Wall clock time and date at job start Mon Mar 30 2020 01:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46803 * 299.99616 * 3 2 1 6 6 H 1.48494 * 109.47469 * 59.99440 * 3 2 1 7 7 C 1.38948 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00426 * 200.05008 * 7 2 1 9 9 N 1.37102 * 119.99707 * 20.05714 * 7 2 1 10 10 C 1.46501 * 120.00395 * 38.31426 * 9 7 2 11 11 C 1.50701 * 109.46839 * 90.00251 * 10 9 7 12 12 C 1.38234 * 120.00382 * 90.00009 * 11 10 9 13 13 C 1.38226 * 120.00298 * 179.97438 * 12 11 10 14 14 C 1.38238 * 120.00285 * 359.97438 * 13 12 11 15 15 C 1.38237 * 119.99511 * 0.27328 * 14 13 12 16 16 C 1.38230 * 120.00173 * 359.51543 * 15 14 13 17 17 C 1.34776 * 119.99644 * 218.31956 * 9 7 2 18 18 O 1.21301 * 119.99941 * 185.02072 * 17 9 7 19 19 C 1.50702 * 120.00182 * 5.01745 * 17 9 7 20 20 C 1.52998 * 109.47059 * 185.38410 * 19 17 9 21 21 F 1.39908 * 109.47183 * 65.00266 * 20 19 17 22 22 F 1.39901 * 109.47242 * 184.99774 * 20 19 17 23 23 H 0.97001 * 120.00057 * 354.98301 * 1 2 3 24 24 H 1.09003 * 109.46969 * 330.00460 * 10 9 7 25 25 H 1.08995 * 109.47219 * 210.00188 * 10 9 7 26 26 H 1.08003 * 119.99620 * 359.97438 * 12 11 10 27 27 H 1.08006 * 119.99844 * 180.02562 * 13 12 11 28 28 H 1.07994 * 119.99973 * 180.02562 * 14 13 12 29 29 H 1.08000 * 119.99368 * 179.72447 * 15 14 13 30 30 H 1.07997 * 120.00324 * 180.27042 * 16 15 14 31 31 H 1.09003 * 109.47012 * 305.38290 * 19 17 9 32 32 H 1.09003 * 109.47103 * 65.38742 * 19 17 9 33 33 H 1.08998 * 109.47576 * 305.00351 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0398 -1.2315 0.3212 9 7 1.3857 -2.3548 -0.4062 10 6 0.4504 -2.3228 -1.5333 11 6 1.2006 -2.5749 -2.8158 12 6 1.3576 -3.8667 -3.2822 13 6 2.0453 -4.0978 -4.4588 14 6 2.5755 -3.0372 -5.1694 15 6 2.4228 -1.7459 -4.7003 16 6 1.7315 -1.5143 -3.5260 17 6 1.6335 -3.5162 0.2311 18 8 1.1540 -4.5502 -0.1842 19 6 2.5064 -3.5304 1.4595 20 6 2.7355 -4.9759 1.9057 21 9 3.4654 -5.6565 0.9252 22 9 3.4494 -4.9850 3.1088 23 1 -0.4850 0.8368 0.0735 24 1 -0.0297 -1.3453 -1.5793 25 1 -0.3078 -3.0940 -1.3983 26 1 0.9430 -4.6953 -2.7273 27 1 2.1676 -5.1071 -4.8234 28 1 3.1123 -3.2179 -6.0889 29 1 2.8409 -0.9177 -5.2532 30 1 1.6084 -0.5051 -3.1618 31 1 3.4648 -3.0649 1.2296 32 1 2.0160 -2.9765 2.2601 33 1 1.7739 -5.4684 2.0500 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182964032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:02 Heat of formation + Delta-G solvation = -130.002412 kcal Electronic energy + Delta-G solvation = -20709.357572 eV Core-core repulsion = 17176.951381 eV Total energy + Delta-G solvation = -3532.406190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.88104 -47.88083 -40.81091 -39.56124 -36.80555 -33.75576 -33.12116 -31.75706 -31.68052 -27.67148 -26.61387 -24.41069 -23.33837 -22.17098 -21.06758 -19.20443 -18.60292 -18.33050 -17.52296 -17.21001 -17.12192 -16.42015 -16.08128 -15.86023 -15.64199 -15.54260 -14.82438 -14.40662 -14.26673 -14.20704 -14.02453 -13.62722 -13.52310 -13.19630 -13.10735 -12.84190 -12.76127 -12.52966 -12.07891 -11.93165 -11.84255 -11.71939 -11.11435 -10.53289 -9.74392 -9.57169 -9.50429 -8.34554 -6.11120 0.50611 0.57900 1.38399 1.48542 1.59159 1.94234 2.26573 2.59651 2.94001 3.03466 3.22397 3.40017 3.76516 3.90619 4.05873 4.13782 4.23875 4.37039 4.43300 4.60961 4.62268 4.74081 4.75302 4.87910 5.15004 5.22474 5.28784 5.47353 5.64845 5.66092 5.87643 5.98579 6.21453 6.36590 7.07946 7.47604 7.93295 8.68648 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.009246 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.516036 B = 3027.645310 C = 4678.734137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.435 5.435 10 C 0.153 3.847 11 C -0.102 4.102 12 C -0.121 4.121 13 C -0.130 4.130 14 C -0.123 4.123 15 C -0.127 4.127 16 C -0.114 4.114 17 C 0.462 3.538 18 O -0.621 6.621 19 C -0.163 4.163 20 C 0.283 3.717 21 F -0.215 7.215 22 F -0.208 7.208 23 H 0.275 0.725 24 H 0.098 0.902 25 H 0.044 0.956 26 H 0.106 0.894 27 H 0.140 0.860 28 H 0.153 0.847 29 H 0.145 0.855 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 -1.530 -3.719 5.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.188 4.188 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.484 4.484 8 H 0.111 0.889 9 N -0.151 5.151 10 C 0.030 3.970 11 C -0.104 4.104 12 C -0.140 4.140 13 C -0.148 4.148 14 C -0.141 4.141 15 C -0.145 4.145 16 C -0.133 4.133 17 C 0.252 3.748 18 O -0.509 6.509 19 C -0.203 4.203 20 C 0.229 3.771 21 F -0.197 7.197 22 F -0.190 7.190 23 H 0.085 0.915 24 H 0.116 0.884 25 H 0.063 0.937 26 H 0.124 0.876 27 H 0.158 0.842 28 H 0.171 0.829 29 H 0.163 0.837 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.029 -1.876 -3.972 5.961 hybrid contribution 0.120 0.842 0.370 0.927 sum 4.149 -1.034 -3.602 5.591 Atomic orbital electron populations 1.69920 1.07631 1.29076 1.45597 1.26074 0.95625 1.02438 0.94617 0.85178 0.79242 0.77865 0.78045 1.18406 1.20155 1.20310 1.19686 0.96513 0.84944 1.47207 0.88850 1.43521 1.39325 1.07015 1.25278 1.20266 0.90932 1.02776 0.83070 1.20443 0.99641 0.94001 0.96272 1.21228 0.99780 0.96053 0.96900 1.21394 0.98204 1.00396 0.94788 1.21442 0.99868 0.92068 1.00697 1.21414 0.98949 0.98262 0.95866 1.21119 0.98250 0.98245 0.95643 1.20520 0.84449 0.84179 0.85676 1.90531 1.57457 1.33161 1.69750 1.22349 1.03037 0.95843 0.99063 1.21587 0.90235 0.93133 0.72116 1.92934 1.80687 1.82095 1.63954 1.92947 1.81777 1.97394 1.46854 0.91467 0.88420 0.93724 0.87557 0.84186 0.82895 0.83676 0.87316 0.87586 0.85406 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.12 11.43 21.66 0.25 -43.87 16 2 C 0.02 0.80 4.98 84.93 0.42 1.22 16 3 Si 0.97 37.18 29.60 68.60 2.03 39.21 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 5 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.36 -16.98 8.57 84.04 0.72 -16.26 16 8 H 0.09 4.29 6.98 -2.91 -0.02 4.27 16 9 N -0.43 -21.09 2.50 -639.59 -1.60 -22.69 16 10 C 0.15 7.30 5.09 85.63 0.44 7.74 16 11 C -0.10 -4.38 5.46 -19.86 -0.11 -4.49 16 12 C -0.12 -4.83 9.57 22.27 0.21 -4.61 16 13 C -0.13 -4.16 10.05 22.27 0.22 -3.93 16 14 C -0.12 -3.45 10.05 22.27 0.22 -3.23 16 15 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 16 C -0.11 -4.38 9.70 22.27 0.22 -4.17 16 17 C 0.46 21.51 7.50 87.66 0.66 22.16 16 18 O -0.62 -30.94 14.43 -3.09 -0.04 -30.98 16 19 C -0.16 -6.12 4.83 29.85 0.14 -5.98 16 20 C 0.28 9.71 4.81 71.98 0.35 10.05 16 21 F -0.22 -8.37 16.86 44.97 0.76 -7.62 16 22 F -0.21 -6.68 17.34 44.97 0.78 -5.90 16 23 H 0.28 12.90 8.32 -92.71 -0.77 12.13 16 24 H 0.10 4.94 5.47 -2.39 -0.01 4.92 16 25 H 0.04 2.23 7.44 -2.39 -0.02 2.21 16 26 H 0.11 4.56 7.38 -2.91 -0.02 4.54 16 27 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 31 H 0.11 3.88 7.29 -2.39 -0.02 3.87 16 32 H 0.13 4.48 8.14 -2.39 -0.02 4.46 16 33 H 0.13 4.03 7.88 -2.39 -0.02 4.01 16 Total: -1.00 -57.68 295.26 7.02 -50.66 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.13 Total: 26.38 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 3.72 Total: -5.19 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.35 Total: -66.56 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.04 Total: -30.98 kcal Atomic # 9 Polarization: -15.05 SS G_CDS: 1.54 Total: -13.51 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -57.68 7.02 -50.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182964032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.347 kcal (2) G-P(sol) polarization free energy of solvation -57.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds