Wall clock time and date at job start Mon Mar 30 2020 01:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65602 * 120.00021 * 2 1 4 4 O 1.42101 * 106.40017 * 309.88213 * 3 2 1 5 5 O 1.42095 * 106.40455 * 176.96451 * 3 2 1 6 6 C 1.76202 * 107.21914 * 63.42119 * 3 2 1 7 7 C 1.38257 * 119.99815 * 244.26209 * 6 3 2 8 8 C 1.38217 * 119.99904 * 179.97438 * 7 6 3 9 9 C 1.38260 * 119.99543 * 359.81231 * 8 7 6 10 10 C 1.38211 * 120.00353 * 0.42813 * 9 8 7 11 11 C 1.38211 * 120.00151 * 64.24712 * 6 3 2 12 12 C 1.50700 * 119.99614 * 359.97438 * 11 6 3 13 13 C 1.53005 * 109.47061 * 91.02720 * 12 11 6 14 14 C 1.50699 * 109.47248 * 182.87850 * 13 12 11 15 15 H 1.07998 * 119.99972 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99790 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99683 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00281 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47373 * 89.99603 * 18 16 14 20 20 H 1.48497 * 109.47251 * 209.99908 * 18 16 14 21 21 H 1.48498 * 109.47183 * 329.99523 * 18 16 14 22 22 H 1.09002 * 109.47055 * 295.10706 * 1 2 3 23 23 H 1.08998 * 109.47194 * 55.10299 * 1 2 3 24 24 H 1.09001 * 109.47032 * 175.10731 * 1 2 3 25 25 H 0.96993 * 119.99909 * 179.97438 * 2 1 3 26 26 H 1.08003 * 120.00202 * 0.02562 * 7 6 3 27 27 H 1.07997 * 119.99859 * 180.02562 * 8 7 6 28 28 H 1.08004 * 119.99573 * 180.22716 * 9 8 7 29 29 H 1.07993 * 119.99954 * 179.81079 * 10 9 8 30 30 H 1.08999 * 109.47043 * 211.02530 * 12 11 6 31 31 H 1.08995 * 109.47600 * 331.02760 * 12 11 6 32 32 H 1.08998 * 109.46946 * 302.88113 * 13 12 11 33 33 H 1.09001 * 109.47049 * 62.87635 * 13 12 11 34 34 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7366 2.2187 -1.0461 5 8 3.6725 1.1011 0.0722 6 6 1.9017 2.2624 1.5052 7 6 1.2208 3.4653 1.4754 8 6 0.9133 4.1147 2.6561 9 6 1.2833 3.5595 3.8671 10 6 1.9684 2.3594 3.8966 11 6 2.2751 1.7094 2.7156 12 6 3.0165 0.3978 2.7479 13 6 4.5232 0.6628 2.7209 14 6 5.2634 -0.6493 2.6819 15 1 4.7142 -1.5791 2.6765 16 6 6.6418 -0.6625 2.6520 17 7 7.2878 -1.8076 2.6185 18 14 7.5917 0.9459 2.6607 19 1 7.8734 1.3469 4.0624 20 1 8.8721 0.7685 1.9297 21 1 6.7848 2.0009 1.9966 22 1 -0.3633 0.4361 0.9306 23 1 -0.3633 0.5879 -0.8429 24 1 -0.3633 -1.0239 -0.0877 25 1 1.9500 -0.8400 0.0004 26 1 0.9284 3.8971 0.5296 27 1 0.3811 5.0542 2.6329 28 1 1.0398 4.0651 4.7898 29 1 2.2600 1.9273 4.8423 30 1 2.7590 -0.1427 3.6587 31 1 2.7370 -0.1991 1.8799 32 1 4.7733 1.2476 1.8357 33 1 4.8109 1.2159 3.6150 34 1 8.2575 -1.8169 2.5979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:38 Heat of formation + Delta-G solvation = -49.000146 kcal Electronic energy + Delta-G solvation = -19071.311079 eV Core-core repulsion = 16096.257797 eV Total energy + Delta-G solvation = -2975.053282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.28960 -36.99085 -35.50814 -35.01945 -34.07384 -32.14088 -31.13838 -29.39993 -26.00642 -25.31172 -23.11312 -21.97100 -20.28450 -19.29791 -17.73681 -17.23994 -16.65131 -16.29968 -15.53953 -15.14393 -14.42060 -14.27964 -14.18373 -13.76729 -13.13306 -13.06337 -12.91411 -12.72367 -12.45195 -12.13345 -11.76965 -11.63551 -11.42970 -11.34442 -11.21691 -10.91525 -10.51702 -10.17424 -9.92756 -9.61432 -9.41635 -9.26140 -9.08011 -8.55575 -8.40387 -5.93929 -3.89547 0.65327 0.99650 1.42808 3.18465 3.40009 3.48066 3.58347 3.64049 4.01885 4.58403 4.65874 4.93406 4.96394 4.98860 5.06413 5.35277 5.38817 5.42772 5.48389 5.66300 5.73496 5.83453 5.89070 6.05042 6.20766 6.27160 6.40558 6.56690 6.69856 6.98795 7.06817 7.31354 7.63803 7.91962 8.60735 9.08696 9.70010 11.19582 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.007838 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.735575 B = 3571.487161 C = 4210.782744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.120 6.120 3 S 2.685 3.315 4 O -0.973 6.973 5 O -0.920 6.920 6 C -0.680 4.680 7 C -0.024 4.024 8 C -0.159 4.159 9 C -0.065 4.065 10 C -0.144 4.144 11 C 0.040 3.960 12 C -0.095 4.095 13 C -0.014 4.014 14 C -0.508 4.508 15 H 0.071 0.929 16 C 0.069 3.931 17 N -0.907 5.907 18 Si 0.873 3.127 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.260 1.260 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.424 0.576 26 H 0.138 0.862 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.008 0.992 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.736 8.230 -1.173 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.881 5.881 3 S 2.774 3.226 4 O -0.963 6.963 5 O -0.910 6.910 6 C -0.767 4.767 7 C -0.043 4.043 8 C -0.178 4.178 9 C -0.083 4.083 10 C -0.163 4.163 11 C 0.039 3.961 12 C -0.132 4.132 13 C -0.051 4.051 14 C -0.546 4.546 15 H 0.089 0.911 16 C -0.132 4.132 17 N -0.547 5.547 18 Si 0.700 3.300 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.184 1.184 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.259 0.741 26 H 0.156 0.844 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.140 8.615 -1.849 18.389 hybrid contribution 0.422 0.553 0.889 1.128 sum -15.718 9.168 -0.961 18.222 Atomic orbital electron populations 1.21423 0.79095 1.03990 1.01523 1.55409 1.15810 1.24837 1.92019 1.02296 0.73808 0.72808 0.73724 1.93521 1.80222 1.69664 1.52929 1.93788 1.28707 1.82232 1.86270 1.30751 1.16246 1.10271 1.19470 1.20907 0.92082 0.92044 0.99294 1.21150 1.03290 1.00818 0.92565 1.21418 0.94309 0.94555 0.97992 1.21245 1.00406 0.96192 0.98441 1.20110 0.88751 0.95858 0.91369 1.21096 0.98511 0.90692 1.02940 1.19769 0.88477 0.98981 0.97894 1.20975 0.91389 0.91986 1.50204 0.91103 1.24915 0.97725 0.95944 0.94603 1.69906 1.07941 1.25032 1.51814 0.86866 0.79602 0.85408 0.78117 1.20614 1.21370 1.18434 0.92615 0.91603 0.90036 0.74080 0.84433 0.85599 0.85674 0.85051 0.90363 0.91522 0.92858 0.97347 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 11.16 59.85 0.67 1.51 16 2 N -1.12 -14.63 5.00 -16.63 -0.08 -14.71 16 3 S 2.68 45.01 4.92 -107.50 -0.53 44.48 16 4 O -0.97 -17.12 16.66 -57.17 -0.95 -18.07 16 5 O -0.92 -19.71 14.11 -57.17 -0.81 -20.52 16 6 C -0.68 -10.96 5.85 -39.58 -0.23 -11.19 16 7 C -0.02 -0.33 9.55 -39.58 -0.38 -0.71 16 8 C -0.16 -1.92 10.05 -39.58 -0.40 -2.32 16 9 C -0.06 -0.79 10.05 -39.58 -0.40 -1.18 16 10 C -0.14 -2.11 9.71 -39.59 -0.38 -2.49 16 11 C 0.04 0.69 5.13 -104.63 -0.54 0.15 16 12 C -0.09 -1.85 4.52 -27.88 -0.13 -1.97 16 13 C -0.01 -0.34 3.60 -27.88 -0.10 -0.44 16 14 C -0.51 -14.71 9.66 -34.44 -0.33 -15.04 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 18 Si 0.87 22.95 27.47 -169.99 -4.67 18.28 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.61 8.01 -51.93 -0.42 0.19 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.42 5.23 8.57 -34.47 -0.30 4.94 16 26 H 0.14 1.70 7.34 -52.48 -0.39 1.32 16 27 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 31 H 0.07 1.22 5.01 -51.93 -0.26 0.96 16 32 H 0.05 1.40 4.92 -51.93 -0.26 1.15 16 33 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 LS Contribution 293.88 15.07 4.43 4.43 Total: -1.00 -36.09 293.88 -8.28 -44.36 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.13 Total: 1.28 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: -2.31 Total: -31.72 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.69 Total: -42.53 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -1.76 Total: -38.59 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.28 kcal Atomic # 16 Polarization: 45.01 SS G_CDS: -0.53 Total: 44.48 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -36.09 -8.28 -44.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.636 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds