01960 0.98622 1.21844 0.95092 0.92900 0.98346 1.21596 1.01274 1.01815 0.92262 1.21113 0.91824 0.93084 1.00757 1.30810 1.09078 1.18549 1.18195 1.02414 0.73096 0.72264 0.75096 1.93450 1.67588 1.87059 1.51397 1.93480 1.60955 1.55147 1.87576 1.51588 1.15771 1.20209 1.87549 1.18595 0.94571 0.82799 1.47515 0.89925 1.25767 1.03196 0.94127 0.97135 1.69847 1.38874 0.98080 1.50924 0.85747 0.79359 0.79070 0.80102 1.17885 1.20316 1.16984 0.93778 0.91673 0.91382 0.90330 0.91258 0.92689 0.87737 0.82357 0.81488 0.82605 0.85414 0.76464 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.37 5.43 30.60 0.17 -3.20 16 3 C -0.11 -3.47 4.59 29.85 0.14 -3.33 16 4 C 0.01 0.28 5.13 -19.87 -0.10 0.18 16 5 C -0.15 -3.79 9.70 22.27 0.22 -3.58 16 6 C -0.06 -1.50 10.05 22.27 0.22 -1.27 16 7 C -0.15 -4.13 10.05 22.27 0.22 -3.91 16 8 C -0.05 -1.73 9.55 22.27 0.21 -1.52 16 9 C -0.68 -26.23 5.82 22.27 0.13 -26.10 16 10 S 2.68 117.31 4.89 -56.49 -0.28 117.03 16 11 O -1.00 -50.52 16.64 -128.00 -2.13 -52.65 16 12 O -0.98 -41.35 14.10 -128.00 -1.80 -43.16 16 13 N -1.00 -46.42 4.36 -54.26 -0.24 -46.65 16 14 C -0.30 -16.41 10.12 84.03 0.85 -15.56 16 15 H 0.08 4.97 8.02 -2.91 -0.02 4.94 16 16 C 0.00 -0.07 5.50 84.86 0.47 0.40 16 17 N -0.93 -54.68 13.97 21.65 0.30 -54.37 16 18 Si 0.93 40.05 27.90 68.60 1.91 41.96 16 19 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.25 -9.52 6.31 99.48 0.63 -8.89 16 22 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.07 2.28 5.90 -2.39 -0.01 2.26 16 27 H 0.05 1.91 5.00 -2.39 -0.01 1.90 16 28 H 0.10 2.63 8.09 -2.39 -0.02 2.61 16 29 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.13 4.66 7.34 -2.91 -0.02 4.64 16 33 H 0.40 17.02 5.39 -96.75 -0.52 16.50 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -68.54 293.01 1.52 -67.02 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.51 Total: 31.64 kcal Atomic # 6 Polarization: -64.06 SS G_CDS: 3.24 Total: -60.82 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: 0.07 Total: -101.03 kcal Atomic # 8 Polarization: -91.87 SS G_CDS: -3.93 Total: -95.81 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.91 Total: 41.96 kcal Atomic # 16 Polarization: 117.31 SS G_CDS: -0.28 Total: 117.03 kcal Total: -68.54 1.52 -67.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903094244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.400 kcal (2) G-P(sol) polarization free energy of solvation -68.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds