Wall clock time and date at job start Mon Mar 30 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.36461 * 126.73770 * 222.27328 * 3 2 1 5 5 N 1.35551 * 109.78829 * 180.02562 * 4 3 2 6 6 H 0.96992 * 124.82316 * 180.02562 * 5 4 3 7 7 C 1.38034 * 110.35572 * 0.02562 * 5 4 3 8 8 C 1.38741 * 133.12888 * 180.02562 * 7 5 4 9 9 C 1.39291 * 119.67817 * 179.97438 * 8 7 5 10 10 C 1.47616 * 119.84596 * 179.97438 * 9 8 7 11 11 O 1.21581 * 120.00361 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99811 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00055 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47278 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99608 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00214 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99865 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47382 * 89.99340 * 18 16 14 20 20 H 1.48498 * 109.47162 * 209.99693 * 18 16 14 21 21 H 1.48507 * 109.47172 * 329.99532 * 18 16 14 22 22 C 1.40142 * 120.30147 * 359.97438 * 9 8 7 23 23 C 1.36350 * 120.30193 * 0.26219 * 22 9 8 24 24 C 1.39559 * 119.98299 * 359.48060 * 23 22 9 25 25 H 1.08003 * 125.10068 * 0.04376 * 4 3 2 26 26 H 1.08000 * 120.15589 * 359.97438 * 8 7 5 27 27 H 0.97005 * 119.99732 * 0.02562 * 12 10 9 28 28 H 1.08995 * 109.47312 * 300.00388 * 13 12 10 29 29 H 1.09002 * 109.47093 * 60.00037 * 13 12 10 30 30 H 0.97004 * 119.99980 * 180.02562 * 17 16 14 31 31 H 1.07997 * 119.84806 * 180.02562 * 22 9 8 32 32 H 1.07997 * 120.01016 * 179.71113 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3839 0.8102 0.7356 5 7 4.6806 0.5188 0.4694 6 1 5.4424 0.9630 0.8733 7 6 4.7631 -0.5001 -0.4582 8 6 5.8305 -1.1554 -1.0549 9 6 5.5880 -2.1701 -1.9779 10 6 6.7210 -2.8694 -2.6155 11 8 7.8625 -2.5591 -2.3350 12 7 6.4899 -3.8520 -3.5086 13 6 7.6142 -4.5457 -4.1418 14 6 7.0888 -5.5916 -5.0910 15 1 6.0239 -5.7259 -5.2110 16 6 7.9676 -6.3771 -5.8063 17 7 9.2644 -6.2133 -5.6606 18 14 7.3164 -7.6731 -6.9835 19 1 7.1422 -7.0748 -8.3314 20 1 8.2811 -8.7993 -7.0627 21 1 6.0082 -8.1755 -6.4921 22 6 4.2735 -2.5300 -2.3040 23 6 3.2202 -1.8865 -1.7246 24 6 3.4490 -0.8718 -0.7942 25 1 3.0469 1.5689 1.4264 26 1 6.8445 -0.8801 -0.8050 27 1 5.5790 -4.0994 -3.7326 28 1 8.2211 -3.8269 -4.6922 29 1 8.2238 -5.0244 -3.3754 30 1 9.8827 -6.7657 -6.1641 31 1 4.0939 -3.3181 -3.0203 32 1 2.2091 -2.1646 -1.9828 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156059903.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:44 Heat of formation + Delta-G solvation = 45.085114 kcal Electronic energy + Delta-G solvation = -18341.643234 eV Core-core repulsion = 15267.518594 eV Total energy + Delta-G solvation = -3074.124639 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72095 -39.12344 -36.75445 -36.48781 -34.30675 -32.40897 -32.34300 -29.95023 -29.60390 -27.17911 -23.94286 -23.14151 -22.77536 -22.06620 -19.86487 -18.76865 -17.42674 -16.91671 -16.35131 -15.81827 -15.39282 -15.17871 -14.73421 -14.33622 -14.03637 -13.97261 -13.86577 -13.38660 -13.29476 -12.96970 -12.78190 -12.11511 -12.06181 -11.83665 -11.56272 -11.17536 -10.99594 -10.89805 -10.33470 -9.92480 -9.42467 -9.25925 -8.76561 -8.59514 -8.10278 -7.88182 -6.18394 -4.25458 0.61420 1.11806 1.73670 2.46808 2.62386 3.08248 3.24159 3.30484 3.32721 3.49449 3.85932 4.01993 4.09109 4.28793 4.34925 4.50583 4.98694 5.01993 5.18125 5.23596 5.24325 5.31037 5.46022 5.80461 6.11544 6.20533 6.32509 6.37943 6.77747 6.96833 7.27306 7.35992 7.44522 7.48357 7.63590 7.94186 8.55824 8.73755 9.01103 9.41100 10.91798 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.033012 B = 0.003495 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.982181 B = 8009.882422 C = 8842.720122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.293 3.707 3 C -0.140 4.140 4 C 0.140 3.860 5 N -0.571 5.571 6 H 0.427 0.573 7 C 0.080 3.920 8 C -0.059 4.059 9 C -0.100 4.100 10 C 0.540 3.460 11 O -0.553 6.553 12 N -0.702 5.702 13 C 0.249 3.751 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.097 4.097 23 C -0.086 4.086 24 C -0.054 4.054 25 H 0.187 0.813 26 H 0.140 0.860 27 H 0.391 0.609 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.266 0.734 31 H 0.135 0.865 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.212 13.431 12.229 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.022 4.022 3 C -0.152 4.152 4 C 0.002 3.998 5 N -0.171 5.171 6 H 0.265 0.735 7 C -0.025 4.025 8 C -0.080 4.080 9 C -0.105 4.105 10 C 0.325 3.675 11 O -0.434 6.434 12 N -0.350 5.350 13 C 0.128 3.872 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.117 4.117 23 C -0.104 4.104 24 C -0.060 4.060 25 H 0.204 0.796 26 H 0.158 0.842 27 H 0.226 0.774 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.808 13.573 12.362 21.304 hybrid contribution 0.104 -0.640 -0.592 0.878 sum -10.704 12.933 11.770 20.503 Atomic orbital electron populations 1.81278 1.11718 1.09087 1.09491 1.24549 0.91297 0.93208 0.93100 1.15748 0.84634 1.06020 1.08800 1.21912 0.82194 0.97909 0.97749 1.41545 1.07593 1.31351 1.36652 0.73490 1.17981 0.94933 0.93654 0.95918 1.20154 0.97519 0.94750 0.95566 1.19935 0.93963 0.97795 0.98767 1.18102 0.88049 0.80876 0.80426 1.90737 1.22716 1.66201 1.63719 1.46433 1.11992 1.35168 1.41409 1.19168 0.84071 0.91413 0.92523 1.21217 0.93432 1.18791 1.24828 0.91816 1.24943 0.94717 0.97391 0.96906 1.69973 1.01429 1.39726 1.41144 0.86408 0.78728 0.80803 0.80948 1.20438 1.21012 1.19686 1.20949 0.91184 0.99776 0.99750 1.20122 0.99485 0.94962 0.95854 1.18845 0.90739 0.97701 0.98681 0.79632 0.84218 0.77445 0.95254 0.95244 0.92414 0.84771 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.68 18.54 41.84 0.78 -4.90 16 2 C 0.29 3.13 15.86 -22.47 -0.36 2.78 16 3 C -0.14 -1.26 6.12 -104.95 -0.64 -1.90 16 4 C 0.14 0.76 11.77 -16.55 -0.19 0.56 16 5 N -0.57 -3.43 6.00 -10.46 -0.06 -3.49 16 6 H 0.43 1.19 8.96 -40.82 -0.37 0.82 16 7 C 0.08 0.81 7.24 -83.98 -0.61 0.20 16 8 C -0.06 -0.74 9.61 -39.00 -0.37 -1.12 16 9 C -0.10 -1.49 5.87 -104.96 -0.62 -2.11 16 10 C 0.54 10.65 7.76 -12.43 -0.10 10.56 16 11 O -0.55 -12.90 16.31 5.29 0.09 -12.81 16 12 N -0.70 -14.49 5.50 -62.50 -0.34 -14.84 16 13 C 0.25 6.45 5.43 -5.19 -0.03 6.42 16 14 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 18 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C -0.10 -1.22 9.47 -39.55 -0.37 -1.60 16 23 C -0.09 -0.96 10.02 -39.77 -0.40 -1.36 16 24 C -0.05 -0.59 6.34 -104.84 -0.67 -1.25 16 25 H 0.19 0.23 8.06 -52.48 -0.42 -0.20 16 26 H 0.14 1.74 7.62 -52.49 -0.40 1.34 16 27 H 0.39 6.88 6.31 -40.82 -0.26 6.62 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.13 1.52 6.36 -52.49 -0.33 1.19 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -34.27 298.31 -6.69 -40.96 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -2.58 Total: 1.98 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -4.77 Total: -1.97 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 1.11 Total: -48.21 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.27 -6.69 -40.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156059903.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.045 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds