Wall clock time and date at job start Mon Mar 30 2020 01:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46803 * 299.99616 * 3 2 1 6 6 H 1.48494 * 109.47469 * 59.99440 * 3 2 1 7 7 C 1.38948 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00426 * 200.05008 * 7 2 1 9 9 N 1.37102 * 119.99707 * 20.05714 * 7 2 1 10 10 C 1.46501 * 120.00395 * 38.31426 * 9 7 2 11 11 C 1.50701 * 109.46839 * 90.00251 * 10 9 7 12 12 C 1.38234 * 120.00382 * 90.00009 * 11 10 9 13 13 C 1.38226 * 120.00298 * 179.97438 * 12 11 10 14 14 C 1.38238 * 120.00285 * 359.97438 * 13 12 11 15 15 C 1.38237 * 119.99511 * 0.27328 * 14 13 12 16 16 C 1.38230 * 120.00173 * 359.51543 * 15 14 13 17 17 C 1.34776 * 119.99644 * 218.31956 * 9 7 2 18 18 O 1.21301 * 119.99941 * 185.02072 * 17 9 7 19 19 C 1.50702 * 120.00182 * 5.01745 * 17 9 7 20 20 C 1.52998 * 109.47059 * 185.38410 * 19 17 9 21 21 F 1.39908 * 109.47183 * 65.00266 * 20 19 17 22 22 F 1.39901 * 109.47242 * 184.99774 * 20 19 17 23 23 H 0.97001 * 120.00057 * 354.98301 * 1 2 3 24 24 H 1.09003 * 109.46969 * 330.00460 * 10 9 7 25 25 H 1.08995 * 109.47219 * 210.00188 * 10 9 7 26 26 H 1.08003 * 119.99620 * 359.97438 * 12 11 10 27 27 H 1.08006 * 119.99844 * 180.02562 * 13 12 11 28 28 H 1.07994 * 119.99973 * 180.02562 * 14 13 12 29 29 H 1.08000 * 119.99368 * 179.72447 * 15 14 13 30 30 H 1.07997 * 120.00324 * 180.27042 * 16 15 14 31 31 H 1.09003 * 109.47012 * 305.38290 * 19 17 9 32 32 H 1.09003 * 109.47103 * 65.38742 * 19 17 9 33 33 H 1.08998 * 109.47576 * 305.00351 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0398 -1.2315 0.3212 9 7 1.3857 -2.3548 -0.4062 10 6 0.4504 -2.3228 -1.5333 11 6 1.2006 -2.5749 -2.8158 12 6 1.3576 -3.8667 -3.2822 13 6 2.0453 -4.0978 -4.4588 14 6 2.5755 -3.0372 -5.1694 15 6 2.4228 -1.7459 -4.7003 16 6 1.7315 -1.5143 -3.5260 17 6 1.6335 -3.5162 0.2311 18 8 1.1540 -4.5502 -0.1842 19 6 2.5064 -3.5304 1.4595 20 6 2.7355 -4.9759 1.9057 21 9 3.4654 -5.6565 0.9252 22 9 3.4494 -4.9850 3.1088 23 1 -0.4850 0.8368 0.0735 24 1 -0.0297 -1.3453 -1.5793 25 1 -0.3078 -3.0940 -1.3983 26 1 0.9430 -4.6953 -2.7273 27 1 2.1676 -5.1071 -4.8234 28 1 3.1123 -3.2179 -6.0889 29 1 2.8409 -0.9177 -5.2532 30 1 1.6084 -0.5051 -3.1618 31 1 3.4648 -3.0649 1.2296 32 1 2.0160 -2.9765 2.2601 33 1 1.7739 -5.4684 2.0500 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182964032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:03 Heat of formation + Delta-G solvation = -117.565726 kcal Electronic energy + Delta-G solvation = -20708.818276 eV Core-core repulsion = 17176.951381 eV Total energy + Delta-G solvation = -3531.866895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.42961 -46.42026 -39.14450 -38.01023 -35.01863 -32.03514 -31.46859 -30.29174 -30.19946 -25.99224 -24.86475 -22.88703 -21.91803 -20.68424 -19.29243 -17.57595 -17.06954 -16.79133 -16.06139 -15.58117 -15.46424 -14.78492 -14.53386 -14.27515 -14.07235 -13.94657 -13.34152 -12.83490 -12.80605 -12.73509 -12.47093 -12.13992 -11.99088 -11.54243 -11.39501 -11.27321 -11.07659 -10.85007 -10.52031 -10.43116 -10.36496 -10.15990 -9.33440 -8.74917 -8.32733 -8.10210 -7.67704 -6.54916 -4.25320 1.93172 2.00196 2.99319 3.12784 3.16484 3.70067 3.92678 4.16812 4.40107 4.72728 4.79553 4.91637 5.23399 5.42687 5.43808 5.47460 5.58030 5.85323 6.06486 6.13707 6.13970 6.19465 6.26234 6.44332 6.60651 6.73058 7.02999 7.03950 7.09538 7.30729 7.42853 7.61719 7.75896 8.19259 8.90020 9.27736 9.72989 10.47313 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.009246 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.516036 B = 3027.645310 C = 4678.734137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.050 3.950 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.343 4.343 8 H 0.090 0.910 9 N -0.425 5.425 10 C 0.147 3.853 11 C -0.080 4.080 12 C -0.101 4.101 13 C -0.132 4.132 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.097 4.097 17 C 0.476 3.524 18 O -0.599 6.599 19 C -0.170 4.170 20 C 0.276 3.724 21 F -0.203 7.203 22 F -0.216 7.216 23 H 0.273 0.727 24 H 0.114 0.886 25 H 0.065 0.935 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -2.011 -2.591 4.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.157 4.157 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.471 4.471 8 H 0.108 0.892 9 N -0.142 5.142 10 C 0.024 3.976 11 C -0.081 4.081 12 C -0.120 4.120 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.116 4.116 17 C 0.265 3.735 18 O -0.486 6.486 19 C -0.211 4.211 20 C 0.221 3.779 21 F -0.184 7.184 22 F -0.198 7.198 23 H 0.083 0.917 24 H 0.132 0.868 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.134 0.866 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.303 -2.353 -2.849 4.354 hybrid contribution 0.677 1.026 0.066 1.231 sum 2.980 -1.327 -2.782 4.287 Atomic orbital electron populations 1.69827 1.06271 1.28257 1.44894 1.25383 0.95121 0.99884 0.95354 0.86110 0.80265 0.81648 0.78247 1.18992 1.20238 1.20504 1.19469 0.96269 0.84616 1.46759 0.89247 1.43304 1.39397 1.06597 1.24901 1.20456 0.90920 1.04620 0.81628 1.20586 0.98174 0.92789 0.96549 1.21289 0.98188 0.97136 0.95375 1.21060 0.99560 0.98348 0.96081 1.20975 1.01224 0.93111 0.99887 1.21043 1.00429 0.96532 0.97100 1.21105 0.96992 0.99239 0.94240 1.19897 0.84143 0.84646 0.84827 1.90556 1.56465 1.32613 1.68953 1.22404 1.03641 0.94496 1.00528 1.21628 0.89831 0.94083 0.72313 1.92958 1.80323 1.81903 1.63243 1.92933 1.81858 1.97484 1.47492 0.91657 0.86790 0.91677 0.85643 0.86958 0.87113 0.86936 0.86266 0.88010 0.86601 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.94 11.43 55.50 0.63 -20.31 16 2 C 0.05 1.16 4.98 -17.47 -0.09 1.07 16 3 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.34 -8.13 8.57 -14.93 -0.13 -8.26 16 8 H 0.09 2.07 6.98 -52.49 -0.37 1.70 16 9 N -0.43 -10.05 2.50 -116.09 -0.29 -10.34 16 10 C 0.15 3.35 5.09 -5.19 -0.03 3.32 16 11 C -0.08 -1.67 5.46 -104.62 -0.57 -2.24 16 12 C -0.10 -2.00 9.57 -39.59 -0.38 -2.38 16 13 C -0.13 -2.26 10.05 -39.59 -0.40 -2.66 16 14 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 15 C -0.13 -2.24 10.05 -39.58 -0.40 -2.63 16 16 C -0.10 -1.89 9.70 -39.58 -0.38 -2.27 16 17 C 0.48 10.88 7.50 -10.98 -0.08 10.79 16 18 O -0.60 -14.53 14.43 5.54 0.08 -14.45 16 19 C -0.17 -3.24 4.83 -27.88 -0.13 -3.37 16 20 C 0.28 4.84 4.81 37.16 0.18 5.02 16 21 F -0.20 -4.01 16.86 2.25 0.04 -3.97 16 22 F -0.22 -3.64 17.34 2.25 0.04 -3.60 16 23 H 0.27 6.30 8.32 -40.82 -0.34 5.96 16 24 H 0.11 2.73 5.47 -51.93 -0.28 2.45 16 25 H 0.06 1.51 7.44 -51.93 -0.39 1.13 16 26 H 0.13 2.58 7.38 -52.48 -0.39 2.19 16 27 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.10 1.90 7.29 -51.93 -0.38 1.52 16 32 H 0.12 2.07 8.14 -51.93 -0.42 1.64 16 33 H 0.11 1.84 7.88 -51.93 -0.41 1.43 16 LS Contribution 295.26 15.07 4.45 4.45 Total: -1.00 -26.69 295.26 -6.35 -33.04 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -3.46 Total: 8.02 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.81 Total: -6.13 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.34 Total: -30.65 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.08 Total: -7.56 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.69 -6.35 -33.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182964032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.527 kcal (2) G-P(sol) polarization free energy of solvation -26.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds