Wall clock time and date at job start Mon Mar 30 2020 01:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81391 * 109.47290 * 2 1 4 4 O 1.42108 * 110.54348 * 64.31353 * 3 2 1 5 5 O 1.42099 * 110.54471 * 287.56462 * 3 2 1 6 6 N 1.65598 * 104.44972 * 175.93750 * 3 2 1 7 7 C 1.39677 * 120.00025 * 63.62853 * 6 3 2 8 8 C 1.38909 * 120.07582 * 254.97886 * 7 6 3 9 9 C 1.38101 * 119.92628 * 179.76780 * 8 7 6 10 10 C 1.38286 * 120.07165 * 0.50759 * 9 8 7 11 11 C 1.50695 * 119.92702 * 179.72205 * 10 9 8 12 12 C 1.50701 * 109.47203 * 270.02539 * 11 10 9 13 13 H 1.07998 * 120.00073 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99963 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00270 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47166 * 89.99781 * 16 14 12 18 18 H 1.48496 * 109.47448 * 209.99999 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00475 * 16 14 12 20 20 C 1.38288 * 120.15245 * 359.74664 * 10 9 8 21 21 C 1.38108 * 120.07239 * 0.02562 * 20 10 9 22 22 H 1.09004 * 109.47342 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46853 * 299.99675 * 1 2 3 24 24 H 1.08993 * 109.47355 * 59.99271 * 1 2 3 25 25 H 1.08999 * 109.46596 * 239.99886 * 2 1 3 26 26 H 1.08999 * 109.46928 * 120.00856 * 2 1 3 27 27 H 0.97000 * 119.99907 * 243.62923 * 6 3 2 28 28 H 1.07998 * 120.03300 * 0.02562 * 8 7 6 29 29 H 1.07995 * 119.96268 * 180.25375 * 9 8 7 30 30 H 1.09005 * 109.47141 * 30.02343 * 11 10 9 31 31 H 1.08997 * 109.47672 * 150.02735 * 11 10 9 32 32 H 0.97005 * 119.99751 * 180.02562 * 15 14 12 33 33 H 1.08002 * 119.96375 * 180.02562 * 20 10 9 34 34 H 1.08003 * 120.03486 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7572 2.3726 1.1992 5 8 1.9224 2.3142 -1.2686 6 7 3.7805 1.5665 0.1136 7 6 4.4997 0.9452 -0.9100 8 6 4.9969 -0.3394 -0.7309 9 6 5.7033 -0.9527 -1.7468 10 6 5.9250 -0.2852 -2.9375 11 6 6.7017 -0.9551 -4.0415 12 6 8.1679 -0.6439 -3.8846 13 1 8.5036 -0.0228 -3.0673 14 6 9.0807 -1.1521 -4.7843 15 7 8.6719 -1.9089 -5.7793 16 14 10.8980 -0.7658 -4.5902 17 1 11.5358 -1.8009 -3.7376 18 1 11.5473 -0.7555 -5.9256 19 1 11.0556 0.5662 -3.9528 20 6 5.4360 0.9957 -3.1172 21 6 4.7246 1.6130 -2.1071 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5140 0.8899 27 1 4.2452 1.9138 0.8910 28 1 4.8275 -0.8596 0.2003 29 1 6.0866 -1.9529 -1.6097 30 1 6.5515 -2.0335 -3.9888 31 1 6.3534 -0.5864 -5.0063 32 1 9.3142 -2.2668 -6.4120 33 1 5.6105 1.5140 -4.0485 34 1 4.3433 2.6136 -2.2480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:12 Heat of formation + Delta-G solvation = -83.452424 kcal Electronic energy + Delta-G solvation = -18032.357187 eV Core-core repulsion = 15055.809942 eV Total energy + Delta-G solvation = -2976.547245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.41305 -38.17491 -37.07577 -36.55522 -34.86674 -34.02625 -31.88536 -31.79277 -28.17530 -25.07272 -24.90188 -23.51600 -22.05853 -20.37159 -18.85632 -18.69258 -18.47401 -17.36932 -16.89181 -16.55761 -16.19991 -15.86014 -15.21030 -14.75025 -14.52966 -14.27748 -14.12575 -13.69912 -13.57205 -13.39759 -13.34869 -13.24145 -13.10588 -12.74420 -12.67219 -12.41866 -12.39340 -12.13725 -11.57812 -11.50982 -11.46056 -10.79924 -10.58799 -9.79618 -9.32728 -8.19122 -6.31903 -0.79927 0.43300 0.55499 1.41748 1.42577 1.53742 1.66252 2.40583 2.75115 2.88882 3.12501 3.23917 3.71895 3.92029 4.10748 4.14544 4.26124 4.36909 4.39754 4.65349 4.68075 4.72949 4.87360 5.10342 5.12633 5.20663 5.38010 5.38632 5.52500 5.56201 5.76182 5.93738 6.06402 6.16587 6.29992 6.81198 7.36869 8.90137 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.042840 B = 0.003950 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.431507 B = 7087.640455 C = 7247.534399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.610 4.610 3 S 2.610 3.390 4 O -0.985 6.985 5 O -0.990 6.990 6 N -1.053 6.053 7 C 0.096 3.904 8 C -0.099 4.099 9 C -0.124 4.124 10 C -0.052 4.052 11 C 0.052 3.948 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.130 4.130 21 C -0.107 4.107 22 H 0.102 0.898 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.141 0.859 26 H 0.163 0.837 27 H 0.430 0.570 28 H 0.163 0.837 29 H 0.129 0.871 30 H 0.011 0.989 31 H 0.003 0.997 32 H 0.265 0.735 33 H 0.115 0.885 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.421 2.280 14.310 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.743 4.743 3 S 2.708 3.292 4 O -0.976 6.976 5 O -0.980 6.980 6 N -0.808 5.808 7 C 0.002 3.998 8 C -0.119 4.119 9 C -0.143 4.143 10 C -0.052 4.052 11 C 0.015 3.985 12 C -0.566 4.566 13 H 0.074 0.926 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.788 3.212 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.148 4.148 21 C -0.128 4.128 22 H 0.121 0.879 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.160 0.840 26 H 0.181 0.819 27 H 0.269 0.731 28 H 0.181 0.819 29 H 0.147 0.853 30 H 0.029 0.971 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.952 3.003 14.007 19.996 hybrid contribution 1.495 -0.367 -0.274 1.563 sum -12.457 2.636 13.733 18.727 Atomic orbital electron populations 1.21685 0.89776 1.06538 1.03722 1.30289 1.07668 1.22436 1.13914 1.05020 0.72560 0.78647 0.72948 1.93560 1.81749 1.73849 1.48416 1.93568 1.84452 1.75382 1.44618 1.52826 1.25048 1.73764 1.29154 1.17082 1.01297 0.92681 0.88745 1.21547 0.97096 0.93596 0.99693 1.21103 0.99631 1.00887 0.92692 1.20547 0.93643 0.94510 0.96508 1.18162 0.93766 0.94820 0.91736 1.21383 0.92178 1.31240 1.11815 0.92560 1.25885 1.03822 0.94791 0.94723 1.70075 1.36199 1.34846 1.15824 0.85472 0.79228 0.78954 0.77562 1.19560 1.20763 1.19158 1.21009 0.99130 0.95043 0.99659 1.21527 0.97552 1.00048 0.93651 0.87877 0.90242 0.91302 0.84027 0.81896 0.73051 0.81938 0.85300 0.97070 0.97825 0.92598 0.86656 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.92 71.98 0.71 -1.20 16 2 C -0.61 -8.17 6.71 71.98 0.48 -7.69 16 3 S 2.61 54.93 5.43 -56.49 -0.31 54.62 16 4 O -0.99 -24.89 18.08 -127.65 -2.31 -27.20 16 5 O -0.99 -29.17 16.95 -127.65 -2.16 -31.33 16 6 N -1.05 -21.43 5.60 -51.37 -0.29 -21.72 16 7 C 0.10 2.55 5.70 38.21 0.22 2.76 16 8 C -0.10 -2.50 9.97 22.40 0.22 -2.27 16 9 C -0.12 -4.17 9.69 22.25 0.22 -3.95 16 10 C -0.05 -2.13 5.07 -19.84 -0.10 -2.23 16 11 C 0.05 2.67 5.10 29.10 0.15 2.82 16 12 C -0.53 -29.20 9.09 25.60 0.23 -28.97 16 13 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 14 C 0.01 0.34 5.46 84.65 0.46 0.80 16 15 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 16 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 C -0.13 -4.93 9.69 22.25 0.22 -4.71 16 21 C -0.11 -3.46 9.23 22.40 0.21 -3.25 16 22 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.16 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.43 6.90 8.92 -96.75 -0.86 6.04 16 28 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.01 0.59 8.08 -2.38 -0.02 0.57 16 31 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 32 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 33 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 34 H 0.13 4.02 7.81 -2.91 -0.02 4.00 16 Total: -1.00 -72.25 309.67 0.50 -71.75 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.24 Total: 10.96 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 3.02 Total: -47.90 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: 0.00 Total: -76.25 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -4.47 Total: -58.53 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.31 Total: 54.62 kcal Total: -72.25 0.50 -71.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.705 kcal (2) G-P(sol) polarization free energy of solvation -72.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds