Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31242 * 124.05401 * 2 1 4 4 N 1.27332 * 120.03639 * 179.97438 * 3 2 1 5 5 S 1.56641 * 109.74327 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05688 * 179.97438 * 2 1 3 7 7 C 1.47175 * 128.47137 * 359.97438 * 6 2 1 8 8 O 1.21619 * 120.00106 * 352.69307 * 7 6 2 9 9 N 1.34782 * 119.99501 * 172.69554 * 7 6 2 10 10 C 1.46495 * 120.00095 * 3.18049 * 9 7 6 11 11 C 1.50701 * 109.47080 * 82.77923 * 10 9 7 12 12 H 1.08006 * 120.00059 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00328 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99930 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00142 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46959 * 90.00053 * 15 13 11 17 17 H 1.48502 * 109.47269 * 210.00035 * 15 13 11 18 18 H 1.48497 * 109.47059 * 330.00292 * 15 13 11 19 19 C 1.46505 * 119.99679 * 183.18663 * 9 7 6 20 20 C 1.53001 * 109.47141 * 124.73182 * 19 9 7 21 21 C 1.53004 * 109.46859 * 244.73199 * 19 9 7 22 22 H 1.08998 * 109.47333 * 270.00722 * 1 2 3 23 23 H 1.08997 * 109.46767 * 30.00991 * 1 2 3 24 24 H 1.08999 * 109.46943 * 150.00214 * 1 2 3 25 25 H 1.08998 * 109.46874 * 202.77465 * 10 9 7 26 26 H 1.08998 * 109.47411 * 322.77831 * 10 9 7 27 27 H 0.96996 * 119.99954 * 179.97438 * 14 13 11 28 28 H 1.09005 * 109.47048 * 4.73096 * 19 9 7 29 29 H 1.08996 * 109.47111 * 59.99832 * 20 19 9 30 30 H 1.08999 * 109.46761 * 180.02562 * 20 19 9 31 31 H 1.08999 * 109.46878 * 299.99451 * 20 19 9 32 32 H 1.08997 * 109.46869 * 59.99880 * 21 19 9 33 33 H 1.09000 * 109.47216 * 180.02562 * 21 19 9 34 34 H 1.09000 * 109.46822 * 300.00407 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5121 0.9981 0.0005 5 16 3.9367 -0.5096 0.0017 6 6 2.2812 -1.1453 0.0005 7 6 1.8394 -2.5492 0.0017 8 8 0.6604 -2.8155 0.1362 9 7 2.7414 -3.5396 -0.1464 10 6 4.1687 -3.2227 -0.2385 11 6 4.7345 -3.0459 1.1470 12 1 4.0947 -3.1580 2.0100 13 6 6.0688 -2.7412 1.3132 14 7 6.8478 -2.6042 0.2625 15 14 6.7698 -2.5213 3.0307 16 1 7.2613 -3.8285 3.5357 17 1 7.8950 -1.5532 2.9859 18 1 5.7105 -2.0076 3.9357 19 6 2.2945 -4.9331 -0.2154 20 6 2.8230 -5.5753 -1.4995 21 6 2.8285 -5.7005 0.9959 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8899 -0.5140 24 1 -0.3633 -0.8900 -0.5138 25 1 4.6898 -4.0367 -0.7425 26 1 4.3005 -2.3010 -0.8051 27 1 7.7864 -2.3894 0.3794 28 1 1.2049 -4.9657 -0.2146 29 1 3.9125 -5.5427 -1.5003 30 1 2.4901 -6.6119 -1.5510 31 1 2.4425 -5.0287 -2.3624 32 1 2.4519 -5.2429 1.9107 33 1 2.4963 -6.7374 0.9444 34 1 3.9180 -5.6678 0.9951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087428310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = 29.169857 kcal Electronic energy + Delta-G solvation = -19248.123815 eV Core-core repulsion = 16308.752990 eV Total energy + Delta-G solvation = -2939.370825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.08121 -39.17807 -35.96382 -33.50705 -32.49286 -31.58426 -27.79441 -27.46210 -26.78658 -26.12788 -23.37944 -22.50511 -20.07769 -18.29175 -17.95070 -16.93483 -16.34051 -15.72804 -15.23691 -14.69867 -14.20205 -13.93335 -13.56516 -13.17466 -12.71707 -12.57174 -12.53765 -12.36851 -12.04437 -11.92094 -11.71650 -11.61526 -11.19322 -11.02136 -10.90245 -10.67189 -10.55811 -10.16128 -9.93984 -9.40567 -9.12568 -9.01499 -8.84798 -8.60868 -7.95072 -6.48113 -4.52776 0.58860 1.80246 2.49658 2.67906 3.08307 3.17510 3.20145 3.61991 3.68615 4.11540 4.67261 4.86047 5.14358 5.31932 5.45836 5.54159 5.69493 5.92042 5.96084 5.99339 6.02794 6.11942 6.24184 6.27904 6.42226 6.54198 6.58187 6.82225 6.85029 7.27266 7.48458 7.66899 8.01616 8.47664 8.53345 8.73998 9.09866 10.56171 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.011026 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.105104 B = 2538.925192 C = 3883.601148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.074 3.926 3 N -0.284 5.284 4 N -0.357 5.357 5 S 0.585 5.415 6 C -0.328 4.328 7 C 0.604 3.396 8 O -0.556 6.556 9 N -0.586 5.586 10 C 0.228 3.772 11 C -0.535 4.535 12 H 0.070 0.930 13 C 0.075 3.925 14 N -0.871 5.871 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.270 1.270 19 C 0.140 3.860 20 C -0.161 4.161 21 C -0.155 4.155 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.273 0.727 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -2.995 -1.974 6.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 N -0.146 5.146 4 N -0.335 5.335 5 S 0.728 5.272 6 C -0.467 4.467 7 C 0.391 3.609 8 O -0.438 6.438 9 N -0.317 5.317 10 C 0.105 3.895 11 C -0.578 4.578 12 H 0.088 0.912 13 C -0.132 4.132 14 N -0.507 5.507 15 Si 0.715 3.285 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.194 1.194 19 C 0.036 3.964 20 C -0.219 4.219 21 C -0.213 4.213 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.652 -1.826 -2.005 4.549 hybrid contribution -0.556 -0.515 1.013 1.265 sum -4.208 -2.341 -0.992 4.917 Atomic orbital electron populations 1.20269 0.85269 1.03528 1.03298 1.22730 0.99520 0.86221 0.99259 1.70737 0.97818 1.28294 1.17755 1.78099 1.09132 1.24912 1.21392 1.84746 1.05822 0.92803 1.43831 1.27642 0.99751 0.99596 1.19743 1.16500 0.85170 0.82569 0.76641 1.90673 1.16861 1.83512 1.52715 1.48104 1.08833 1.05291 1.69469 1.19694 0.75146 0.96747 0.97897 1.21571 0.94791 1.49079 0.92330 0.91207 1.24934 0.96558 0.94225 0.97492 1.69887 1.06634 1.44943 1.29235 0.86592 0.79250 0.78674 0.83962 1.19937 1.20480 1.19411 1.20917 0.99908 0.80366 0.95164 1.22153 1.02546 1.00075 0.97095 1.22094 1.03308 0.98314 0.97597 0.90431 0.91033 0.89115 0.92171 0.95298 0.91755 0.89143 0.91411 0.91938 0.92796 0.92691 0.92873 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 9.83 36.01 0.35 -0.66 16 2 C 0.07 1.45 7.00 -82.84 -0.58 0.87 16 3 N -0.28 -5.97 11.54 33.42 0.39 -5.58 16 4 N -0.36 -7.67 12.51 60.35 0.75 -6.92 16 5 S 0.59 12.25 17.42 -107.50 -1.87 10.38 16 6 C -0.33 -6.79 6.47 -35.95 -0.23 -7.02 16 7 C 0.60 12.58 7.59 -12.63 -0.10 12.48 16 8 O -0.56 -11.96 14.34 5.26 0.08 -11.89 16 9 N -0.59 -11.50 2.38 -168.82 -0.40 -11.90 16 10 C 0.23 4.79 4.08 -5.20 -0.02 4.77 16 11 C -0.54 -12.13 6.41 -34.44 -0.22 -12.35 16 12 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 13 C 0.07 1.73 5.25 -17.82 -0.09 1.64 16 14 N -0.87 -20.75 13.29 55.43 0.74 -20.01 16 15 Si 0.89 18.79 29.54 -169.99 -5.02 13.77 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 19 C 0.14 2.34 3.24 -67.93 -0.22 2.12 16 20 C -0.16 -2.29 9.10 37.16 0.34 -1.95 16 21 C -0.16 -2.46 8.94 37.16 0.33 -2.13 16 22 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.09 1.47 6.65 -51.93 -0.35 1.12 16 25 H 0.06 1.29 6.20 -51.93 -0.32 0.96 16 26 H 0.03 0.65 4.48 -24.52 -0.11 0.54 16 27 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 28 H 0.09 1.54 6.93 -51.93 -0.36 1.18 16 29 H 0.07 1.02 6.50 -51.93 -0.34 0.68 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.31 7.32 -51.93 -0.38 0.93 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -25.63 293.28 -5.30 -30.93 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.94 Total: -0.97 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.44 Total: -2.23 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 1.48 Total: -44.41 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: 12.25 SS G_CDS: -1.87 Total: 10.38 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -25.63 -5.30 -30.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087428310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.096 kcal (2) G-P(sol) polarization free energy of solvation -25.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds