Wall clock time and date at job start Mon Mar 30 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65602 * 120.00021 * 2 1 4 4 O 1.42101 * 106.40017 * 309.88213 * 3 2 1 5 5 O 1.42095 * 106.40455 * 176.96451 * 3 2 1 6 6 C 1.76202 * 107.21914 * 63.42119 * 3 2 1 7 7 C 1.38257 * 119.99815 * 244.26209 * 6 3 2 8 8 C 1.38217 * 119.99904 * 179.97438 * 7 6 3 9 9 C 1.38260 * 119.99543 * 359.81231 * 8 7 6 10 10 C 1.38211 * 120.00353 * 0.42813 * 9 8 7 11 11 C 1.38211 * 120.00151 * 64.24712 * 6 3 2 12 12 C 1.50700 * 119.99614 * 359.97438 * 11 6 3 13 13 C 1.53005 * 109.47061 * 91.02720 * 12 11 6 14 14 C 1.50699 * 109.47248 * 182.87850 * 13 12 11 15 15 H 1.07998 * 119.99972 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99790 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99683 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00281 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47373 * 89.99603 * 18 16 14 20 20 H 1.48497 * 109.47251 * 209.99908 * 18 16 14 21 21 H 1.48498 * 109.47183 * 329.99523 * 18 16 14 22 22 H 1.09002 * 109.47055 * 295.10706 * 1 2 3 23 23 H 1.08998 * 109.47194 * 55.10299 * 1 2 3 24 24 H 1.09001 * 109.47032 * 175.10731 * 1 2 3 25 25 H 0.96993 * 119.99909 * 179.97438 * 2 1 3 26 26 H 1.08003 * 120.00202 * 0.02562 * 7 6 3 27 27 H 1.07997 * 119.99859 * 180.02562 * 8 7 6 28 28 H 1.08004 * 119.99573 * 180.22716 * 9 8 7 29 29 H 1.07993 * 119.99954 * 179.81079 * 10 9 8 30 30 H 1.08999 * 109.47043 * 211.02530 * 12 11 6 31 31 H 1.08995 * 109.47600 * 331.02760 * 12 11 6 32 32 H 1.08998 * 109.46946 * 302.88113 * 13 12 11 33 33 H 1.09001 * 109.47049 * 62.87635 * 13 12 11 34 34 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7366 2.2187 -1.0461 5 8 3.6725 1.1011 0.0722 6 6 1.9017 2.2624 1.5052 7 6 1.2208 3.4653 1.4754 8 6 0.9133 4.1147 2.6561 9 6 1.2833 3.5595 3.8671 10 6 1.9684 2.3594 3.8966 11 6 2.2751 1.7094 2.7156 12 6 3.0165 0.3978 2.7479 13 6 4.5232 0.6628 2.7209 14 6 5.2634 -0.6493 2.6819 15 1 4.7142 -1.5791 2.6765 16 6 6.6418 -0.6625 2.6520 17 7 7.2878 -1.8076 2.6185 18 14 7.5917 0.9459 2.6607 19 1 7.8734 1.3469 4.0624 20 1 8.8721 0.7685 1.9297 21 1 6.7848 2.0009 1.9966 22 1 -0.3633 0.4361 0.9306 23 1 -0.3633 0.5879 -0.8429 24 1 -0.3633 -1.0239 -0.0877 25 1 1.9500 -0.8400 0.0004 26 1 0.9284 3.8971 0.5296 27 1 0.3811 5.0542 2.6329 28 1 1.0398 4.0651 4.7898 29 1 2.2600 1.9273 4.8423 30 1 2.7590 -0.1427 3.6587 31 1 2.7370 -0.1991 1.8799 32 1 4.7733 1.2476 1.8357 33 1 4.8109 1.2159 3.6150 34 1 8.2575 -1.8169 2.5979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:37 Heat of formation + Delta-G solvation = -75.738594 kcal Electronic energy + Delta-G solvation = -19072.470545 eV Core-core repulsion = 16096.257797 eV Total energy + Delta-G solvation = -2976.212748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40706 -38.38459 -36.92060 -36.16883 -35.65248 -34.07394 -32.20510 -31.03897 -27.20483 -26.72634 -24.20144 -23.52495 -21.88834 -20.50724 -19.13391 -18.72457 -18.34940 -17.50009 -16.64000 -16.36028 -16.22674 -15.66854 -15.41760 -14.90386 -14.65696 -14.59037 -14.29401 -14.04646 -13.73027 -13.39591 -13.25110 -13.12569 -12.96888 -12.88303 -12.48873 -12.46518 -11.97648 -11.84756 -11.64833 -11.58733 -11.21350 -10.70056 -10.44967 -10.32633 -9.73411 -8.25494 -6.24458 -0.56951 -0.12796 0.34907 1.30120 1.35699 1.49397 2.04516 2.39066 2.53327 2.78900 3.11725 3.44371 3.76195 3.88111 4.04469 4.21724 4.31100 4.41301 4.55210 4.62237 4.66201 4.72258 4.90277 4.95031 4.98238 5.07984 5.18087 5.29586 5.39695 5.48212 5.63502 5.78396 5.94366 6.05745 6.30842 6.80316 7.37993 8.91096 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.007838 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.735575 B = 3571.487161 C = 4210.782744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -1.116 6.116 3 S 2.692 3.308 4 O -0.989 6.989 5 O -0.977 6.977 6 C -0.687 4.687 7 C -0.035 4.035 8 C -0.146 4.146 9 C -0.055 4.055 10 C -0.153 4.153 11 C 0.015 3.985 12 C -0.091 4.091 13 C -0.012 4.012 14 C -0.511 4.511 15 H 0.042 0.958 16 C 0.008 3.992 17 N -0.951 5.951 18 Si 0.931 3.069 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.259 1.259 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.425 0.575 26 H 0.150 0.850 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.141 0.859 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.013 0.987 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.782 10.797 -0.042 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.879 5.879 3 S 2.784 3.216 4 O -0.979 6.979 5 O -0.967 6.967 6 C -0.776 4.776 7 C -0.054 4.054 8 C -0.165 4.165 9 C -0.072 4.072 10 C -0.172 4.172 11 C 0.013 3.987 12 C -0.129 4.129 13 C -0.050 4.050 14 C -0.549 4.549 15 H 0.061 0.939 16 C -0.188 4.188 17 N -0.592 5.592 18 Si 0.755 3.245 19 H -0.185 1.185 20 H -0.209 1.209 21 H -0.183 1.183 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.127 0.873 25 H 0.262 0.738 26 H 0.168 0.832 27 H 0.184 0.816 28 H 0.183 0.817 29 H 0.159 0.841 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.202 11.175 -0.734 21.371 hybrid contribution 0.893 -0.252 0.550 1.079 sum -17.309 10.923 -0.184 20.468 Atomic orbital electron populations 1.21751 0.76785 1.06078 1.02355 1.55174 1.17304 1.23539 1.91870 1.01668 0.72768 0.73228 0.73971 1.93488 1.80056 1.70352 1.53968 1.93711 1.32498 1.83303 1.87204 1.30490 1.17552 1.11378 1.18203 1.21215 0.91846 0.91326 1.00999 1.21653 1.01705 1.01597 0.91523 1.21875 0.92276 0.93269 0.99819 1.21490 1.00641 0.97176 0.97883 1.19832 0.90809 0.95212 0.92802 1.20878 0.95521 0.92992 1.03469 1.19640 0.91943 0.96220 0.97176 1.21368 0.91715 0.93040 1.48779 0.93937 1.25790 0.99037 0.99285 0.94726 1.70038 1.08356 1.27196 1.53644 0.85933 0.78140 0.81254 0.79150 1.18498 1.20905 1.18297 0.91548 0.91108 0.87300 0.73839 0.83218 0.81631 0.81677 0.84084 0.89674 0.91385 0.94332 0.96907 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 11.16 127.77 1.43 2.78 16 2 N -1.12 -29.07 5.00 -206.53 -1.03 -30.10 16 3 S 2.69 90.97 4.92 -56.49 -0.28 90.69 16 4 O -0.99 -34.60 16.66 -128.00 -2.13 -36.73 16 5 O -0.98 -43.49 14.11 -128.00 -1.81 -45.29 16 6 C -0.69 -21.25 5.85 22.27 0.13 -21.12 16 7 C -0.03 -0.86 9.55 22.27 0.21 -0.65 16 8 C -0.15 -2.81 10.05 22.27 0.22 -2.59 16 9 C -0.05 -1.07 10.05 22.27 0.22 -0.84 16 10 C -0.15 -4.04 9.71 22.27 0.22 -3.83 16 11 C 0.01 0.48 5.13 -19.87 -0.10 0.38 16 12 C -0.09 -3.57 4.52 29.85 0.14 -3.44 16 13 C -0.01 -0.61 3.60 29.85 0.11 -0.50 16 14 C -0.51 -30.54 9.66 25.60 0.25 -30.30 16 15 H 0.04 2.69 7.99 -2.91 -0.02 2.67 16 16 C 0.01 0.48 5.47 84.65 0.46 0.94 16 17 N -0.95 -61.62 13.96 21.45 0.30 -61.32 16 18 Si 0.93 47.81 27.47 68.60 1.88 49.69 16 19 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.26 -13.14 6.54 99.48 0.65 -12.49 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.07 1.20 8.01 -2.39 -0.02 1.18 16 24 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.43 10.80 8.57 -96.75 -0.83 9.97 16 26 H 0.15 3.30 7.34 -2.91 -0.02 3.28 16 27 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 28 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 29 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.08 3.11 8.09 -2.39 -0.02 3.09 16 31 H 0.07 2.57 5.01 -2.39 -0.01 2.56 16 32 H 0.04 2.07 4.92 -2.39 -0.01 2.05 16 33 H 0.01 0.61 7.57 -2.39 -0.02 0.60 16 34 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -80.25 293.88 0.45 -79.80 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.23 Total: 12.41 kcal Atomic # 6 Polarization: -62.44 SS G_CDS: 3.28 Total: -59.16 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -0.73 Total: -91.42 kcal Atomic # 8 Polarization: -78.08 SS G_CDS: -3.94 Total: -82.02 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.88 Total: 49.69 kcal Atomic # 16 Polarization: 90.97 SS G_CDS: -0.28 Total: 90.69 kcal Total: -80.25 0.45 -79.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.063 kcal (2) G-P(sol) polarization free energy of solvation -80.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds