Wall clock time and date at job start Mon Mar 30 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00128 * 2 1 4 4 H 1.48500 * 109.46786 * 269.99719 * 3 2 1 5 5 H 1.48497 * 109.47401 * 29.99823 * 3 2 1 6 6 H 1.48502 * 109.47040 * 150.00030 * 3 2 1 7 7 C 1.38817 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99828 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00337 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64629 * 0.02562 * 9 7 2 11 11 C 1.54911 * 104.82843 * 155.84116 * 10 9 7 12 12 C 1.55156 * 101.58482 * 37.01250 * 11 10 9 13 13 H 1.09000 * 110.71946 * 83.03701 * 12 11 10 14 14 O 1.42894 * 110.71991 * 206.13532 * 12 11 10 15 15 C 1.35948 * 116.99926 * 203.80567 * 14 12 11 16 16 C 1.38729 * 120.01914 * 354.49444 * 15 14 12 17 17 C 1.38168 * 120.01523 * 180.23186 * 16 15 14 18 18 C 1.38402 * 120.04956 * 359.49842 * 17 16 15 19 19 F 1.35106 * 119.98004 * 180.25191 * 18 17 16 20 20 C 1.38656 * 120.04567 * 0.50462 * 18 17 16 21 21 F 1.35098 * 120.01006 * 179.77390 * 20 18 17 22 22 C 1.38363 * 119.98089 * 359.74486 * 20 18 17 23 23 C 1.47321 * 125.61661 * 180.16594 * 9 7 2 24 24 H 0.96992 * 119.99625 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.36414 * 37.00537 * 10 9 7 26 26 H 1.09002 * 110.46136 * 274.72381 * 10 9 7 27 27 H 1.08996 * 111.00507 * 278.93187 * 11 10 9 28 28 H 1.09010 * 111.00227 * 155.08309 * 11 10 9 29 29 H 1.08007 * 119.99229 * 359.96147 * 16 15 14 30 30 H 1.07998 * 119.97115 * 179.74487 * 17 16 15 31 31 H 1.07994 * 120.02533 * 180.02562 * 22 20 18 32 32 H 1.09004 * 110.06543 * 61.74636 * 23 9 7 33 33 H 1.08996 * 109.84599 * 300.48344 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 -0.0005 11 6 -0.4012 -3.9321 -0.6130 12 6 0.7783 -4.7525 -0.0273 13 1 0.5438 -5.1010 0.9785 14 8 1.1009 -5.8533 -0.8794 15 6 1.7295 -6.9138 -0.3064 16 6 2.1314 -6.8487 1.0199 17 6 2.7746 -7.9248 1.6008 18 6 3.0093 -9.0724 0.8635 19 9 3.6338 -10.1256 1.4345 20 6 2.6087 -9.1399 -0.4622 21 9 2.8423 -10.2587 -1.1825 22 6 1.9691 -8.0613 -1.0470 23 6 1.9337 -3.7299 0.0045 24 1 -0.4849 0.8400 0.0004 25 1 -0.5988 -1.7587 -0.6163 26 1 -0.5298 -2.4865 1.0169 27 1 -0.3508 -3.8977 -1.7012 28 1 -1.3589 -4.3327 -0.2803 29 1 1.9454 -5.9550 1.5972 30 1 3.0908 -7.8718 2.6321 31 1 1.6564 -8.1133 -2.0794 32 1 2.5270 -3.8690 0.9084 33 1 2.5628 -3.8537 -0.8770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225312967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:53 Heat of formation + Delta-G solvation = -69.768326 kcal Electronic energy + Delta-G solvation = -19940.780806 eV Core-core repulsion = 16410.986562 eV Total energy + Delta-G solvation = -3529.794244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.54354 -48.60590 -40.28615 -37.81164 -36.10532 -32.45563 -31.12379 -29.76791 -29.05859 -27.48656 -24.70633 -23.53304 -22.67509 -20.39062 -20.37717 -18.67152 -17.58964 -17.39402 -16.95891 -16.44456 -16.33291 -15.21769 -15.03662 -14.89478 -14.56148 -14.55588 -14.12553 -13.90223 -13.44295 -12.90834 -12.60216 -12.44307 -12.07048 -11.80527 -11.67339 -11.22773 -11.07591 -10.84822 -10.56855 -10.32925 -10.13604 -9.92939 -9.71521 -9.22604 -8.76058 -8.24973 -6.98044 -5.76369 -3.19082 0.77658 0.92471 3.03234 3.23792 3.35176 3.40424 3.42127 3.77767 4.25709 4.40352 4.45551 4.69187 4.93980 4.99413 5.14405 5.15033 5.39871 5.44749 5.59126 5.61704 5.67817 5.86239 6.00843 6.12519 6.28799 6.35389 6.40621 6.47021 6.60051 7.32500 7.41180 7.50647 7.71787 8.22467 9.09899 9.69930 10.32117 11.28046 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.039330 B = 0.003800 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.747161 B = 7365.916546 C = 7652.832163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.917 3.083 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.136 4.136 12 C 0.065 3.935 13 H 0.082 0.918 14 O -0.295 6.295 15 C 0.165 3.835 16 C -0.191 4.191 17 C -0.081 4.081 18 C 0.017 3.983 19 F -0.135 7.135 20 C 0.107 3.893 21 F -0.127 7.127 22 C -0.170 4.170 23 C 0.117 3.883 24 H 0.254 0.746 25 H 0.115 0.885 26 H 0.018 0.982 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.028 0.972 33 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 -15.289 1.302 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.027 3.973 11 C -0.174 4.174 12 C 0.010 3.990 13 H 0.099 0.901 14 O -0.207 6.207 15 C 0.118 3.882 16 C -0.210 4.210 17 C -0.100 4.100 18 C -0.004 4.004 19 F -0.113 7.113 20 C 0.087 3.913 21 F -0.105 7.105 22 C -0.190 4.190 23 C -0.009 4.009 24 H 0.065 0.935 25 H 0.132 0.868 26 H 0.036 0.964 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.168 0.832 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.046 0.954 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.723 -15.094 1.100 15.232 hybrid contribution 0.706 0.431 0.251 0.864 sum 2.429 -14.664 1.351 14.925 Atomic orbital electron populations 1.69747 1.04944 1.25058 1.57350 1.24800 0.95765 0.97814 1.02041 0.86031 0.78524 0.83009 0.77681 1.21449 1.21547 1.20657 1.19086 0.90603 0.82162 1.43574 0.90304 1.44435 1.01820 0.99362 1.87194 1.22013 0.84823 0.91798 0.98629 1.23234 0.94737 0.97676 1.01779 1.23849 0.97866 0.83995 0.93335 0.90067 1.86214 1.71111 1.24893 1.38459 1.18737 0.91039 0.87508 0.90931 1.21400 1.03623 1.00899 0.95039 1.20851 0.97741 0.90694 1.00670 1.17483 1.04502 0.87282 0.91088 1.91500 1.80400 1.54923 1.84512 1.17215 1.01304 0.84305 0.88463 1.91527 1.92489 1.49180 1.77308 1.20165 1.05547 0.90908 1.02360 1.21766 0.93666 0.86456 0.99013 0.93524 0.86752 0.96433 0.90619 0.91314 0.83200 0.83449 0.82959 0.95381 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.91 10.09 55.49 0.56 -25.35 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.60 -14.79 3.40 -169.83 -0.58 -15.37 16 10 C 0.15 3.48 5.89 -2.53 -0.01 3.46 16 11 C -0.14 -2.43 6.81 -24.58 -0.17 -2.60 16 12 C 0.07 1.08 2.74 -24.90 -0.07 1.02 16 13 H 0.08 1.19 6.26 -51.93 -0.32 0.87 16 14 O -0.29 -4.59 9.87 -19.58 -0.19 -4.78 16 15 C 0.17 2.23 6.67 -39.24 -0.26 1.97 16 16 C -0.19 -2.31 8.89 -39.43 -0.35 -2.66 16 17 C -0.08 -0.88 10.02 -39.55 -0.40 -1.28 16 18 C 0.02 0.20 7.30 -39.37 -0.29 -0.08 16 19 F -0.13 -1.72 17.18 2.25 0.04 -1.69 16 20 C 0.11 1.35 7.30 -39.38 -0.29 1.06 16 21 F -0.13 -1.63 17.18 2.25 0.04 -1.59 16 22 C -0.17 -2.11 9.96 -39.38 -0.39 -2.50 16 23 C 0.12 2.34 6.82 -2.90 -0.02 2.32 16 24 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.11 2.96 5.87 -51.93 -0.31 2.66 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.15 1.75 5.60 -52.48 -0.29 1.45 16 30 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.03 0.54 7.79 -51.93 -0.40 0.13 16 33 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 LS Contribution 287.01 15.07 4.33 4.33 Total: -1.00 -28.56 287.01 -6.73 -35.30 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.41 Total: -1.38 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.50 Total: -5.89 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.02 Total: -40.71 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.19 Total: -4.78 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.08 Total: -3.28 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.56 -6.73 -35.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225312967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.471 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds