Wall clock time and date at job start Mon Mar 30 2020 01:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47387 * 299.99667 * 3 2 1 6 6 H 1.48498 * 109.47096 * 60.00128 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.38243 * 119.95095 * 105.00073 * 13 12 11 15 15 C 1.38176 * 120.11471 * 179.97438 * 14 13 12 16 16 C 1.38707 * 120.01203 * 0.02562 * 15 14 13 17 17 O 1.35950 * 120.04779 * 180.02562 * 16 15 14 18 18 C 1.38829 * 119.89961 * 0.02562 * 16 15 14 19 19 F 1.35105 * 120.05794 * 180.02562 * 18 16 15 20 20 C 1.38457 * 119.94551 * 284.72520 * 13 12 11 21 21 F 1.35098 * 120.01020 * 0.02562 * 20 13 12 22 22 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 23 23 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 24 24 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 25 25 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 26 26 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 27 27 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 28 28 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 29 29 H 1.07994 * 119.94401 * 359.97438 * 14 13 12 30 30 H 1.07998 * 119.99527 * 180.02562 * 15 14 13 31 31 H 0.96698 * 114.00168 * 89.99732 * 17 16 15 32 32 H 1.09007 * 113.75652 * 270.36911 * 22 11 10 33 33 H 1.08992 * 113.86038 * 139.01836 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8758 -5.2942 -3.2050 14 6 0.8349 -4.5437 -4.3652 15 6 -0.0794 -4.8475 -5.3557 16 6 -0.9588 -5.9068 -5.1868 17 8 -1.8584 -6.2067 -6.1610 18 6 -0.9190 -6.6602 -4.0214 19 9 -1.7738 -7.6930 -3.8537 20 6 0.0040 -6.3562 -3.0339 21 9 0.0489 -7.0916 -1.9015 22 6 2.1611 -3.7399 -0.0455 23 1 -0.4850 0.8400 -0.0004 24 1 0.4835 -2.5465 0.7729 25 1 -0.3212 -2.8279 -1.5258 26 1 1.3294 -2.4995 -2.2139 27 1 2.6375 -4.2949 -2.5327 28 1 2.3447 -5.8766 -1.7705 29 1 1.5188 -3.7185 -4.4978 30 1 -0.1094 -4.2601 -6.2614 31 1 -1.5328 -6.8393 -6.8158 32 1 3.1447 -3.5475 -0.4741 33 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140889795.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:01 Heat of formation + Delta-G solvation = -94.904507 kcal Electronic energy + Delta-G solvation = -20231.771808 eV Core-core repulsion = 16700.887577 eV Total energy + Delta-G solvation = -3530.884231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.53124 -49.61487 -40.97900 -40.08943 -37.84626 -34.77950 -32.86349 -31.45365 -29.70152 -27.24612 -26.65765 -24.59340 -24.06176 -22.54481 -20.42673 -19.90854 -18.84978 -18.61773 -18.13469 -17.73408 -17.24667 -16.69774 -16.33746 -16.10156 -15.83464 -15.76970 -15.67096 -15.26467 -14.73548 -14.31554 -13.95660 -13.83095 -13.21780 -13.13093 -12.91042 -12.83484 -12.65096 -12.33345 -12.11061 -11.90131 -11.60669 -11.12186 -10.94638 -10.51908 -9.86274 -9.74853 -9.55591 -8.12598 -6.24624 -0.21946 -0.16242 1.43473 1.46165 1.57133 2.16731 2.44553 2.50990 3.11494 3.17349 3.26003 3.34541 3.48046 3.71105 3.94815 4.19712 4.31017 4.42233 4.54390 4.63575 4.73600 4.76407 4.86940 4.91422 4.98417 4.99432 5.15940 5.26060 5.50969 5.58530 5.65620 5.86380 6.30731 6.36113 6.63426 6.85239 7.44518 8.97123 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.004705 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.940304 B = 5949.107699 C = 6430.878880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.017 3.983 10 C 0.033 3.967 11 N -0.494 5.494 12 C 0.060 3.940 13 C -0.098 4.098 14 C -0.072 4.072 15 C -0.113 4.113 16 C 0.107 3.893 17 O -0.490 6.490 18 C 0.012 3.988 19 F -0.136 7.136 20 C 0.082 3.918 21 F -0.134 7.134 22 C 0.015 3.985 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.164 0.836 30 H 0.180 0.820 31 H 0.418 0.582 32 H 0.074 0.926 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -11.025 -13.942 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.566 4.566 8 H 0.081 0.919 9 C -0.003 4.003 10 C -0.096 4.096 11 N -0.217 5.217 12 C -0.068 4.068 13 C -0.100 4.100 14 C -0.090 4.090 15 C -0.131 4.131 16 C 0.060 3.940 17 O -0.304 6.304 18 C -0.008 4.008 19 F -0.115 7.115 20 C 0.061 3.939 21 F -0.112 7.112 22 C -0.113 4.113 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.182 0.818 30 H 0.197 0.803 31 H 0.278 0.722 32 H 0.092 0.908 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.163 -11.121 -13.392 17.541 hybrid contribution 0.571 0.549 0.072 0.795 sum 2.733 -10.572 -13.320 17.224 Atomic orbital electron populations 1.70112 1.07644 1.27460 1.51039 1.25820 0.95501 1.02682 0.94432 0.85520 0.79271 0.79444 0.77496 1.18563 1.20530 1.21086 1.21447 0.93116 0.91239 1.50818 0.91887 1.20307 0.94110 0.92518 0.93325 1.23784 0.98479 0.87526 0.99842 1.68660 1.26754 1.16196 1.10081 1.21553 0.93841 1.00800 0.90571 1.19935 0.98039 0.94380 0.97624 1.21272 0.98654 0.98244 0.90844 1.21668 0.92984 0.96723 1.01770 1.18217 0.92257 0.95349 0.88159 1.84832 1.39261 1.67281 1.39038 1.18333 0.93769 0.90921 0.97811 1.91466 1.68313 1.55933 1.95797 1.17578 0.98701 0.94329 0.83258 1.91490 1.95611 1.75539 1.48586 1.23953 0.95197 0.95644 0.96491 0.92953 0.96364 0.94070 0.91841 0.91027 0.89309 0.81807 0.80278 0.72175 0.90827 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 13.29 21.45 0.28 -53.30 16 2 C 0.01 0.80 5.46 84.66 0.46 1.26 16 3 Si 0.96 42.04 29.54 68.60 2.03 44.06 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.53 -27.94 8.77 25.60 0.22 -27.72 16 8 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.02 0.83 3.60 -10.89 -0.04 0.79 16 10 C 0.03 1.46 7.05 86.34 0.61 2.07 16 11 N -0.49 -19.49 6.26 -911.60 -5.71 -25.20 16 12 C 0.06 1.84 4.64 85.56 0.40 2.24 16 13 C -0.10 -2.82 4.92 -19.81 -0.10 -2.92 16 14 C -0.07 -1.61 9.65 22.26 0.21 -1.39 16 15 C -0.11 -2.17 9.98 22.37 0.22 -1.95 16 16 C 0.11 2.43 6.71 22.52 0.15 2.58 16 17 O -0.49 -9.21 13.37 -92.99 -1.24 -10.46 16 18 C 0.01 0.35 7.32 22.48 0.16 0.52 16 19 F -0.14 -4.21 17.03 44.97 0.77 -3.45 16 20 C 0.08 2.58 7.25 22.40 0.16 2.74 16 21 F -0.13 -4.73 16.66 44.97 0.75 -3.98 16 22 C 0.02 0.62 7.53 86.41 0.65 1.27 16 23 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 24 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 2.70 7.74 -2.39 -0.02 2.68 16 27 H 0.07 1.97 7.50 -2.39 -0.02 1.95 16 28 H 0.09 2.56 8.07 -2.38 -0.02 2.54 16 29 H 0.16 3.01 8.00 -2.91 -0.02 2.99 16 30 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.42 3.12 9.06 -74.06 -0.67 2.44 16 32 H 0.07 2.71 7.74 -2.38 -0.02 2.69 16 33 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -66.42 297.04 0.48 -65.94 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.48 Total: 6.88 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 3.12 Total: -20.50 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -5.42 Total: -78.49 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.24 Total: -10.46 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 1.51 Total: -7.43 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -66.42 0.48 -65.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140889795.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.961 kcal (2) G-P(sol) polarization free energy of solvation -66.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds