Wall clock time and date at job start Mon Mar 30 2020 01:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48506 * 109.47105 * 264.66509 * 3 2 1 5 5 H 1.48502 * 109.47297 * 24.66405 * 3 2 1 6 6 H 1.48503 * 109.47165 * 144.66630 * 3 2 1 7 7 C 1.37873 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99770 * 4.70741 * 7 2 1 9 9 C 1.50694 * 120.00327 * 184.98561 * 7 2 1 10 10 H 1.08993 * 109.47099 * 24.82175 * 9 7 2 11 11 C 1.50701 * 109.47557 * 144.82716 * 9 7 2 12 12 O 1.21279 * 120.00537 * 119.99894 * 11 9 7 13 13 N 1.34780 * 119.99507 * 300.00244 * 11 9 7 14 14 C 1.46507 * 119.99715 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.46597 * 179.97438 * 14 13 11 16 16 F 1.39890 * 109.47566 * 299.99580 * 15 14 13 17 17 F 1.39902 * 109.47394 * 60.00296 * 15 14 13 18 18 C 1.50706 * 109.46942 * 264.82523 * 9 7 2 19 19 C 1.38236 * 119.99842 * 305.00952 * 18 9 7 20 20 C 1.38235 * 119.99754 * 179.80983 * 19 18 9 21 21 C 1.38239 * 119.99940 * 0.40204 * 20 19 18 22 22 C 1.38234 * 120.00038 * 359.85501 * 21 20 19 23 23 C 1.38228 * 119.99904 * 125.28988 * 18 9 7 24 24 H 0.97005 * 119.99741 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00023 * 359.97438 * 13 11 9 26 26 H 1.08995 * 109.46448 * 299.99185 * 14 13 11 27 27 H 1.08999 * 109.47061 * 59.99992 * 14 13 11 28 28 H 1.09004 * 109.46952 * 179.97438 * 15 14 13 29 29 H 1.07998 * 120.00365 * 0.02562 * 19 18 9 30 30 H 1.07998 * 120.00073 * 180.23745 * 20 19 18 31 31 H 1.08002 * 119.99764 * 179.83407 * 21 20 19 32 32 H 1.07999 * 119.99887 * 179.97438 * 22 21 20 33 33 H 1.08002 * 120.00085 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6095 1.9813 -1.3941 5 1 1.3949 2.6826 0.5842 6 1 3.4859 1.4753 0.8097 7 6 2.0046 -1.1940 0.0005 8 1 1.4672 -2.1278 -0.0758 9 6 3.5072 -1.1965 0.1139 10 1 3.8355 -0.2839 0.6112 11 6 3.9485 -2.3928 0.9172 12 8 4.6839 -3.2193 0.4201 13 7 3.5257 -2.5443 2.1880 14 6 3.9551 -3.7071 2.9690 15 6 3.3386 -3.6377 4.3676 16 9 3.7599 -2.4661 5.0055 17 9 1.9435 -3.6358 4.2627 18 6 4.1148 -1.2645 -1.2635 19 6 3.7598 -2.2849 -2.1259 20 6 4.3142 -2.3450 -3.3908 21 6 5.2298 -1.3895 -3.7903 22 6 5.5887 -0.3722 -2.9260 23 6 5.0314 -0.3099 -1.6625 24 1 -0.4850 0.8401 -0.0004 25 1 2.9378 -1.8832 2.5856 26 1 3.6271 -4.6198 2.4718 27 1 5.0420 -3.7083 3.0511 28 1 3.6577 -4.5030 4.9487 29 1 3.0468 -3.0331 -1.8127 30 1 4.0340 -3.1400 -4.0659 31 1 5.6649 -1.4381 -4.7776 32 1 6.3044 0.3741 -3.2380 33 1 5.3118 0.4850 -0.9872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265471783.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:03 Heat of formation + Delta-G solvation = -122.648903 kcal Electronic energy + Delta-G solvation = -20468.042550 eV Core-core repulsion = 16935.955232 eV Total energy + Delta-G solvation = -3532.087318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.91148 -46.90700 -39.36870 -37.92470 -34.35218 -33.66369 -31.53008 -30.13502 -29.48257 -27.49766 -23.84570 -22.72961 -21.85377 -20.98958 -19.55547 -17.38303 -17.32636 -17.11703 -17.01620 -16.07195 -15.58159 -14.94621 -14.65954 -14.43488 -14.13752 -13.74713 -13.67878 -13.26936 -13.03815 -12.71487 -12.65968 -12.44573 -12.30856 -12.05376 -11.86945 -11.17186 -11.05566 -10.99268 -10.47285 -10.23877 -9.91904 -9.55716 -9.05844 -8.72706 -8.62058 -8.13951 -7.82252 -6.30294 -4.35059 2.14848 2.21204 3.15583 3.23583 3.27642 3.47131 3.65559 3.78940 4.17976 4.22175 4.61423 4.61867 4.84951 5.00846 5.51766 5.55577 5.59796 5.62800 5.72240 5.94445 6.04095 6.27713 6.32020 6.45533 6.73395 6.84152 6.89606 7.16747 7.24761 7.26635 7.58595 7.79218 8.08932 8.22638 8.68916 8.98949 9.27163 10.80588 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.007374 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.538590 B = 3796.075285 C = 4766.025506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.086 3.914 3 Si 0.866 3.134 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.020 3.980 10 H 0.075 0.925 11 C 0.540 3.460 12 O -0.560 6.560 13 N -0.727 5.727 14 C 0.072 3.928 15 C 0.254 3.746 16 F -0.204 7.204 17 F -0.198 7.198 18 C -0.028 4.028 19 C -0.073 4.073 20 C -0.129 4.129 21 C -0.143 4.143 22 C -0.128 4.128 23 C -0.137 4.137 24 H 0.269 0.731 25 H 0.411 0.589 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 -4.136 4.528 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.550 4.550 8 H 0.101 0.899 9 C -0.002 4.002 10 H 0.092 0.908 11 C 0.329 3.671 12 O -0.438 6.438 13 N -0.381 5.381 14 C -0.054 4.054 15 C 0.200 3.800 16 F -0.185 7.185 17 F -0.179 7.179 18 C -0.029 4.029 19 C -0.091 4.091 20 C -0.147 4.147 21 C -0.161 4.161 22 C -0.146 4.146 23 C -0.155 4.155 24 H 0.079 0.921 25 H 0.247 0.753 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.352 -4.583 4.191 10.408 hybrid contribution -0.100 1.322 0.191 1.340 sum 8.251 -3.260 4.382 9.895 Atomic orbital electron populations 1.69864 1.06181 1.27539 1.48027 1.24979 0.94725 0.98789 0.93439 0.87014 0.80189 0.83794 0.79695 1.19124 1.21051 1.18677 1.20517 0.86121 0.95424 1.52925 0.89921 1.18568 0.98444 0.93793 0.89373 0.90764 1.21192 0.77493 0.87989 0.80418 1.90597 1.37425 1.45474 1.70344 1.45722 1.52792 1.25478 1.14124 1.22337 1.00872 0.92878 0.89266 1.22222 0.76592 0.86634 0.94507 1.93000 1.89703 1.52248 1.83546 1.93047 1.30930 1.96926 1.96990 1.20064 0.92390 0.93354 0.97076 1.20843 0.98001 0.97631 0.92649 1.21032 0.98154 0.98988 0.96537 1.20864 0.99843 0.96301 0.99106 1.20883 1.00675 0.98658 0.94420 1.20975 0.98159 0.99742 0.96623 0.92067 0.75264 0.88991 0.89194 0.86266 0.86517 0.87107 0.87315 0.87245 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.06 13.96 55.43 0.77 -24.29 16 2 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 20.08 27.23 -169.99 -4.63 15.45 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.26 -5.65 6.06 56.52 0.34 -5.30 16 7 C -0.51 -13.23 8.06 -34.44 -0.28 -13.51 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 9 C 0.02 0.45 1.90 -94.08 -0.18 0.27 16 10 H 0.07 1.67 4.87 -51.93 -0.25 1.41 16 11 C 0.54 11.59 7.04 -10.98 -0.08 11.51 16 12 O -0.56 -12.89 15.37 5.56 0.09 -12.80 16 13 N -0.73 -13.24 5.32 -60.29 -0.32 -13.56 16 14 C 0.07 0.99 5.91 -4.04 -0.02 0.96 16 15 C 0.25 2.91 5.42 37.16 0.20 3.11 16 16 F -0.20 -2.71 17.20 2.25 0.04 -2.67 16 17 F -0.20 -2.87 17.20 2.25 0.04 -2.83 16 18 C -0.03 -0.62 4.11 -104.62 -0.43 -1.05 16 19 C -0.07 -1.59 8.25 -39.58 -0.33 -1.92 16 20 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 21 C -0.14 -2.50 10.05 -39.58 -0.40 -2.89 16 22 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 23 C -0.14 -2.79 9.50 -39.59 -0.38 -3.17 16 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.41 7.58 8.25 -40.82 -0.34 7.24 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.12 2.62 7.93 -52.49 -0.42 2.21 16 30 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.11 2.04 7.95 -52.49 -0.42 1.63 16 LS Contribution 296.30 15.07 4.47 4.47 Total: -1.00 -30.81 296.30 -5.90 -36.71 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -3.58 Total: 9.56 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.78 Total: -10.04 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.45 Total: -37.84 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.08 Total: -5.51 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.63 Total: 15.45 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.81 -5.90 -36.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265471783.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.940 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds