Wall clock time and date at job start Mon Mar 30 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29394 * 124.70292 * 2 1 4 4 C 1.30913 * 117.46617 * 180.02562 * 3 2 1 5 5 C 1.50697 * 123.03448 * 179.97438 * 4 3 2 6 6 C 1.36767 * 113.93251 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.17715 * 180.02562 * 6 4 3 8 8 O 1.21613 * 120.00143 * 359.94784 * 7 6 4 9 9 O 1.34872 * 119.99575 * 179.97438 * 7 6 4 10 10 C 1.45203 * 117.00071 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46778 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46843 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99668 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99568 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47602 * 59.99891 * 17 15 13 19 19 H 1.48505 * 109.46974 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46968 * 299.99544 * 17 15 13 21 21 S 1.70920 * 124.70986 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.46997 * 90.00095 * 1 2 3 23 23 H 1.09000 * 109.46633 * 210.00011 * 1 2 3 24 24 H 1.09003 * 109.46993 * 329.99423 * 1 2 3 25 25 H 1.09007 * 109.47325 * 90.02322 * 5 4 3 26 26 H 1.09004 * 109.46961 * 210.02029 * 5 4 3 27 27 H 1.08996 * 109.47626 * 330.02703 * 5 4 3 28 28 H 1.09010 * 109.46269 * 299.99777 * 10 9 7 29 29 H 1.08999 * 109.47231 * 59.98836 * 10 9 7 30 30 H 1.08996 * 109.47205 * 299.99150 * 11 10 9 31 31 H 1.08994 * 109.47574 * 59.99628 * 11 10 9 32 32 H 1.08998 * 109.47246 * 299.99507 * 12 11 10 33 33 H 1.08996 * 109.47678 * 59.99780 * 12 11 10 34 34 H 0.97002 * 119.99793 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0638 0.0000 4 6 3.5424 0.8989 -0.0005 5 6 4.5165 2.0487 -0.0011 6 6 3.9353 -0.4112 -0.0004 7 6 5.3165 -0.8997 -0.0004 8 8 6.2410 -0.1097 -0.0014 9 8 5.5626 -2.2258 0.0002 10 6 6.9549 -2.6379 0.0008 11 6 7.0346 -4.1657 0.0021 12 6 8.5018 -4.5998 0.0020 13 6 8.5803 -6.1048 0.0039 14 1 7.6744 -6.6928 0.0046 15 6 9.8087 -6.7310 0.0037 16 7 10.9118 -6.0150 0.0013 17 14 9.9060 -8.5965 0.0053 18 1 9.2319 -9.1285 -1.2062 19 1 11.3300 -9.0179 0.0041 20 1 9.2335 -9.1262 1.2188 21 16 2.4803 -1.4050 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 4.7522 2.3259 1.0264 26 1 5.4301 1.7506 -0.5157 27 1 4.0720 2.9013 -0.5145 28 1 7.4493 -2.2486 -0.8894 29 1 7.4489 -2.2478 0.8906 30 1 6.5404 -4.5546 0.8923 31 1 6.5405 -4.5561 -0.8876 32 1 8.9957 -4.2110 -0.8885 33 1 8.9963 -4.2095 0.8914 34 1 11.7760 -6.4556 0.0008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:16 Heat of formation + Delta-G solvation = -64.678734 kcal Electronic energy + Delta-G solvation = -17314.303204 eV Core-core repulsion = 14338.570048 eV Total energy + Delta-G solvation = -2975.733157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62091 -39.64547 -36.49538 -34.01665 -33.27465 -31.74697 -29.58067 -28.98915 -26.92892 -23.73601 -23.21268 -22.10592 -20.43618 -19.45406 -18.36806 -16.92629 -16.61001 -16.46635 -15.98815 -15.42844 -14.65112 -14.48077 -14.08175 -13.76562 -13.51468 -13.36327 -12.76806 -12.65355 -12.33772 -12.21180 -12.16297 -11.90810 -11.55277 -10.97194 -10.70763 -10.67304 -10.47967 -10.43235 -10.03326 -9.80675 -9.72140 -9.53063 -9.19651 -8.97097 -8.39847 -6.04759 -4.08021 -0.10257 0.91175 1.36486 2.09469 2.74633 2.81815 3.31610 3.35996 3.38479 3.66222 4.42241 4.52646 4.66922 4.93880 4.99030 5.01524 5.31136 5.37241 5.48050 5.53912 5.55079 5.59014 5.64968 5.96275 6.06481 6.41451 6.50602 6.77377 6.94669 7.32236 7.58094 7.69078 7.78242 7.93232 8.34076 8.97923 9.56285 11.06655 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.036186 B = 0.003250 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.587242 B = 8612.898634 C = 9350.133220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.050 3.950 3 N -0.482 5.482 4 C 0.159 3.841 5 C -0.092 4.092 6 C -0.296 4.296 7 C 0.542 3.458 8 O -0.495 6.495 9 O -0.354 6.354 10 C 0.070 3.930 11 C -0.109 4.109 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 S 0.219 5.781 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.396 12.983 -0.038 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.224 4.224 3 N -0.198 5.198 4 C 0.020 3.980 5 C -0.151 4.151 6 C -0.418 4.418 7 C 0.385 3.615 8 O -0.386 6.386 9 O -0.271 6.271 10 C -0.002 4.002 11 C -0.147 4.147 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 S 0.478 5.522 22 H 0.110 0.890 23 H 0.104 0.896 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.430 12.520 -0.037 23.961 hybrid contribution 0.903 -0.307 0.014 0.954 sum -19.527 12.212 -0.023 23.032 Atomic orbital electron populations 1.20549 0.84566 1.04694 1.04363 1.27555 1.02445 0.92155 1.00239 1.66097 1.04166 1.31462 1.18080 1.21005 0.90013 0.93130 0.93870 1.20698 0.96894 0.93525 1.03962 1.24805 0.96363 0.96991 1.23665 1.19259 0.86930 0.81848 0.73453 1.90839 1.44886 1.56631 1.46209 1.86589 1.33922 1.23078 1.83475 1.23586 0.76023 0.98191 1.02444 1.21782 1.02049 0.88805 1.02043 1.19046 0.88006 0.96447 0.97731 1.21131 0.92353 0.91412 1.51224 0.92464 1.25029 0.95765 0.98480 0.95156 1.69954 0.97536 1.35468 1.50389 0.86601 0.76952 0.85444 0.78678 1.20167 1.21247 1.20160 1.84209 0.94799 1.09172 1.64063 0.88999 0.89580 0.88892 0.89762 0.88183 0.90414 0.91210 0.91212 0.92076 0.92081 0.96183 0.96187 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.46 36.01 0.38 -0.06 16 2 C 0.05 0.48 7.37 -13.30 -0.10 0.38 16 3 N -0.48 -5.78 10.49 -7.47 -0.08 -5.86 16 4 C 0.16 2.06 6.83 -83.52 -0.57 1.49 16 5 C -0.09 -1.04 9.72 36.00 0.35 -0.69 16 6 C -0.30 -4.11 6.52 -36.79 -0.24 -4.35 16 7 C 0.54 8.90 7.92 34.06 0.27 9.17 16 8 O -0.50 -8.84 14.12 -19.35 -0.27 -9.11 16 9 O -0.35 -6.13 10.12 -40.96 -0.41 -6.54 16 10 C 0.07 1.30 5.48 37.15 0.20 1.51 16 11 C -0.11 -2.26 5.53 -26.73 -0.15 -2.41 16 12 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 13 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 17 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 S 0.22 2.34 23.04 -107.50 -2.48 -0.14 16 22 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.10 1.25 6.06 -51.93 -0.31 0.94 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -31.95 312.95 -7.72 -39.67 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: -4.51 Total: -5.24 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -0.41 Total: -7.94 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.66 Total: -31.91 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.69 Total: -15.66 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.48 Total: -0.14 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.95 -7.72 -39.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.005 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds