Wall clock time and date at job start Mon Mar 30 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48507 * 109.47228 * 240.00408 * 3 2 1 5 5 H 1.48501 * 109.47301 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47140 * 120.00479 * 3 2 1 7 7 C 1.40177 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.40804 * 119.99859 * 359.97438 * 7 2 1 10 10 N 1.33969 * 120.29004 * 10.31256 * 9 7 2 11 11 C 1.31597 * 119.90178 * 179.97438 * 10 9 7 12 12 C 1.39192 * 120.50153 * 359.97438 * 11 10 9 13 13 N 1.32005 * 120.58869 * 0.02562 * 12 11 10 14 14 C 1.32850 * 120.07966 * 359.97438 * 13 12 11 15 15 C 1.47817 * 120.25025 * 179.97438 * 14 13 12 16 16 C 1.39807 * 120.08326 * 43.83886 * 15 14 13 17 17 C 1.38010 * 120.13887 * 179.74127 * 16 15 14 18 18 C 1.38152 * 120.30586 * 0.51735 * 17 16 15 19 19 C 1.39693 * 120.16297 * 359.76405 * 18 17 16 20 20 C 1.47860 * 120.06920 * 179.97438 * 19 18 17 21 21 N 1.34773 * 120.00175 * 0.02562 * 20 19 18 22 22 O 1.21554 * 120.00396 * 180.02562 * 20 19 18 23 23 C 1.39300 * 119.85748 * 359.97438 * 19 18 17 24 24 H 0.96998 * 119.99193 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.75049 * 180.27683 * 11 10 9 26 26 H 1.08004 * 119.71005 * 179.97438 * 12 11 10 27 27 H 1.08000 * 119.92746 * 0.02562 * 16 15 14 28 28 H 1.07997 * 119.84883 * 180.24190 * 17 16 15 29 29 H 1.07999 * 119.91590 * 179.74103 * 18 17 16 30 30 H 0.97004 * 120.00233 * 0.02562 * 21 20 19 31 31 H 0.97000 * 120.00544 * 180.02562 * 21 20 19 32 32 H 1.08006 * 120.14566 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6963 -1.2126 5 1 1.2760 2.7465 0.0006 6 1 3.0947 1.6962 1.2124 7 6 2.0076 -1.2140 -0.0005 8 1 3.0876 -1.2141 -0.0010 9 6 1.3035 -2.4334 -0.0005 10 7 -0.0200 -2.4493 -0.2071 11 6 -0.6704 -3.5934 -0.2060 12 6 0.0065 -4.7906 0.0079 13 7 1.3104 -4.7976 0.2135 14 6 1.9900 -3.6562 0.2172 15 6 3.4501 -3.6596 0.4476 16 6 4.2582 -4.6050 -0.1912 17 6 5.6222 -4.6058 0.0189 18 6 6.1972 -3.6809 0.8689 19 6 5.4011 -2.7343 1.5182 20 6 6.0187 -1.7456 2.4278 21 7 7.3510 -1.7568 2.6309 22 8 5.3248 -0.9228 2.9926 23 6 4.0243 -2.7238 1.3069 24 1 -0.4849 0.8401 0.0004 25 1 -1.7367 -3.6038 -0.3773 26 1 -0.5401 -5.7222 0.0066 27 1 3.8145 -5.3332 -0.8539 28 1 6.2424 -5.3358 -0.4799 29 1 7.2648 -3.6899 1.0319 30 1 7.9049 -2.4132 2.1799 31 1 7.7562 -1.1085 3.2279 32 1 3.4044 -1.9942 1.8068 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239880726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:40 Heat of formation + Delta-G solvation = 0.913897 kcal Electronic energy + Delta-G solvation = -19556.148485 eV Core-core repulsion = 16480.108438 eV Total energy + Delta-G solvation = -3076.040047 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28687 -40.62126 -38.91072 -36.06540 -34.99998 -34.14211 -33.13140 -31.91003 -30.38294 -28.09699 -25.34906 -24.67609 -23.90337 -22.56281 -21.20688 -19.63729 -19.06397 -18.02865 -17.69100 -16.96404 -16.87287 -16.58530 -15.93355 -15.78886 -15.51171 -15.13948 -14.75186 -14.55550 -14.41763 -13.59590 -13.45554 -13.34237 -13.06857 -12.64591 -12.52711 -12.14089 -11.96480 -11.68641 -11.54087 -11.16816 -11.07604 -10.70540 -10.17277 -9.80712 -9.48271 -9.21000 -8.49489 -6.67240 -0.09699 0.22998 0.74677 1.13989 1.30590 1.41733 1.48169 1.93993 2.11414 2.56377 2.69164 2.99193 3.66065 3.75688 3.94091 4.09214 4.13988 4.21064 4.36747 4.43739 4.63050 4.67853 4.82429 4.95723 5.06200 5.15067 5.19518 5.39509 5.52132 5.73909 5.78979 5.90917 6.02897 6.07896 6.41398 6.48914 6.65798 7.25457 7.35537 7.84179 8.19289 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.009049 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.190424 B = 3093.628181 C = 4729.547904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.028 3.972 3 Si 0.973 3.027 4 H -0.250 1.250 5 H -0.256 1.256 6 H -0.267 1.267 7 C -0.423 4.423 8 H 0.098 0.902 9 C 0.190 3.810 10 N -0.488 5.488 11 C 0.076 3.924 12 C -0.117 4.117 13 N -0.423 5.423 14 C -0.047 4.047 15 C -0.014 4.014 16 C -0.087 4.087 17 C -0.117 4.117 18 C -0.079 4.079 19 C -0.158 4.158 20 C 0.561 3.439 21 N -0.822 5.822 22 O -0.593 6.593 23 C -0.064 4.064 24 H 0.288 0.712 25 H 0.162 0.838 26 H 0.166 0.834 27 H 0.122 0.878 28 H 0.171 0.829 29 H 0.175 0.825 30 H 0.419 0.581 31 H 0.413 0.587 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.202 -4.192 -0.005 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.174 1.174 5 H -0.180 1.180 6 H -0.192 1.192 7 C -0.453 4.453 8 H 0.116 0.884 9 C 0.065 3.935 10 N -0.205 5.205 11 C -0.095 4.095 12 C -0.278 4.278 13 N -0.136 5.136 14 C -0.193 4.193 15 C -0.016 4.016 16 C -0.107 4.107 17 C -0.134 4.134 18 C -0.097 4.097 19 C -0.161 4.161 20 C 0.348 3.652 21 N -0.388 5.388 22 O -0.474 6.474 23 C -0.084 4.084 24 H 0.099 0.901 25 H 0.179 0.821 26 H 0.183 0.817 27 H 0.140 0.860 28 H 0.189 0.811 29 H 0.193 0.807 30 H 0.252 0.748 31 H 0.245 0.755 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.414 -3.586 0.260 13.887 hybrid contribution -0.315 0.669 0.133 0.751 sum 13.099 -2.917 0.393 13.426 Atomic orbital electron populations 1.70074 1.08793 1.30209 1.26991 1.26994 0.95734 1.04511 0.92438 0.85373 0.79160 0.75884 0.80341 1.17384 1.17980 1.19202 1.20034 0.95350 0.89810 1.40129 0.88417 1.19625 0.89518 0.93605 0.90737 1.69446 1.08074 1.26525 1.16476 1.24089 1.01410 0.89949 0.94013 1.23166 0.91109 0.99233 1.14289 1.67756 1.09076 1.29053 1.07699 1.20512 0.94361 0.90134 1.14313 1.18333 0.90399 0.96091 0.96763 1.21607 0.94589 0.96612 0.97859 1.21378 0.93453 0.99812 0.98805 1.21653 1.00779 0.92600 0.94698 1.19820 0.93544 1.00073 1.02657 1.18452 0.83488 0.82895 0.80383 1.43417 1.06162 1.38780 1.50413 1.90816 1.63716 1.41160 1.51711 1.21317 0.94607 0.96888 0.95632 0.90095 0.82050 0.81664 0.85963 0.81124 0.80728 0.74750 0.75465 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.94 11.54 21.86 0.25 -39.69 16 2 C 0.03 1.44 5.49 85.34 0.47 1.91 16 3 Si 0.97 40.10 29.56 68.60 2.03 42.12 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.42 -23.36 7.45 23.37 0.17 -23.19 16 8 H 0.10 5.21 5.37 -2.91 -0.02 5.19 16 9 C 0.19 10.77 6.51 40.36 0.26 11.03 16 10 N -0.49 -27.51 8.12 -187.86 -1.53 -29.03 16 11 C 0.08 3.63 11.22 84.96 0.95 4.58 16 12 C -0.12 -5.31 11.22 84.90 0.95 -4.36 16 13 N -0.42 -20.96 10.30 -182.29 -1.88 -22.83 16 14 C -0.05 -2.46 6.42 42.44 0.27 -2.19 16 15 C -0.01 -0.64 5.28 -20.08 -0.11 -0.74 16 16 C -0.09 -3.06 9.66 22.60 0.22 -2.84 16 17 C -0.12 -2.85 10.02 22.20 0.22 -2.63 16 18 C -0.08 -1.80 9.54 22.60 0.22 -1.59 16 19 C -0.16 -5.26 5.87 -20.12 -0.12 -5.38 16 20 C 0.56 18.06 8.05 86.79 0.70 18.76 16 21 N -0.82 -14.81 8.82 -175.59 -1.55 -16.36 16 22 O -0.59 -25.75 17.18 -3.88 -0.07 -25.81 16 23 C -0.06 -2.80 7.08 22.81 0.16 -2.64 16 24 H 0.29 13.95 8.29 -92.71 -0.77 13.18 16 25 H 0.16 6.45 8.06 -2.91 -0.02 6.43 16 26 H 0.17 6.11 8.06 -2.91 -0.02 6.08 16 27 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 28 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 29 H 0.18 1.93 6.39 -2.91 -0.02 1.91 16 30 H 0.42 4.00 6.85 -92.71 -0.64 3.36 16 31 H 0.41 6.13 8.93 -92.71 -0.83 5.30 16 32 H 0.10 5.36 6.32 -2.91 -0.02 5.34 16 Total: -1.00 -77.58 285.02 1.38 -76.20 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.26 Total: 24.68 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 4.38 Total: -9.27 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -4.70 Total: -107.92 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.07 Total: -25.81 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.12 kcal Total: -77.58 1.38 -76.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239880726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.111 kcal (2) G-P(sol) polarization free energy of solvation -77.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds