Wall clock time and date at job start Mon Mar 30 2020 02:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48497 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47015 * 299.99792 * 3 2 1 6 6 H 1.48501 * 109.47149 * 59.99445 * 3 2 1 7 7 C 1.38816 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99580 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65007 * 0.03651 * 9 7 2 11 11 C 1.54912 * 104.83218 * 204.09437 * 10 9 7 12 12 C 1.55405 * 101.66532 * 323.07638 * 11 10 9 13 13 H 1.09000 * 110.69411 * 277.04882 * 12 11 10 14 14 O 1.42897 * 110.85066 * 153.69865 * 12 11 10 15 15 C 1.35900 * 116.99849 * 161.78095 * 14 12 11 16 16 C 1.38709 * 120.02803 * 185.00928 * 15 14 12 17 17 C 1.38376 * 119.96726 * 179.67609 * 16 15 14 18 18 F 1.35102 * 119.98550 * 180.33765 * 17 16 15 19 19 C 1.38466 * 120.03061 * 0.60894 * 17 16 15 20 20 C 1.38455 * 120.05622 * 359.68360 * 19 17 16 21 21 F 1.35098 * 119.98333 * 180.02562 * 20 19 17 22 22 C 1.38379 * 120.03090 * 0.02562 * 20 19 17 23 23 C 1.47024 * 125.64680 * 179.97438 * 9 7 2 24 24 H 0.96994 * 119.99788 * 0.02562 * 1 2 3 25 25 H 1.08997 * 110.36801 * 322.93943 * 10 9 7 26 26 H 1.09000 * 110.36497 * 85.25739 * 10 9 7 27 27 H 1.08997 * 111.00483 * 81.06289 * 11 10 9 28 28 H 1.08999 * 111.00194 * 204.92288 * 11 10 9 29 29 H 1.07993 * 120.01421 * 359.96906 * 16 15 14 30 30 H 1.08001 * 119.97036 * 179.70364 * 19 17 16 31 31 H 1.08004 * 120.01603 * 180.02562 * 22 20 19 32 32 H 1.08994 * 109.88478 * 298.39532 * 23 9 7 33 33 H 1.09006 * 109.87815 * 59.40401 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 -0.0008 11 6 -0.4023 -3.9322 0.6111 12 6 0.7806 -4.7551 0.0292 13 1 0.5494 -5.1028 -0.9777 14 8 1.1046 -5.8539 0.8833 15 6 1.8372 -6.8619 0.3408 16 6 2.0989 -8.0057 1.0805 17 6 2.8393 -9.0340 0.5245 18 9 3.0886 -10.1511 1.2423 19 6 3.3295 -8.9164 -0.7651 20 6 3.0740 -7.7726 -1.5024 21 9 3.5526 -7.6595 -2.7607 22 6 2.3288 -6.7452 -0.9510 23 6 1.9317 -3.7275 0.0005 24 1 -0.4849 0.8400 -0.0004 25 1 -0.5999 -1.7587 0.6142 26 1 -0.5264 -2.4869 -1.0195 27 1 -0.3536 -3.8979 1.6994 28 1 -1.3593 -4.3327 0.2767 29 1 1.7210 -8.0955 2.0882 30 1 3.9112 -9.7176 -1.1964 31 1 2.1294 -5.8533 -1.5264 32 1 2.5286 -3.8643 -0.9011 33 1 2.5599 -3.8501 0.8829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225226153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:04 Heat of formation + Delta-G solvation = -86.895149 kcal Electronic energy + Delta-G solvation = -20031.214979 eV Core-core repulsion = 16500.678059 eV Total energy + Delta-G solvation = -3530.536919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.12049 -50.09112 -41.43566 -39.10777 -37.56996 -34.33266 -31.71156 -31.43212 -30.75900 -29.09702 -26.59635 -24.15645 -24.03354 -22.17380 -21.81275 -19.89463 -19.10640 -18.32494 -17.76550 -17.40681 -17.14509 -16.86115 -16.73158 -16.44361 -16.39268 -15.71590 -15.44543 -15.30161 -14.92736 -14.33286 -13.77282 -13.62481 -13.37933 -13.03705 -12.96222 -12.85480 -12.75710 -12.59533 -12.22498 -12.00404 -11.83905 -11.64353 -11.44081 -10.79218 -9.94407 -9.52900 -8.96177 -7.82179 -5.27441 -0.18300 -0.01320 1.47554 1.47843 1.58265 1.82076 2.25186 2.47418 2.80418 3.26237 3.29572 3.55396 3.61561 3.71724 3.80136 3.82216 3.89016 4.02252 4.08996 4.56187 4.64674 4.70384 4.76108 4.87861 4.90194 4.91297 4.95867 5.03093 5.42598 5.53649 5.56416 5.73807 6.18275 6.26766 7.06004 7.70829 8.32675 9.20174 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.030653 B = 0.004192 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.226295 B = 6678.222592 C = 7054.313304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.623 5.623 10 C 0.152 3.848 11 C -0.120 4.120 12 C 0.083 3.917 13 H 0.100 0.900 14 O -0.297 6.297 15 C 0.182 3.818 16 C -0.199 4.199 17 C 0.170 3.830 18 F -0.124 7.124 19 C -0.223 4.223 20 C 0.165 3.835 21 F -0.131 7.131 22 C -0.260 4.260 23 C 0.114 3.886 24 H 0.250 0.750 25 H 0.083 0.917 26 H 0.002 0.998 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.146 0.854 32 H 0.033 0.967 33 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.070 -17.926 -0.439 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.809 3.191 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.350 5.350 10 C 0.028 3.972 11 C -0.158 4.158 12 C 0.027 3.973 13 H 0.118 0.882 14 O -0.209 6.209 15 C 0.135 3.865 16 C -0.218 4.218 17 C 0.150 3.850 18 F -0.103 7.103 19 C -0.242 4.242 20 C 0.145 3.855 21 F -0.110 7.110 22 C -0.280 4.280 23 C -0.012 4.012 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.020 0.980 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.180 0.820 30 H 0.188 0.812 31 H 0.164 0.836 32 H 0.051 0.949 33 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.997 -17.733 -0.262 17.986 hybrid contribution 0.552 1.069 -0.435 1.279 sum 3.550 -16.664 -0.697 17.052 Atomic orbital electron populations 1.69989 1.06115 1.25267 1.58173 1.25607 0.96670 1.00856 1.02196 0.84977 0.78007 0.79223 0.76892 1.19348 1.21686 1.21611 1.19462 0.91026 0.83557 1.43238 0.90272 1.44653 1.02846 1.00419 1.87132 1.21816 0.83981 0.94002 0.97428 1.23059 0.96679 0.94747 1.01319 1.23551 0.95707 0.83764 0.94310 0.88179 1.86175 1.66473 1.28258 1.40043 1.18430 0.89712 0.87851 0.90485 1.20440 1.06017 0.92011 1.03363 1.16714 0.96315 0.82868 0.89121 1.91551 1.92198 1.49158 1.77352 1.21034 1.08364 1.00310 0.94527 1.16929 0.94789 0.94023 0.79760 1.91536 1.85964 1.96220 1.37261 1.21437 1.06752 1.02366 0.97409 1.21867 0.94932 0.85702 0.98688 0.94028 0.89922 0.98014 0.90851 0.88007 0.81978 0.81159 0.83615 0.94912 0.95344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.85 10.09 21.65 0.22 -54.63 16 2 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 3 Si 0.98 44.92 29.55 68.60 2.03 46.95 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.24 -13.57 10.27 84.03 0.86 -12.71 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.62 -31.63 3.39 -691.98 -2.35 -33.98 16 10 C 0.15 7.20 5.89 86.86 0.51 7.71 16 11 C -0.12 -4.23 6.82 32.07 0.22 -4.01 16 12 C 0.08 2.73 2.78 31.87 0.09 2.82 16 13 H 0.10 2.94 6.61 -2.39 -0.02 2.92 16 14 O -0.30 -8.97 9.88 -92.42 -0.91 -9.88 16 15 C 0.18 4.75 6.62 22.49 0.15 4.89 16 16 C -0.20 -4.39 9.96 22.42 0.22 -4.17 16 17 C 0.17 3.42 7.30 22.36 0.16 3.59 16 18 F -0.12 -2.43 17.27 44.97 0.78 -1.66 16 19 C -0.22 -4.31 10.00 22.38 0.22 -4.09 16 20 C 0.16 3.77 7.30 22.36 0.16 3.94 16 21 F -0.13 -3.14 17.27 44.97 0.78 -2.36 16 22 C -0.26 -6.62 8.75 22.41 0.20 -6.42 16 23 C 0.11 4.65 6.49 86.73 0.56 5.21 16 24 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 25 H 0.08 4.46 5.87 -2.39 -0.01 4.45 16 26 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 28 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.15 3.87 5.30 -2.91 -0.02 3.85 16 32 H 0.03 1.30 7.41 -2.39 -0.02 1.28 16 33 H 0.03 1.20 8.06 -2.38 -0.02 1.19 16 Total: -1.00 -60.88 286.36 5.51 -55.38 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.14 Total: 6.32 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 3.83 Total: -6.13 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -2.13 Total: -88.61 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.91 Total: -9.88 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 1.55 Total: -4.02 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -60.88 5.51 -55.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225226153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.519 kcal (2) G-P(sol) polarization free energy of solvation -60.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds