Wall clock time and date at job start Mon Mar 30 2020 01:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35757 * 119.62988 * 2 1 4 4 C 1.35352 * 120.70593 * 179.73256 * 3 2 1 5 5 C 1.40197 * 119.94368 * 0.52567 * 4 3 2 6 6 C 1.50695 * 120.36406 * 179.73240 * 5 4 3 7 7 S 1.81397 * 109.47452 * 284.72338 * 6 5 4 8 8 O 1.42100 * 109.46829 * 63.61710 * 7 6 5 9 9 C 1.81404 * 103.00143 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.46946 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99711 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00219 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46794 * 90.00022 * 15 13 11 17 17 H 1.48502 * 109.47140 * 210.00005 * 15 13 11 18 18 H 1.48501 * 109.46982 * 330.00118 * 15 13 11 19 19 C 1.36399 * 119.26565 * 359.46190 * 5 4 3 20 20 C 1.34660 * 119.62077 * 179.97438 * 2 1 3 21 21 O 1.22062 * 119.98772 * 359.97438 * 20 2 1 22 22 H 1.08995 * 109.47243 * 270.02030 * 1 2 3 23 23 H 1.09006 * 109.46848 * 30.01676 * 1 2 3 24 24 H 1.08997 * 109.47545 * 150.01938 * 1 2 3 25 25 H 1.08005 * 119.64619 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.02768 * 180.26268 * 4 3 2 27 27 H 1.09007 * 109.47042 * 164.72524 * 6 5 4 28 28 H 1.09007 * 109.47150 * 44.72963 * 6 5 4 29 29 H 1.09002 * 109.47124 * 60.00087 * 9 7 6 30 30 H 1.09001 * 109.46975 * 300.00209 * 9 7 6 31 31 H 1.09001 * 109.47194 * 299.99756 * 10 9 7 32 32 H 1.08992 * 109.47399 * 59.99928 * 10 9 7 33 33 H 0.97000 * 119.99684 * 179.97438 * 14 13 11 34 34 H 1.08003 * 120.34594 * 180.25435 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1362 1.1801 0.0000 4 6 3.4894 1.2055 0.0054 5 6 4.2119 0.0040 0.0000 6 6 5.7188 0.0213 -0.0001 7 16 6.3183 0.4703 -1.6522 8 8 5.8997 1.7917 -1.9651 9 6 8.1213 0.4373 -1.4550 10 6 8.7864 0.8011 -2.7840 11 6 10.2843 0.7731 -2.6202 12 1 10.7183 0.5215 -1.6639 13 6 11.1005 1.0688 -3.6914 14 7 12.4076 1.0449 -3.5484 15 14 10.3497 1.5034 -5.3458 16 1 10.1359 2.9709 -5.4222 17 1 11.2683 1.0797 -6.4330 18 1 9.0479 0.8049 -5.4974 19 6 3.5359 -1.1806 0.0004 20 6 2.1305 -1.1706 0.0005 21 8 1.5130 -2.2235 0.0015 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8899 -0.5141 24 1 -0.3634 -0.8901 -0.5135 25 1 1.5844 2.1085 0.0004 26 1 4.0122 2.1505 0.0097 27 1 6.0935 -0.9671 0.2662 28 1 6.0738 0.7523 0.7264 29 1 8.4355 -0.5616 -1.1525 30 1 8.4166 1.1577 -0.6921 31 1 8.4912 0.0810 -3.5472 32 1 8.4722 1.8001 -3.0861 33 1 12.9818 1.2525 -4.3022 34 1 4.0749 -2.1165 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324493095.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:32 Heat of formation + Delta-G solvation = -43.978846 kcal Electronic energy + Delta-G solvation = -17544.774829 eV Core-core repulsion = 14569.939287 eV Total energy + Delta-G solvation = -2974.835542 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43234 -37.18216 -35.59875 -35.33561 -33.74046 -31.28916 -30.53973 -29.50907 -26.63020 -25.58298 -23.86873 -21.93797 -20.73591 -17.77031 -17.55199 -17.31864 -16.80819 -16.27923 -16.19741 -15.03709 -14.68347 -14.64966 -14.24786 -14.10104 -13.70170 -13.45826 -13.31053 -12.91616 -12.69021 -12.41659 -12.13793 -11.86340 -11.71610 -11.55356 -11.09035 -10.79362 -10.43167 -10.18688 -10.09497 -9.98339 -9.44481 -9.15345 -8.61513 -8.15025 -7.86821 -6.11745 -4.11593 0.56337 1.54976 1.97194 2.45748 2.93073 3.28514 3.35809 3.38255 3.50707 3.99680 4.29195 4.39322 4.39554 4.51828 4.82169 4.90144 5.06033 5.10326 5.21436 5.28829 5.34752 5.56732 5.76528 5.79918 5.90111 5.90789 6.23559 6.32580 6.54290 6.86946 7.01598 7.13547 7.64993 7.87153 8.43942 8.91124 9.49095 11.01213 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.043718 B = 0.003618 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.316379 B = 7738.065565 C = 7867.974507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.504 5.504 3 C 0.129 3.871 4 C -0.219 4.219 5 C 0.045 3.955 6 C -0.429 4.429 7 S 1.226 4.774 8 O -0.842 6.842 9 C -0.409 4.409 10 C 0.003 3.997 11 C -0.520 4.520 12 H 0.074 0.926 13 C 0.068 3.932 14 N -0.900 5.900 15 Si 0.876 3.124 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.262 1.262 19 C -0.244 4.244 20 C 0.515 3.485 21 O -0.558 6.558 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.163 0.837 26 H 0.147 0.853 27 H 0.130 0.870 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.018 0.982 33 H 0.265 0.735 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.003 -2.217 6.996 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.215 5.215 3 C 0.002 3.998 4 C -0.243 4.243 5 C 0.040 3.960 6 C -0.561 4.561 7 S 1.426 4.574 8 O -0.837 6.837 9 C -0.549 4.549 10 C -0.035 4.035 11 C -0.559 4.559 12 H 0.092 0.908 13 C -0.134 4.134 14 N -0.539 5.539 15 Si 0.703 3.297 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.186 1.186 19 C -0.268 4.268 20 C 0.318 3.682 21 O -0.442 6.442 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.112 0.888 25 H 0.180 0.820 26 H 0.165 0.835 27 H 0.148 0.852 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -22.837 -2.633 6.123 23.790 hybrid contribution 0.709 1.929 0.801 2.206 sum -22.128 -0.704 6.924 23.197 Atomic orbital electron populations 1.22128 0.77429 1.04921 1.03691 1.45403 1.09155 1.06925 1.60066 1.21849 0.93530 0.89348 0.95041 1.20728 0.92630 0.99556 1.11363 1.19481 0.93918 0.92988 0.89590 1.26985 0.97070 1.10032 1.22033 1.70853 0.89471 1.05999 0.91067 1.93083 1.77297 1.40302 1.73014 1.27453 1.13872 1.07257 1.06273 1.19251 0.97367 0.96584 0.90345 1.21019 0.88279 1.47774 0.98802 0.90824 1.25019 0.94724 0.94652 0.98960 1.69899 1.03017 1.49159 1.31800 0.86833 0.79684 0.79406 0.83816 1.20161 1.21049 1.18649 1.22020 0.92381 0.99411 1.12963 1.17088 0.89196 0.82633 0.79330 1.90944 1.69918 1.29534 1.53792 0.90802 0.89781 0.88776 0.81986 0.83507 0.85167 0.87797 0.86865 0.90186 0.95371 0.96372 0.92544 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.36 59.85 0.62 1.01 16 2 N -0.50 -4.98 2.99 -127.20 -0.38 -5.36 16 3 C 0.13 1.10 10.28 -16.84 -0.17 0.92 16 4 C -0.22 -2.36 9.46 -39.88 -0.38 -2.74 16 5 C 0.05 0.51 5.16 -104.55 -0.54 -0.03 16 6 C -0.43 -4.63 6.11 36.00 0.22 -4.41 16 7 S 1.23 17.03 13.12 -107.50 -1.41 15.62 16 8 O -0.84 -16.17 17.88 -35.23 -0.63 -16.80 16 9 C -0.41 -7.19 5.86 37.16 0.22 -6.97 16 10 C 0.00 0.08 4.05 -27.88 -0.11 -0.04 16 11 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 15 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 19 C -0.24 -2.85 9.62 -39.38 -0.38 -3.23 16 20 C 0.51 6.70 7.41 -15.45 -0.11 6.58 16 21 O -0.56 -8.96 16.64 4.86 0.08 -8.88 16 22 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.08 0.30 8.01 -51.93 -0.42 -0.11 16 24 H 0.09 0.73 7.39 -51.93 -0.38 0.35 16 25 H 0.16 0.76 8.04 -52.48 -0.42 0.33 16 26 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.13 1.05 7.96 -51.92 -0.41 0.64 16 28 H 0.10 1.15 8.14 -51.92 -0.42 0.72 16 29 H 0.11 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 31 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 32 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.15 1.56 8.01 -52.48 -0.42 1.14 16 LS Contribution 307.34 15.07 4.63 4.63 Total: -1.00 -37.93 307.34 -7.19 -45.13 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.52 Total: -2.58 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.07 Total: -21.87 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.39 Total: -32.00 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.55 Total: -25.68 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 17.03 SS G_CDS: -1.41 Total: 15.62 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -37.93 -7.19 -45.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324493095.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.147 kcal (2) G-P(sol) polarization free energy of solvation -37.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds