Wall clock time and date at job start Mon Mar 30 2020 00:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29394 * 124.70292 * 2 1 4 4 C 1.30913 * 117.46617 * 180.02562 * 3 2 1 5 5 C 1.50697 * 123.03448 * 179.97438 * 4 3 2 6 6 C 1.36767 * 113.93251 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.17715 * 180.02562 * 6 4 3 8 8 O 1.21613 * 120.00143 * 359.94784 * 7 6 4 9 9 O 1.34872 * 119.99575 * 179.97438 * 7 6 4 10 10 C 1.45203 * 117.00071 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46778 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46843 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99668 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99568 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47602 * 59.99891 * 17 15 13 19 19 H 1.48505 * 109.46974 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46968 * 299.99544 * 17 15 13 21 21 S 1.70920 * 124.70986 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.46997 * 90.00095 * 1 2 3 23 23 H 1.09000 * 109.46633 * 210.00011 * 1 2 3 24 24 H 1.09003 * 109.46993 * 329.99423 * 1 2 3 25 25 H 1.09007 * 109.47325 * 90.02322 * 5 4 3 26 26 H 1.09004 * 109.46961 * 210.02029 * 5 4 3 27 27 H 1.08996 * 109.47626 * 330.02703 * 5 4 3 28 28 H 1.09010 * 109.46269 * 299.99777 * 10 9 7 29 29 H 1.08999 * 109.47231 * 59.98836 * 10 9 7 30 30 H 1.08996 * 109.47205 * 299.99150 * 11 10 9 31 31 H 1.08994 * 109.47574 * 59.99628 * 11 10 9 32 32 H 1.08998 * 109.47246 * 299.99507 * 12 11 10 33 33 H 1.08996 * 109.47678 * 59.99780 * 12 11 10 34 34 H 0.97002 * 119.99793 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0638 0.0000 4 6 3.5424 0.8989 -0.0005 5 6 4.5165 2.0487 -0.0011 6 6 3.9353 -0.4112 -0.0004 7 6 5.3165 -0.8997 -0.0004 8 8 6.2410 -0.1097 -0.0014 9 8 5.5626 -2.2258 0.0002 10 6 6.9549 -2.6379 0.0008 11 6 7.0346 -4.1657 0.0021 12 6 8.5018 -4.5998 0.0020 13 6 8.5803 -6.1048 0.0039 14 1 7.6744 -6.6928 0.0046 15 6 9.8087 -6.7310 0.0037 16 7 10.9118 -6.0150 0.0013 17 14 9.9060 -8.5965 0.0053 18 1 9.2319 -9.1285 -1.2062 19 1 11.3300 -9.0179 0.0041 20 1 9.2335 -9.1262 1.2188 21 16 2.4803 -1.4050 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 4.7522 2.3259 1.0264 26 1 5.4301 1.7506 -0.5157 27 1 4.0720 2.9013 -0.5145 28 1 7.4493 -2.2486 -0.8894 29 1 7.4489 -2.2478 0.8906 30 1 6.5404 -4.5546 0.8923 31 1 6.5405 -4.5561 -0.8876 32 1 8.9957 -4.2110 -0.8885 33 1 8.9963 -4.2095 0.8914 34 1 11.7760 -6.4556 0.0008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912958363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:15 Heat of formation + Delta-G solvation = -83.545608 kcal Electronic energy + Delta-G solvation = -17315.121333 eV Core-core repulsion = 14338.570048 eV Total energy + Delta-G solvation = -2976.551286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.75167 -40.74528 -37.88379 -35.95908 -34.10294 -33.68801 -30.31349 -30.11724 -28.69916 -25.45447 -24.03150 -23.43685 -22.20939 -20.58919 -19.41641 -18.54561 -17.98988 -17.82117 -17.40940 -16.49942 -16.39362 -15.55974 -15.52261 -14.83229 -14.50956 -14.25430 -14.15132 -13.84201 -13.80787 -13.51225 -13.25938 -13.00801 -12.81374 -12.54316 -12.51128 -12.39438 -12.12593 -11.83137 -11.50183 -11.46509 -11.28186 -10.87945 -10.68922 -10.57170 -9.83696 -8.22140 -6.33891 -1.03025 0.05008 0.48416 1.06781 1.40605 1.44779 1.45875 1.53239 1.71482 2.41241 2.89703 3.11775 3.56249 3.78822 3.90563 3.96479 4.00841 4.37003 4.49212 4.60488 4.62017 4.66974 4.76827 4.77466 4.85619 5.03092 5.09015 5.16776 5.35004 5.47870 5.62214 5.79087 6.17970 6.43459 6.48624 6.81690 7.35669 8.89905 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.036186 B = 0.003250 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.587242 B = 8612.898634 C = 9350.133220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.071 3.929 3 N -0.504 5.504 4 C 0.166 3.834 5 C -0.092 4.092 6 C -0.339 4.339 7 C 0.541 3.459 8 O -0.519 6.519 9 O -0.355 6.355 10 C 0.080 3.920 11 C -0.094 4.094 12 C 0.027 3.973 13 C -0.545 4.545 14 H 0.066 0.934 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.265 1.265 21 S 0.239 5.761 22 H 0.113 0.887 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H -0.002 1.002 33 H -0.002 1.002 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.059 12.389 -0.023 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.202 4.202 3 N -0.220 5.220 4 C 0.025 3.975 5 C -0.150 4.150 6 C -0.461 4.461 7 C 0.387 3.613 8 O -0.411 6.411 9 O -0.271 6.271 10 C 0.007 3.993 11 C -0.131 4.131 12 C -0.010 4.010 13 C -0.583 4.583 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.190 1.190 21 S 0.499 5.501 22 H 0.131 0.869 23 H 0.128 0.872 24 H 0.121 0.879 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.124 11.921 -0.023 26.016 hybrid contribution 1.593 -0.030 0.008 1.593 sum -21.531 11.891 -0.015 24.597 Atomic orbital electron populations 1.20861 0.81182 1.06342 1.06094 1.28404 1.04138 0.91141 0.96508 1.66219 1.03668 1.32235 1.19874 1.21276 0.90811 0.93131 0.92262 1.20709 0.96158 0.93786 1.04386 1.24681 0.96054 0.98215 1.27170 1.19643 0.88016 0.81035 0.72654 1.90822 1.45966 1.56783 1.47498 1.86555 1.32582 1.24121 1.83887 1.23238 0.77055 0.96759 1.02276 1.21471 0.98692 0.90326 1.02634 1.18922 0.90861 0.95678 0.95551 1.21598 0.92905 0.92725 1.51067 0.91626 1.26012 0.95325 1.03988 0.94545 1.70093 0.98183 1.37740 1.51343 0.85444 0.77128 0.78827 0.79318 1.19015 1.20939 1.19000 1.84076 0.93175 1.08928 1.63954 0.86928 0.87188 0.87917 0.89046 0.89786 0.88658 0.91463 0.91469 0.91402 0.91409 0.98397 0.98400 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.46 71.24 0.75 0.16 16 2 C 0.07 1.19 7.37 88.47 0.65 1.84 16 3 N -0.50 -11.14 10.49 -177.55 -1.86 -13.00 16 4 C 0.17 4.17 6.83 42.35 0.29 4.46 16 5 C -0.09 -2.04 9.72 71.24 0.69 -1.35 16 6 C -0.34 -9.30 6.52 24.08 0.16 -9.14 16 7 C 0.54 18.03 7.92 69.98 0.55 18.58 16 8 O -0.52 -19.07 14.12 19.47 0.27 -18.80 16 9 O -0.35 -12.32 10.12 -57.86 -0.59 -12.91 16 10 C 0.08 3.02 5.48 71.98 0.39 3.41 16 11 C -0.09 -3.90 5.53 30.59 0.17 -3.73 16 12 C 0.03 1.43 4.97 29.85 0.15 1.57 16 13 C -0.55 -30.82 9.11 25.60 0.23 -30.59 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 16 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 17 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 S 0.24 4.71 23.04 -56.49 -1.30 3.41 16 22 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 23 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 24 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 25 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.08 2.16 6.06 -2.38 -0.01 2.15 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -69.20 312.95 4.43 -64.76 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: 1.10 Total: 1.57 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 4.50 Total: -14.35 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -1.58 Total: -69.57 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.31 Total: -31.71 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.30 Total: 3.41 kcal Total: -69.20 4.43 -64.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.783 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds