Wall clock time and date at job start Mon Mar 30 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86803 * 120.00280 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00175 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00222 * 3 2 1 7 7 C 1.38817 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36872 * 119.99754 * 0.27474 * 7 2 1 10 10 C 1.38766 * 119.99829 * 179.71883 * 9 7 2 11 11 C 1.39996 * 119.97986 * 0.02562 * 10 9 7 12 12 C 1.37636 * 117.50412 * 179.86878 * 11 10 9 13 13 C 1.40262 * 118.36897 * 359.96348 * 12 11 10 14 14 N 1.32143 * 120.07828 * 0.18670 * 13 12 11 15 15 N 1.28625 * 121.56967 * 359.53132 * 14 13 12 16 16 C 1.48049 * 117.49948 * 180.37633 * 13 12 11 17 17 C 1.38836 * 121.72853 * 195.76674 * 16 13 12 18 18 C 1.38169 * 119.62948 * 179.26081 * 17 16 13 19 19 C 1.38414 * 120.19162 * 0.06464 * 18 17 16 20 20 C 1.38231 * 120.55408 * 0.12497 * 19 18 17 21 21 C 1.38448 * 119.96575 * 359.97050 * 20 19 18 22 22 O 1.35612 * 120.89366 * 179.68452 * 21 20 19 23 23 C 1.42820 * 118.40089 * 145.46409 * 22 21 20 24 24 H 0.97005 * 119.99685 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99755 * 359.72580 * 9 7 2 26 26 H 1.07994 * 121.24455 * 359.89552 * 11 10 9 27 27 H 1.08000 * 120.18809 * 359.26457 * 17 16 13 28 28 H 1.07995 * 119.90305 * 180.02562 * 18 17 16 29 29 H 1.07997 * 119.72275 * 180.14739 * 19 18 17 30 30 H 1.08003 * 120.01992 * 179.97438 * 20 19 18 31 31 H 1.08997 * 109.33825 * 287.65604 * 23 22 21 32 32 H 1.09004 * 109.33997 * 168.14460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3462 0.0006 5 1 1.8910 2.3964 -1.2124 6 1 1.8911 2.3964 1.2125 7 6 2.0097 -1.2022 -0.0005 8 1 3.0897 -1.2022 -0.0010 9 7 1.3253 -2.3875 -0.0068 10 6 2.0191 -3.5893 -0.0132 11 6 3.4190 -3.5888 -0.0128 12 6 4.0550 -4.8094 -0.0165 13 6 3.2685 -5.9707 -0.0197 14 7 1.9503 -5.8778 -0.0228 15 7 1.3556 -4.7374 -0.0140 16 6 3.9725 -7.2731 -0.0151 17 6 3.3215 -8.4561 -0.3385 18 6 4.0246 -9.6455 -0.3351 19 6 5.3699 -9.6580 -0.0099 20 6 6.0247 -8.4854 0.3170 21 6 5.3341 -7.2855 0.3203 22 8 5.9563 -6.1249 0.6442 23 6 5.5525 -4.9284 -0.0230 24 1 -0.4850 0.8401 0.0004 25 1 0.3553 -2.3874 -0.0068 26 1 3.9789 -2.6653 -0.0092 27 1 2.2716 -8.4466 -0.5913 28 1 3.5227 -10.5682 -0.5864 29 1 5.9126 -10.5917 -0.0120 30 1 7.0746 -8.5052 0.5698 31 1 5.9084 -4.9518 -1.0529 32 1 5.9852 -4.0674 0.4865 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:55 Heat of formation + Delta-G solvation = 30.450239 kcal Electronic energy + Delta-G solvation = -19204.216205 eV Core-core repulsion = 16129.456950 eV Total energy + Delta-G solvation = -3074.759255 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.19440 -40.57743 -38.40051 -37.71090 -34.62364 -34.38201 -32.64912 -31.27156 -30.13613 -28.02342 -27.09850 -25.11303 -24.25731 -22.88536 -21.77827 -20.06152 -19.27412 -18.67051 -17.81361 -17.54186 -16.91107 -16.65619 -16.09534 -15.66967 -15.50767 -15.43193 -14.95920 -14.80195 -14.24368 -13.76180 -13.69790 -13.53055 -13.23950 -12.87166 -12.61365 -12.43308 -12.28218 -12.09124 -11.95207 -11.59522 -11.12411 -10.81995 -10.31980 -10.00065 -9.41469 -8.81190 -8.68536 -5.97212 -0.21932 0.08137 0.46266 0.86839 1.41569 1.47714 1.56772 2.12765 2.27380 2.63353 2.75679 2.95122 3.17958 3.30322 3.56862 3.79732 3.96647 4.09888 4.16552 4.26139 4.34266 4.49582 4.51799 4.56348 4.69592 4.93102 5.00008 5.13601 5.20615 5.29055 5.48095 5.60972 5.62728 5.71997 5.89451 6.41102 6.54448 7.08125 7.21891 8.18607 8.48789 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.039030 B = 0.004421 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.215611 B = 6332.602884 C = 7007.593946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.017 4.017 3 Si 1.011 2.989 4 H -0.246 1.246 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.329 4.329 8 H 0.124 0.876 9 N -0.521 5.521 10 C 0.278 3.722 11 C -0.174 4.174 12 C -0.090 4.090 13 C -0.026 4.026 14 N -0.200 5.200 15 N -0.387 5.387 16 C -0.100 4.100 17 C -0.086 4.086 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.141 4.141 21 C 0.102 3.898 22 O -0.320 6.320 23 C 0.118 3.882 24 H 0.284 0.716 25 H 0.398 0.602 26 H 0.162 0.838 27 H 0.120 0.880 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.156 0.844 31 H 0.098 0.902 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.091 -10.768 -1.026 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.219 4.219 3 Si 0.833 3.167 4 H -0.169 1.169 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.141 0.859 9 N -0.127 5.127 10 C 0.030 3.970 11 C -0.207 4.207 12 C -0.100 4.100 13 C -0.179 4.179 14 N -0.042 5.042 15 N -0.247 5.247 16 C -0.102 4.102 17 C -0.105 4.105 18 C -0.159 4.159 19 C -0.102 4.102 20 C -0.159 4.159 21 C 0.056 3.944 22 O -0.234 6.234 23 C 0.043 3.957 24 H 0.094 0.906 25 H 0.232 0.768 26 H 0.180 0.820 27 H 0.138 0.862 28 H 0.172 0.828 29 H 0.186 0.814 30 H 0.174 0.826 31 H 0.116 0.884 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.616 -10.909 -0.894 16.702 hybrid contribution -0.030 1.927 -0.107 1.931 sum 12.585 -8.982 -1.002 15.494 Atomic orbital electron populations 1.69815 1.07956 1.30353 1.46590 1.26482 0.96554 1.03652 0.95261 0.84586 0.78932 0.75214 0.78000 1.16921 1.20100 1.20170 1.20321 0.94102 0.82100 1.49330 0.85865 1.40859 1.08632 1.01521 1.61678 1.20227 0.90927 0.88220 0.97649 1.21368 0.92770 0.98951 1.07627 1.21433 0.99133 0.92798 0.96588 1.20584 0.91532 0.94117 1.11704 1.72468 1.09031 1.16659 1.06090 1.72725 1.31084 0.93683 1.27195 1.18581 0.92843 0.91923 1.06901 1.21089 1.00082 0.91575 0.97775 1.21425 0.95179 0.97620 1.01626 1.21452 0.94209 0.98315 0.96177 1.20891 1.01274 0.89665 1.04068 1.19265 0.89304 0.87436 0.98412 1.85788 1.60193 1.14352 1.63092 1.21766 0.87280 0.86591 1.00043 0.90627 0.76793 0.82027 0.86207 0.82802 0.81375 0.82615 0.88415 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.32 13.05 21.65 0.28 -47.04 16 2 C -0.02 -0.80 5.50 84.87 0.47 -0.34 16 3 Si 1.01 36.83 29.55 68.60 2.03 38.85 16 4 H -0.25 -8.14 7.11 99.48 0.71 -7.44 16 5 H -0.28 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.28 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.33 -15.94 9.55 84.05 0.80 -15.14 16 8 H 0.12 5.37 5.70 -2.91 -0.02 5.35 16 9 N -0.52 -26.55 5.44 -188.60 -1.03 -27.58 16 10 C 0.28 13.56 7.71 133.29 1.03 14.59 16 11 C -0.17 -7.17 9.16 22.55 0.21 -6.96 16 12 C -0.09 -3.40 5.83 -19.66 -0.11 -3.51 16 13 C -0.03 -1.09 6.78 42.19 0.29 -0.80 16 14 N -0.20 -9.56 11.11 -48.55 -0.54 -10.10 16 15 N -0.39 -19.79 11.53 -54.88 -0.63 -20.42 16 16 C -0.10 -3.52 5.82 -20.04 -0.12 -3.63 16 17 C -0.09 -2.62 9.68 22.40 0.22 -2.40 16 18 C -0.14 -3.06 10.04 22.30 0.22 -2.83 16 19 C -0.08 -1.52 10.02 22.31 0.22 -1.30 16 20 C -0.14 -3.13 10.00 22.32 0.22 -2.90 16 21 C 0.10 3.08 6.47 22.81 0.15 3.23 16 22 O -0.32 -9.50 10.32 -89.24 -0.92 -10.42 16 23 C 0.12 3.24 6.99 71.09 0.50 3.74 16 24 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 25 H 0.40 21.50 8.01 -92.71 -0.74 20.76 16 26 H 0.16 5.83 6.05 -2.91 -0.02 5.81 16 27 H 0.12 3.86 7.88 -2.91 -0.02 3.84 16 28 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 29 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.15 3.15 8.11 -2.38 -0.02 3.13 16 Total: -1.00 -64.09 282.26 3.72 -60.36 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.44 Total: 34.62 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 4.09 Total: -18.27 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -1.91 Total: -105.15 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.92 Total: -10.42 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.85 kcal Total: -64.09 3.72 -60.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.815 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds