Wall clock time and date at job start Mon Mar 30 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48500 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47301 * 299.99673 * 3 2 1 6 6 H 1.48504 * 109.47462 * 60.00055 * 3 2 1 7 7 C 1.38805 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00358 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.65031 * 0.04254 * 9 7 2 11 11 C 1.54910 * 104.83047 * 204.09590 * 10 9 7 12 12 C 1.55157 * 101.57987 * 322.98566 * 11 10 9 13 13 H 1.09004 * 110.86884 * 277.07172 * 12 11 10 14 14 O 1.42899 * 110.72154 * 153.87270 * 12 11 10 15 15 C 1.35941 * 117.00045 * 161.51205 * 14 12 11 16 16 C 1.38728 * 120.01752 * 185.34069 * 15 14 12 17 17 C 1.38161 * 120.01466 * 179.97438 * 16 15 14 18 18 C 1.38414 * 120.05443 * 359.97438 * 17 16 15 19 19 F 1.35096 * 119.98035 * 180.02562 * 18 17 16 20 20 C 1.38655 * 120.03808 * 0.02562 * 18 17 16 21 21 F 1.35097 * 120.00505 * 180.02562 * 20 18 17 22 22 C 1.38358 * 119.98318 * 0.02562 * 20 18 17 23 23 C 1.47020 * 125.64708 * 179.97438 * 9 7 2 24 24 H 0.96998 * 119.99989 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.36389 * 322.92651 * 10 9 7 26 26 H 1.08996 * 110.37086 * 85.24728 * 10 9 7 27 27 H 1.08999 * 111.00024 * 204.91452 * 11 10 9 28 28 H 1.08995 * 111.01108 * 81.06150 * 11 10 9 29 29 H 1.08006 * 119.99265 * 0.25598 * 16 15 14 30 30 H 1.08003 * 119.97518 * 179.97438 * 17 16 15 31 31 H 1.07999 * 120.02125 * 180.02562 * 22 20 18 32 32 H 1.09001 * 109.87971 * 59.56057 * 23 9 7 33 33 H 1.09005 * 109.88825 * 298.40016 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1415 -2.5332 -0.0009 11 6 -0.4021 -3.9322 0.6111 12 6 0.7784 -4.7524 0.0272 13 1 0.5489 -5.1004 -0.9800 14 8 1.0996 -5.8534 0.8796 15 6 1.8266 -6.8644 0.3344 16 6 2.0791 -8.0129 1.0705 17 6 2.8175 -9.0407 0.5161 18 6 3.3057 -8.9260 -0.7740 19 9 4.0271 -9.9321 -1.3148 20 6 3.0546 -7.7791 -1.5117 21 9 3.5309 -7.6681 -2.7710 22 6 2.3162 -6.7485 -0.9577 23 6 1.9318 -3.7274 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5999 -1.7588 0.6142 26 1 -0.5264 -2.4869 -1.0196 27 1 -1.3592 -4.3327 0.2767 28 1 -0.3535 -3.8979 1.6994 29 1 1.6945 -8.1056 2.0755 30 1 3.0141 -9.9343 1.0899 31 1 2.1200 -5.8550 -1.5319 32 1 2.5577 -3.8510 0.8843 33 1 2.5288 -3.8642 -0.9011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225312965.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:49 Heat of formation + Delta-G solvation = -70.627895 kcal Electronic energy + Delta-G solvation = -20083.503873 eV Core-core repulsion = 16553.672355 eV Total energy + Delta-G solvation = -3529.831518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.50072 -48.57101 -40.27256 -37.83827 -36.10936 -32.42058 -31.05253 -29.86893 -29.04407 -27.48247 -24.72781 -23.42199 -22.64455 -20.45797 -20.38016 -18.61971 -17.58177 -17.45659 -16.79568 -16.51200 -16.35080 -15.21493 -14.99082 -14.87641 -14.53925 -14.32249 -14.25213 -13.83958 -13.52553 -13.03397 -12.59220 -12.33148 -11.97714 -11.81478 -11.53761 -11.36095 -11.06627 -10.87026 -10.56861 -10.31686 -10.10362 -9.93991 -9.70659 -9.23133 -8.75773 -8.23061 -6.97140 -5.75829 -3.18550 0.80423 0.92321 3.15085 3.25194 3.35426 3.41365 3.43692 3.72614 4.19813 4.40811 4.43631 4.76298 4.82178 5.07194 5.15782 5.25332 5.40473 5.45791 5.59392 5.66511 5.69306 5.83034 6.00031 6.13298 6.29047 6.35864 6.40975 6.47689 6.60980 7.33417 7.40861 7.52151 7.72307 8.23111 9.10650 9.70769 10.32777 11.28675 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.004206 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.270678 B = 6656.169398 C = 7121.812067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.151 3.849 11 C -0.133 4.133 12 C 0.065 3.935 13 H 0.080 0.920 14 O -0.293 6.293 15 C 0.165 3.835 16 C -0.140 4.140 17 C -0.086 4.086 18 C 0.016 3.984 19 F -0.135 7.135 20 C 0.112 3.888 21 F -0.127 7.127 22 C -0.221 4.221 23 C 0.116 3.884 24 H 0.253 0.747 25 H 0.116 0.884 26 H 0.018 0.982 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.037 0.963 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -16.413 0.902 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.027 3.973 11 C -0.172 4.172 12 C 0.009 3.991 13 H 0.097 0.903 14 O -0.205 6.205 15 C 0.118 3.882 16 C -0.159 4.159 17 C -0.104 4.104 18 C -0.005 4.005 19 F -0.113 7.113 20 C 0.091 3.909 21 F -0.105 7.105 22 C -0.241 4.241 23 C -0.010 4.010 24 H 0.064 0.936 25 H 0.133 0.867 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.055 0.945 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.798 -16.176 1.022 16.308 hybrid contribution 0.787 0.722 -0.718 1.287 sum 2.585 -15.454 0.303 15.672 Atomic orbital electron populations 1.69756 1.04942 1.24944 1.57442 1.24798 0.95768 0.97820 1.02037 0.85959 0.78686 0.83281 0.77328 1.20451 1.21634 1.21583 1.19134 0.90637 0.82145 1.43442 0.90249 1.44377 1.01863 0.99386 1.87142 1.22031 0.84848 0.91800 0.98655 1.23208 0.94658 0.97572 1.01752 1.23831 0.97939 0.84089 0.93274 0.90257 1.86231 1.66180 1.28035 1.40080 1.18845 0.90282 0.88650 0.90463 1.20372 1.02614 0.91261 1.01628 1.20816 0.97004 1.00011 0.92614 1.17497 1.02214 0.86651 0.94103 1.91496 1.75689 1.58164 1.86000 1.17374 0.98562 0.94365 0.80564 1.91535 1.86140 1.96192 1.36644 1.21340 1.04372 1.01116 0.97236 1.21758 0.93723 0.86589 0.98964 0.93573 0.86693 0.96419 0.91267 0.90571 0.83446 0.83214 0.82706 0.94490 0.95527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.09 55.49 0.56 -25.56 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.23 -6.18 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.03 3.39 -170.08 -0.58 -15.61 16 10 C 0.15 3.51 5.89 -2.53 -0.01 3.50 16 11 C -0.13 -2.41 6.81 -24.58 -0.17 -2.58 16 12 C 0.06 1.10 2.77 -24.90 -0.07 1.03 16 13 H 0.08 1.24 6.58 -51.93 -0.34 0.90 16 14 O -0.29 -4.57 9.88 -19.55 -0.19 -4.76 16 15 C 0.17 2.24 6.62 -39.24 -0.26 1.98 16 16 C -0.14 -1.52 9.98 -39.43 -0.39 -1.91 16 17 C -0.09 -0.86 10.02 -39.54 -0.40 -1.25 16 18 C 0.02 0.19 7.30 -39.36 -0.29 -0.09 16 19 F -0.13 -1.74 17.18 2.25 0.04 -1.70 16 20 C 0.11 1.52 7.30 -39.38 -0.29 1.23 16 21 F -0.13 -1.84 17.18 2.25 0.04 -1.80 16 22 C -0.22 -3.04 8.75 -39.38 -0.34 -3.39 16 23 C 0.12 2.38 6.51 -3.07 -0.02 2.36 16 24 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.12 3.00 5.87 -51.93 -0.30 2.69 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.16 2.18 5.31 -52.49 -0.28 1.90 16 32 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 33 H 0.03 0.54 7.42 -51.93 -0.39 0.15 16 LS Contribution 286.24 15.07 4.31 4.31 Total: -1.00 -29.08 286.24 -6.72 -35.80 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -3.39 Total: -1.53 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.49 Total: -5.80 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.02 Total: -41.16 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.19 Total: -4.76 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.08 Total: -3.50 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.08 -6.72 -35.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225312965.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.829 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds