Wall clock time and date at job start Mon Mar 30 2020 01:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31277 * 1 3 3 Si 1.86801 * 119.99981 * 2 1 4 4 H 1.48501 * 109.46945 * 239.99958 * 3 2 1 5 5 H 1.48495 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47144 * 119.99985 * 3 2 1 7 7 C 1.39177 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99702 * 179.97438 * 7 2 1 9 9 N 1.36679 * 120.00477 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00685 * 179.97438 * 9 7 2 11 11 O 1.21547 * 119.99691 * 359.97438 * 10 9 7 12 12 C 1.48251 * 120.00393 * 179.97438 * 10 9 7 13 13 C 1.39737 * 120.51205 * 179.97438 * 12 10 9 14 14 C 1.38769 * 118.42042 * 179.72823 * 13 12 10 15 15 N 1.32099 * 119.25898 * 0.25127 * 14 13 12 16 16 C 1.32678 * 120.98406 * 0.02562 * 15 14 13 17 17 C 1.48327 * 119.14314 * 180.02562 * 16 15 14 18 18 C 1.39370 * 120.12556 * 179.72439 * 17 16 15 19 19 C 1.38017 * 119.87076 * 179.70210 * 18 17 16 20 20 C 1.38318 * 120.12380 * 0.59875 * 19 18 17 21 21 C 1.38326 * 120.25619 * 359.67602 * 20 19 18 22 22 C 1.38012 * 120.11943 * 0.02562 * 21 20 19 23 23 N 1.32385 * 121.72157 * 359.97438 * 16 15 14 24 24 H 0.97001 * 119.99745 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99867 * 359.97438 * 9 7 2 26 26 H 1.08002 * 120.79195 * 0.02562 * 13 12 10 27 27 H 1.08004 * 120.36680 * 180.23057 * 14 13 12 28 28 H 1.07997 * 120.05949 * 359.97408 * 18 17 16 29 29 H 1.08002 * 119.93492 * 180.29491 * 19 18 17 30 30 H 1.08005 * 119.87688 * 179.70172 * 20 19 18 31 31 H 1.07992 * 119.94286 * 180.02562 * 21 20 19 32 32 H 1.07997 * 120.06458 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 3.1005 1.6964 -1.2125 5 1 1.2818 2.7464 -0.0006 6 1 3.1006 1.6964 1.2125 7 6 2.0086 -1.2053 0.0005 8 1 3.0887 -1.2053 0.0001 9 7 1.3253 -2.3890 0.0005 10 6 1.9991 -3.5563 0.0005 11 8 3.2146 -3.5563 0.0001 12 6 1.2578 -4.8402 0.0011 13 6 1.9457 -6.0565 0.0006 14 6 1.2085 -7.2322 0.0069 15 7 -0.1109 -7.1669 0.0082 16 6 -0.7369 -5.9971 0.0030 17 6 -2.2199 -5.9714 0.0052 18 6 -2.8985 -4.7541 0.0056 19 6 -4.2785 -4.7363 0.0015 20 6 -4.9881 -5.9236 0.0095 21 6 -4.3199 -7.1348 0.0148 22 6 -2.9401 -7.1646 0.0128 23 7 -0.0725 -4.8521 -0.0032 24 1 -0.4850 0.8401 0.0004 25 1 0.3552 -2.3891 0.0005 26 1 3.0254 -6.0811 0.0002 27 1 1.7079 -8.1898 0.0105 28 1 -2.3454 -3.8265 0.0047 29 1 -4.8054 -3.7935 -0.0030 30 1 -6.0679 -5.9051 0.0111 31 1 -4.8789 -8.0588 0.0206 32 1 -2.4194 -8.1108 0.0166 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627705750.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:42 Heat of formation + Delta-G solvation = 36.267207 kcal Electronic energy + Delta-G solvation = -18906.660539 eV Core-core repulsion = 15832.153527 eV Total energy + Delta-G solvation = -3074.507012 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72398 -38.78382 -37.89205 -34.28363 -33.43934 -32.72833 -31.43083 -30.79075 -29.69875 -26.10103 -24.43556 -24.15963 -22.19914 -21.60803 -19.88143 -18.31324 -17.41551 -17.20420 -16.21655 -15.38716 -15.09353 -14.80708 -14.66969 -14.45675 -14.05575 -13.95398 -13.36418 -13.32521 -13.21540 -12.75130 -12.53560 -11.79098 -11.29240 -11.25512 -10.96494 -10.65056 -10.56584 -10.44621 -10.39855 -9.85860 -9.64226 -9.23607 -8.83736 -8.54174 -8.33145 -8.24229 -6.74407 -4.01647 0.62762 1.16485 1.52249 1.82145 3.07485 3.12702 3.16513 3.55467 3.91001 3.97878 3.98459 4.30569 4.47554 4.60333 5.01684 5.09066 5.14165 5.17885 5.31247 5.34120 5.56465 5.61058 5.70106 5.80276 6.02203 6.14473 6.29903 6.46290 6.58504 6.71110 6.73787 7.02774 7.24038 7.29060 7.77461 8.29135 8.40456 8.87543 9.27117 9.84565 10.40173 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.005394 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.662509 B = 5189.539137 C = 6701.350672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.292 4.292 8 H 0.113 0.887 9 N -0.506 5.506 10 C 0.452 3.548 11 O -0.596 6.596 12 C 0.169 3.831 13 C -0.195 4.195 14 C 0.143 3.857 15 N -0.525 5.525 16 C 0.350 3.650 17 C -0.040 4.040 18 C -0.069 4.069 19 C -0.130 4.130 20 C -0.107 4.107 21 C -0.136 4.136 22 C -0.076 4.076 23 N -0.499 5.499 24 H 0.281 0.719 25 H 0.406 0.594 26 H 0.154 0.846 27 H 0.169 0.831 28 H 0.142 0.858 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 -10.497 0.031 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.179 4.179 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.423 4.423 8 H 0.130 0.870 9 N -0.138 5.138 10 C 0.239 3.761 11 O -0.483 6.483 12 C 0.022 3.978 13 C -0.219 4.219 14 C -0.022 4.022 15 N -0.240 5.240 16 C 0.084 3.916 17 C -0.042 4.042 18 C -0.088 4.088 19 C -0.148 4.148 20 C -0.125 4.125 21 C -0.154 4.154 22 C -0.095 4.095 23 N -0.216 5.216 24 H 0.092 0.908 25 H 0.241 0.759 26 H 0.172 0.828 27 H 0.186 0.814 28 H 0.160 0.840 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.476 -10.264 0.028 13.311 hybrid contribution 0.770 0.712 -0.003 1.049 sum -7.706 -9.552 0.025 12.273 Atomic orbital electron populations 1.69583 1.06382 1.29494 1.44947 1.25561 0.95733 1.00539 0.96027 0.85758 0.78892 0.79210 0.79581 1.19334 1.20511 1.19326 1.19967 0.94057 0.82047 1.46265 0.86974 1.41897 1.10507 1.04438 1.56917 1.17151 0.86881 0.82248 0.89829 1.90616 1.12296 1.85855 1.59533 1.22156 0.88707 0.96031 0.90950 1.22862 1.03558 0.93014 1.02435 1.23079 0.89089 0.98534 0.91531 1.68161 1.11013 1.29047 1.15789 1.21167 0.94157 0.83914 0.92319 1.18109 0.87657 0.94198 1.04196 1.21494 0.94230 0.98197 0.94922 1.21148 0.93921 0.98421 1.01300 1.21283 0.99848 0.92672 0.98745 1.21054 0.94062 0.98000 1.02318 1.21273 0.93704 0.97920 0.96621 1.68415 1.08808 1.30319 1.14095 0.90846 0.75884 0.82790 0.81401 0.83995 0.85513 0.86106 0.85880 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.43 13.04 55.51 0.72 -21.70 16 2 C 0.03 0.72 5.50 -17.44 -0.10 0.62 16 3 Si 0.94 19.72 29.55 -169.99 -5.02 14.70 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.29 -7.92 9.68 -15.04 -0.15 -8.06 16 8 H 0.11 3.12 7.15 -52.48 -0.38 2.74 16 9 N -0.51 -13.25 5.26 -11.73 -0.06 -13.31 16 10 C 0.45 11.43 7.77 -12.15 -0.09 11.34 16 11 O -0.60 -16.41 15.99 5.32 0.09 -16.32 16 12 C 0.17 3.63 6.79 -82.67 -0.56 3.07 16 13 C -0.19 -3.47 9.72 -38.83 -0.38 -3.84 16 14 C 0.14 2.15 11.30 -17.24 -0.19 1.95 16 15 N -0.52 -8.78 9.43 -11.16 -0.11 -8.88 16 16 C 0.35 6.43 7.55 -157.05 -1.19 5.24 16 17 C -0.04 -0.64 5.88 -104.90 -0.62 -1.26 16 18 C -0.07 -1.07 9.56 -39.24 -0.38 -1.45 16 19 C -0.13 -1.65 10.03 -39.63 -0.40 -2.05 16 20 C -0.11 -1.18 10.04 -39.52 -0.40 -1.58 16 21 C -0.14 -1.54 10.03 -39.63 -0.40 -1.93 16 22 C -0.08 -1.02 9.56 -39.24 -0.38 -1.40 16 23 N -0.50 -10.27 8.71 -7.74 -0.07 -10.34 16 24 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 25 H 0.41 10.44 7.27 -40.82 -0.30 10.14 16 26 H 0.15 2.57 7.73 -52.49 -0.41 2.16 16 27 H 0.17 1.75 8.06 -52.48 -0.42 1.32 16 28 H 0.14 2.42 7.51 -52.49 -0.39 2.03 16 29 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.71 7.51 -52.49 -0.39 1.31 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -30.24 294.44 -7.92 -38.16 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -2.69 Total: 12.62 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -5.21 Total: 0.65 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.49 Total: -54.23 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.24 -7.92 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627705750.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.429 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds