Wall clock time and date at job start Mon Mar 30 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46990 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47074 * 179.97438 * 17 16 15 19 19 C 1.33636 * 122.74889 * 124.72803 * 18 17 16 20 20 S 1.76195 * 107.92487 * 179.97438 * 19 18 17 21 21 C 1.70980 * 90.27995 * 0.27342 * 20 19 18 22 22 N 1.29019 * 110.16918 * 359.84246 * 21 20 19 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 28 28 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 29 29 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 30 30 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 31 31 H 1.09001 * 109.46759 * 299.99385 * 17 16 15 32 32 H 1.08990 * 109.47219 * 59.99425 * 17 16 15 33 33 H 1.08004 * 126.03829 * 0.03734 * 19 18 17 34 34 H 1.08005 * 124.91586 * 179.83915 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 6 1.7558 -0.3187 -4.8834 17 6 2.3018 -1.0930 -6.0848 18 6 1.8375 -0.4359 -7.3591 19 6 2.6815 -0.0304 -8.3126 20 16 1.7287 0.6753 -9.6159 21 6 0.2907 0.3623 -8.7455 22 7 0.5663 -0.2083 -7.6216 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 3.3163 -0.9858 -3.5570 28 1 1.8625 -2.0129 -3.5567 29 1 0.6663 -0.3185 -4.9165 30 1 2.1203 0.7080 -4.9163 31 1 3.3913 -1.0934 -6.0520 32 1 1.9369 -2.1194 -6.0518 33 1 3.7575 -0.1204 -8.2889 34 1 -0.7043 0.6069 -9.0870 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344834098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:33 Heat of formation + Delta-G solvation = -78.215139 kcal Electronic energy + Delta-G solvation = -17413.789477 eV Core-core repulsion = 14437.469338 eV Total energy + Delta-G solvation = -2976.320139 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34507 -40.80392 -37.71276 -35.92322 -35.18150 -32.68191 -31.35701 -27.91212 -27.27841 -25.78895 -24.76390 -22.75520 -21.62862 -20.47633 -18.90063 -18.57251 -17.95732 -17.59771 -17.37752 -16.69990 -16.12646 -15.91842 -15.29961 -14.88001 -14.60408 -14.24594 -14.07613 -13.72728 -13.49611 -13.40849 -12.98575 -12.77229 -12.63486 -12.53579 -12.31648 -12.20924 -12.04593 -11.97295 -11.41554 -11.12582 -11.02674 -10.57683 -10.53397 -10.39267 -9.73104 -8.20160 -6.33842 -0.18485 0.52861 0.81288 1.42207 1.43217 1.45823 1.52654 1.75472 2.00107 2.44448 3.09738 3.32374 3.79998 3.89705 4.07192 4.25190 4.32092 4.34069 4.47064 4.54941 4.67852 4.68586 4.70699 4.89715 4.98695 5.11138 5.12374 5.25153 5.39846 5.52449 5.69224 5.87791 6.09785 6.72463 6.81520 7.05315 7.34960 8.86321 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.057714 B = 0.002825 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.031350 B = 9910.726381 C =10191.900894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.050 0.950 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.965 3.035 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.472 3.528 13 O -0.543 6.543 14 O -0.366 6.366 15 C 0.058 3.942 16 C -0.096 4.096 17 C -0.037 4.037 18 C 0.046 3.954 19 C -0.258 4.258 20 S 0.154 5.846 21 C 0.015 3.985 22 N -0.504 5.504 23 H 0.047 0.953 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.269 0.731 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.199 0.801 34 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 0.778 -24.849 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.318 3.682 13 O -0.433 6.433 14 O -0.283 6.283 15 C -0.016 4.016 16 C -0.134 4.134 17 C -0.077 4.077 18 C -0.085 4.085 19 C -0.397 4.397 20 S 0.407 5.593 21 C -0.283 4.283 22 N -0.219 5.219 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.216 0.784 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.904 0.929 -25.362 25.395 hybrid contribution 0.508 -0.864 1.620 1.905 sum 1.412 0.065 -23.742 23.784 Atomic orbital electron populations 1.21566 0.94465 0.99883 1.01965 1.18678 0.95868 0.96164 0.86294 0.93178 1.21237 1.32751 1.13349 0.90516 0.92500 1.25670 0.94861 0.95656 1.01635 1.69959 1.36616 1.23403 1.24848 0.85500 0.78741 0.78646 0.78114 1.19826 1.19856 1.19842 1.24822 0.75994 0.82535 0.84860 1.90463 1.37551 1.27793 1.87491 1.86553 1.70227 1.56128 1.15415 1.23197 0.99191 0.95662 0.83542 1.21323 1.02019 0.99859 0.90182 1.20063 1.01841 0.98596 0.87200 1.20356 0.87341 1.02213 0.98596 1.27218 1.06219 1.08450 0.97841 1.83873 0.99108 1.55238 1.21115 1.28916 1.05499 1.00790 0.93087 1.66118 1.20573 1.16026 1.19173 0.93419 0.95249 0.90297 0.92210 0.91093 0.91713 0.91267 0.91066 0.87768 0.89669 0.78407 0.75997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.90 71.98 0.64 -5.27 16 2 C 0.05 2.59 2.74 -12.29 -0.03 2.56 16 3 H 0.05 2.75 8.14 -2.39 -0.02 2.74 16 4 C -0.54 -31.37 8.37 25.60 0.21 -31.16 16 5 H 0.06 3.44 6.76 -2.91 -0.02 3.42 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -51.32 11.32 21.45 0.24 -51.08 16 8 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.47 23.11 7.25 71.24 0.52 23.62 16 13 O -0.54 -28.67 15.21 21.98 0.33 -28.34 16 14 O -0.37 -15.07 10.12 -51.39 -0.52 -15.59 16 15 C 0.06 1.83 5.47 71.98 0.39 2.23 16 16 C -0.10 -2.43 5.50 30.60 0.17 -2.26 16 17 C -0.04 -0.72 5.71 29.85 0.17 -0.55 16 18 C 0.05 0.92 6.08 41.52 0.25 1.18 16 19 C -0.26 -3.85 11.07 66.78 0.74 -3.11 16 20 S 0.15 1.83 23.22 -56.49 -1.31 0.52 16 21 C 0.01 0.22 12.23 130.66 1.60 1.82 16 22 N -0.50 -11.13 10.34 -191.55 -1.98 -13.11 16 23 H 0.05 2.04 8.11 -2.38 -0.02 2.02 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 4.13 6.07 -2.39 -0.01 4.11 16 26 H 0.27 14.26 8.31 -92.71 -0.77 13.48 16 27 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 28 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 29 H 0.07 1.95 8.07 -2.38 -0.02 1.93 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.56 8.03 -2.39 -0.02 1.54 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.22 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -68.12 309.99 4.99 -63.13 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.09 Total: 7.39 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.11 Total: -9.29 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -1.74 Total: -64.19 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.19 Total: -43.93 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.31 Total: 0.52 kcal Total: -68.12 4.99 -63.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344834098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.086 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds