Wall clock time and date at job start Mon Mar 30 2020 01:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47026 * 2 1 4 4 S 1.81398 * 109.47061 * 119.99854 * 2 1 3 5 5 O 1.42107 * 110.54379 * 73.37288 * 4 2 1 6 6 O 1.42099 * 110.54289 * 296.62742 * 4 2 1 7 7 N 1.65599 * 104.45206 * 185.00035 * 4 2 1 8 8 C 1.38733 * 119.99495 * 63.68716 * 7 4 2 9 9 C 1.38748 * 120.29619 * 35.69533 * 8 7 4 10 10 C 1.38172 * 120.02274 * 180.27558 * 9 8 7 11 11 C 1.38901 * 120.62330 * 359.72003 * 10 9 8 12 12 C 1.36451 * 120.60260 * 359.97438 * 11 10 9 13 13 C 1.40721 * 119.94662 * 0.02562 * 12 11 10 14 14 C 1.41044 * 120.30446 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00144 * 206.41048 * 14 13 12 16 16 C 1.39927 * 120.00437 * 26.40760 * 14 13 12 17 17 N 1.30885 * 119.99554 * 25.00558 * 16 14 13 18 18 Si 1.86797 * 120.00505 * 205.01111 * 16 14 13 19 19 H 1.48500 * 109.47235 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47119 * 299.99692 * 18 16 14 21 21 H 1.48498 * 109.47268 * 59.99786 * 18 16 14 22 22 H 1.09003 * 109.47646 * 300.00007 * 1 2 3 23 23 H 1.09005 * 109.47507 * 60.00204 * 1 2 3 24 24 H 1.09003 * 109.47503 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47361 * 239.99973 * 2 1 3 26 26 H 1.09002 * 109.47254 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47340 * 300.00186 * 3 2 1 28 28 H 1.09008 * 109.47355 * 59.99705 * 3 2 1 29 29 H 0.96999 * 120.00393 * 243.68683 * 7 4 2 30 30 H 1.07997 * 119.98867 * 359.97438 * 9 8 7 31 31 H 1.07994 * 119.68866 * 179.73811 * 10 9 8 32 32 H 1.08004 * 119.69810 * 179.97438 * 11 10 9 33 33 H 1.07996 * 120.02285 * 180.02562 * 12 11 10 34 34 H 0.97004 * 119.99928 * 6.24058 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8551 1.4811 5 8 1.9418 -2.2579 1.3607 6 8 1.7385 -0.1594 2.6552 7 7 3.7785 -0.6626 1.4273 8 6 4.3314 0.6068 1.5148 9 6 3.7489 1.5695 2.3265 10 6 4.3011 2.8337 2.4050 11 6 5.4427 3.1534 1.6812 12 6 6.0400 2.2244 0.8799 13 6 5.4985 0.9292 0.7816 14 6 6.1100 -0.0371 -0.0440 15 1 5.5220 -0.8415 -0.4606 16 6 7.4785 0.0464 -0.3234 17 7 8.2794 0.6647 0.5070 18 14 8.1626 -0.7244 -1.8814 19 1 9.6289 -0.4981 -1.9430 20 1 7.8863 -2.1834 -1.8743 21 1 7.5162 -0.1039 -3.0656 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6765 1.9564 0.8900 29 1 4.3548 -1.4373 1.3347 30 1 2.8609 1.3322 2.8934 31 1 3.8408 3.5802 3.0352 32 1 5.8614 4.1463 1.7534 33 1 6.9275 2.4829 0.3216 34 1 7.9419 0.9857 1.3579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252523676.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:30 Heat of formation + Delta-G solvation = -63.280553 kcal Electronic energy + Delta-G solvation = -19378.948657 eV Core-core repulsion = 16403.276130 eV Total energy + Delta-G solvation = -2975.672527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.52904 -36.73259 -35.61499 -34.80915 -34.19575 -33.80137 -29.47692 -28.17207 -27.08847 -25.12701 -22.29435 -21.40248 -20.98410 -18.73137 -18.12221 -17.02602 -16.80054 -16.06468 -15.27818 -14.87160 -14.32627 -14.13038 -13.76778 -13.19470 -13.11262 -12.93844 -12.59406 -12.35829 -12.10427 -12.05009 -11.78364 -11.57257 -11.41049 -11.25740 -11.18410 -10.85768 -10.67590 -10.48290 -10.32863 -9.90470 -9.76780 -9.39417 -9.07058 -7.74680 -7.46754 -7.07834 -4.55007 0.63420 2.63447 2.68558 3.08983 3.17751 3.18864 3.27900 3.91950 4.09529 4.43686 4.48884 4.73415 4.99217 5.20709 5.29560 5.61979 5.62737 5.88367 5.99537 6.03314 6.11718 6.14458 6.29735 6.55443 6.63732 6.83067 6.88595 7.21937 7.36716 7.61553 7.68007 7.79979 7.89687 8.01116 8.19302 8.59202 8.72657 9.93072 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.007956 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.189470 B = 3518.630215 C = 4177.901031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.591 4.591 3 C -0.147 4.147 4 S 2.601 3.399 5 O -0.977 6.977 6 O -0.956 6.956 7 N -1.022 6.022 8 C 0.016 3.984 9 C -0.121 4.121 10 C -0.230 4.230 11 C -0.093 4.093 12 C -0.202 4.202 13 C 0.091 3.909 14 C -0.517 4.517 15 H 0.078 0.922 16 C 0.040 3.960 17 N -0.791 5.791 18 Si 1.062 2.938 19 H -0.273 1.273 20 H -0.275 1.275 21 H -0.274 1.274 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.131 0.869 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.418 0.582 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 0.177 -2.936 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.700 4.700 3 C -0.205 4.205 4 S 2.696 3.304 5 O -0.967 6.967 6 O -0.946 6.946 7 N -0.773 5.773 8 C -0.081 4.081 9 C -0.143 4.143 10 C -0.250 4.250 11 C -0.113 4.113 12 C -0.222 4.222 13 C 0.085 3.915 14 C -0.546 4.546 15 H 0.096 0.904 16 C -0.183 4.183 17 N -0.413 5.413 18 Si 0.885 3.115 19 H -0.198 1.198 20 H -0.200 1.200 21 H -0.200 1.200 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.149 0.851 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.255 0.745 30 H 0.155 0.845 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.015 -0.390 -3.104 7.681 hybrid contribution -0.974 0.249 0.152 1.017 sum -7.989 -0.141 -2.952 8.518 Atomic orbital electron populations 1.21619 0.91006 1.02910 1.04370 1.30349 1.05733 1.11295 1.22614 1.22035 1.04530 0.90685 1.03233 1.05672 0.73526 0.73924 0.77282 1.93531 1.85054 1.30159 1.87958 1.93477 1.82265 1.75163 1.43710 1.52308 1.24159 1.13244 1.87590 1.17117 1.03021 0.84036 1.03945 1.21511 1.01455 0.94042 0.97272 1.20223 1.00377 0.96718 1.07674 1.20444 0.95708 0.97739 0.97365 1.20818 1.03482 0.93236 1.04670 1.17549 0.91683 0.92421 0.89876 1.20393 0.96156 1.11159 1.26865 0.90433 1.26993 0.93917 0.94534 1.02873 1.70473 1.39415 1.23380 1.08074 0.83670 0.76948 0.76743 0.74105 1.19808 1.20047 1.19989 0.91064 0.90417 0.91684 0.85063 0.88435 0.91852 0.91041 0.74492 0.84470 0.88683 0.89098 0.87400 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 37.16 0.34 -1.36 16 2 C -0.59 -8.71 3.60 -26.73 -0.10 -8.80 16 3 C -0.15 -2.32 7.66 37.16 0.28 -2.04 16 4 S 2.60 46.32 4.97 -107.50 -0.53 45.79 16 5 O -0.98 -19.18 18.08 -57.54 -1.04 -20.22 16 6 O -0.96 -18.88 14.80 -57.54 -0.85 -19.73 16 7 N -1.02 -20.12 5.25 32.72 0.17 -19.95 16 8 C 0.02 0.35 3.96 -83.29 -0.33 0.02 16 9 C -0.12 -2.58 6.76 -39.42 -0.27 -2.84 16 10 C -0.23 -4.75 10.04 -39.36 -0.40 -5.15 16 11 C -0.09 -1.98 9.96 -39.98 -0.40 -2.38 16 12 C -0.20 -4.70 7.90 -39.29 -0.31 -5.01 16 13 C 0.09 2.14 4.89 -106.63 -0.52 1.62 16 14 C -0.52 -12.30 8.33 -37.89 -0.32 -12.62 16 15 H 0.08 1.76 7.42 -52.49 -0.39 1.37 16 16 C 0.04 0.93 4.94 -17.32 -0.09 0.85 16 17 N -0.79 -19.66 12.33 55.55 0.68 -18.97 16 18 Si 1.06 20.22 30.00 -169.99 -5.10 15.12 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 26 H 0.10 1.80 4.67 -51.93 -0.24 1.55 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.12 7.34 -51.92 -0.38 0.74 16 29 H 0.42 8.00 8.08 -34.47 -0.28 7.72 16 30 H 0.14 2.87 5.04 -52.49 -0.26 2.61 16 31 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.11 2.60 6.55 -52.49 -0.34 2.26 16 34 H 0.30 7.69 6.72 -40.82 -0.27 7.42 16 LS Contribution 286.62 15.07 4.32 4.32 Total: -1.00 -27.95 286.62 -8.37 -36.32 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -3.93 Total: 15.05 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: -2.09 Total: -37.72 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.86 Total: -38.93 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.89 Total: -39.95 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.10 Total: 15.12 kcal Atomic # 16 Polarization: 46.32 SS G_CDS: -0.53 Total: 45.79 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.95 -8.37 -36.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252523676.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.963 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds